Wall clock time and date at job start Fri Apr 10 2020 17:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 C 1.50700 * 109.47114 * 239.99481 * 2 1 3 5 5 O 1.21281 * 120.00163 * 239.99966 * 4 2 1 6 6 N 1.34776 * 119.99760 * 60.00845 * 4 2 1 7 7 C 1.46500 * 119.99971 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.47324 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.46470 * 304.99600 * 8 7 6 10 10 O 1.42895 * 109.47175 * 64.99616 * 8 7 6 11 11 C 1.53004 * 109.47109 * 185.00019 * 8 7 6 12 12 N 1.46496 * 109.46826 * 179.97438 * 11 8 7 13 13 C 1.36939 * 119.99795 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99971 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00093 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47174 * 0.02562 * 17 15 13 19 19 H 1.48490 * 109.47161 * 120.00484 * 17 15 13 20 20 H 1.48506 * 109.47312 * 240.00543 * 17 15 13 21 21 C 1.50705 * 109.46674 * 119.99953 * 2 1 3 22 22 C 1.38675 * 120.41661 * 239.99792 * 21 2 1 23 23 C 1.38628 * 118.42013 * 179.97438 * 22 21 2 24 24 C 1.38220 * 119.16326 * 359.97438 * 23 22 21 25 25 N 1.31857 * 120.76198 * 0.02562 * 24 23 22 26 26 C 1.31883 * 121.72627 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47312 * 300.00218 * 1 2 3 29 29 H 1.09004 * 109.46572 * 60.00086 * 1 2 3 30 30 H 0.96999 * 119.99750 * 359.97438 * 6 4 2 31 31 H 1.09001 * 109.46886 * 300.00045 * 7 6 4 32 32 H 1.09003 * 109.47150 * 59.99191 * 7 6 4 33 33 H 0.96699 * 113.99752 * 60.00403 * 10 8 7 34 34 H 1.08994 * 109.46819 * 299.99766 * 11 8 7 35 35 H 1.08997 * 109.46828 * 59.99808 * 11 8 7 36 36 H 0.97006 * 120.00240 * 359.97438 * 12 11 8 37 37 H 0.97002 * 120.00185 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.78542 * 359.70640 * 22 21 2 39 39 H 1.07996 * 120.41751 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.62169 * 180.02562 * 24 23 22 41 41 H 1.08007 * 119.61759 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6507 8 6 1.6852 -0.2196 -4.8999 9 1 0.5988 -0.1422 -4.8562 10 8 2.2540 1.0899 -4.9602 11 6 2.0905 -1.0096 -6.1460 12 7 1.6012 -0.3197 -7.3421 13 6 1.8462 -0.8439 -8.5832 14 1 2.3998 -1.7662 -8.6802 15 6 1.3821 -0.1905 -9.7166 16 7 0.7070 0.9331 -9.5984 17 14 1.7169 -0.9053 -11.4097 18 1 2.4905 -2.1652 -11.2710 19 1 0.4283 -1.1885 -12.0910 20 1 2.4978 0.0696 -12.2130 21 6 2.0323 -0.7104 1.2305 22 6 2.8300 -0.0449 2.1490 23 6 3.2685 -0.7381 3.2666 24 6 2.8982 -2.0600 3.4274 25 7 2.1382 -2.6610 2.5332 26 6 1.7028 -2.0329 1.4584 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 1.1490 0.5385 -2.5435 31 1 3.2857 -0.9401 -3.6504 32 1 1.8327 -1.9682 -3.6508 33 1 3.2201 1.0975 -5.0012 34 1 3.1768 -1.0871 -6.1896 35 1 1.6565 -2.0084 -6.0999 36 1 1.1036 0.5085 -7.2550 37 1 0.3830 1.3899 -10.3904 38 1 3.1067 0.9877 1.9951 39 1 3.8916 -0.2514 4.0023 40 1 3.2353 -2.6069 4.2955 41 1 1.0816 -2.5582 0.7481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753933950.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:12 Heat of formation + Delta-G solvation = -76.148002 kcal Electronic energy + Delta-G solvation = -22582.417629 eV Core-core repulsion = 19075.107821 eV Total energy + Delta-G solvation = -3507.309808 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64098 -40.42526 -38.93870 -36.08268 -35.64055 -35.27191 -33.20794 -33.03744 -31.11114 -30.11957 -27.21346 -25.84206 -24.60259 -24.44702 -23.10709 -22.75980 -20.98066 -19.25707 -18.50399 -18.08353 -17.72562 -17.17300 -17.02400 -16.72383 -16.41730 -15.88362 -15.59478 -15.46708 -14.96389 -14.84867 -14.70683 -14.42292 -14.23305 -13.94934 -13.87486 -13.58319 -13.31501 -13.15976 -12.95849 -12.79223 -12.45552 -12.29906 -12.12760 -11.95855 -11.81376 -11.14947 -11.00029 -10.86177 -10.60676 -10.37630 -10.13340 -9.89557 -9.01843 -7.95913 -5.25273 0.17247 0.38293 1.47566 1.48008 1.58192 1.59946 2.11104 2.55424 2.91236 3.35511 3.41409 3.46782 3.60611 3.65946 3.75943 4.00505 4.03482 4.06699 4.14260 4.21092 4.22900 4.39999 4.42399 4.61474 4.64762 4.72349 4.80825 4.89236 4.91841 4.92874 5.20011 5.20475 5.21846 5.34720 5.37494 5.47839 5.80302 6.25640 6.51998 6.79188 7.05840 7.21532 7.32921 8.08068 8.31524 9.27372 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044582 B = 0.002356 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.911293 B =11882.148946 C =12100.019579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 H 0.137 0.863 4 C 0.514 3.486 5 O -0.580 6.580 6 N -0.708 5.708 7 C 0.103 3.897 8 C 0.110 3.890 9 H 0.104 0.896 10 O -0.561 6.561 11 C 0.121 3.879 12 N -0.739 5.739 13 C -0.247 4.247 14 H 0.075 0.925 15 C -0.075 4.075 16 N -0.967 5.967 17 Si 0.974 3.026 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.127 4.127 22 C -0.073 4.073 23 C -0.170 4.170 24 C 0.078 3.922 25 N -0.522 5.522 26 C 0.109 3.891 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.416 0.584 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.385 0.615 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.164 0.836 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 1.505 27.483 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.459 6.459 6 N -0.360 5.360 7 C -0.023 4.023 8 C 0.050 3.950 9 H 0.121 0.879 10 O -0.368 6.368 11 C -0.007 4.007 12 N -0.382 5.382 13 C -0.379 4.379 14 H 0.093 0.907 15 C -0.268 4.268 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.129 4.129 22 C -0.099 4.099 23 C -0.190 4.190 24 C -0.078 4.078 25 N -0.231 5.231 26 C -0.048 4.048 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.233 0.767 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.210 0.790 37 H 0.060 0.940 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.192 0.808 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.089 -0.043 27.588 27.667 hybrid contribution 0.507 0.686 -1.490 1.717 sum 2.596 0.643 26.098 26.235 Atomic orbital electron populations 1.21842 0.90239 1.03062 1.04681 1.20260 0.98944 1.00871 0.87865 0.84557 1.21003 0.79490 0.84131 0.85287 1.90732 1.39709 1.28199 1.87288 1.45787 1.53398 1.32302 1.04546 1.21824 0.99704 0.96681 0.84047 1.22079 0.98867 0.82858 0.91231 0.87855 1.86550 1.26509 1.27188 1.96548 1.21408 0.97232 0.95308 0.86723 1.42409 1.66597 1.28074 1.01163 1.19664 1.28153 1.05104 0.84997 0.90692 1.25589 1.01452 0.98109 1.01640 1.69834 1.43609 1.19326 1.28959 0.85068 0.77031 0.77691 0.79915 1.19117 1.21978 1.21970 1.20494 0.99970 0.95464 0.96962 1.21902 0.93612 1.01563 0.92775 1.22473 1.01425 0.95654 0.99422 1.23270 0.93387 0.93522 0.97604 1.67655 1.11929 1.39833 1.03684 1.22471 0.96765 0.92008 0.93527 0.92846 0.89596 0.89839 0.74665 0.91195 0.90895 0.76668 0.95315 0.95031 0.78978 0.93961 0.81825 0.81507 0.80768 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.91 71.98 0.64 -0.91 16 2 C -0.06 -0.83 2.92 -12.28 -0.04 -0.86 16 3 H 0.14 1.18 7.93 -2.39 -0.02 1.16 16 4 C 0.51 11.20 7.03 87.66 0.62 11.81 16 5 O -0.58 -18.00 15.13 -3.03 -0.05 -18.04 16 6 N -0.71 -13.84 5.40 -463.06 -2.50 -16.34 16 7 C 0.10 2.44 5.31 86.38 0.46 2.90 16 8 C 0.11 3.09 3.09 30.59 0.09 3.18 16 9 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 10 O -0.56 -16.27 13.03 -148.98 -1.94 -18.21 16 11 C 0.12 4.49 5.92 86.38 0.51 5.01 16 12 N -0.74 -36.84 5.49 -343.46 -1.89 -38.73 16 13 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 14 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 16 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 17 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 C -0.13 -2.30 4.40 -19.77 -0.09 -2.39 16 22 C -0.07 -1.00 9.81 22.47 0.22 -0.78 16 23 C -0.17 -2.22 10.11 22.36 0.23 -2.00 16 24 C 0.08 1.37 11.18 84.68 0.95 2.32 16 25 N -0.52 -12.74 10.36 -195.85 -2.03 -14.77 16 26 C 0.11 2.55 9.13 84.67 0.77 3.33 16 27 H 0.05 0.73 7.41 -2.39 -0.02 0.71 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.71 7.56 -2.39 -0.02 0.69 16 30 H 0.42 6.40 7.89 -92.71 -0.73 5.67 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.38 9.24 9.05 -74.06 -0.67 8.57 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.38 20.31 7.54 -92.70 -0.70 19.61 16 37 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 38 H 0.16 1.18 8.00 -2.91 -0.02 1.15 16 39 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.14 3.34 7.53 -2.91 -0.02 3.31 16 Total: -1.00 -76.62 350.66 -1.46 -78.08 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -1.04 Total: 33.97 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.67 Total: 4.84 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -6.13 Total: -128.67 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.99 Total: -36.25 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -76.62 -1.46 -78.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753933950.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.931 kcal (2) G-P(sol) polarization free energy of solvation -76.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds