Wall clock time and date at job start Fri Apr 10 2020 17:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.36944 * 119.99630 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99426 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00679 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99690 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47000 * 60.00025 * 11 9 7 13 13 H 1.48503 * 109.47381 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47152 * 300.00362 * 11 9 7 15 15 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 16 16 C 1.34778 * 119.99771 * 274.99826 * 15 2 1 17 17 O 1.21279 * 120.00041 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99935 * 180.02562 * 16 15 2 19 19 N 1.46501 * 109.47115 * 180.02562 * 18 16 15 20 20 C 1.35758 * 119.62698 * 90.00031 * 19 18 16 21 21 C 1.35354 * 120.70048 * 179.97438 * 20 19 18 22 22 C 1.40196 * 119.95077 * 0.02562 * 21 20 19 23 23 C 1.36400 * 119.26354 * 0.02562 * 22 21 20 24 24 C 1.34662 * 119.62185 * 269.72710 * 19 18 16 25 25 O 1.22061 * 119.98744 * 359.97438 * 24 19 18 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 31 31 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 32 32 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 33 33 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 34 34 H 0.96993 * 120.00341 * 179.97438 * 10 9 7 35 35 H 0.96998 * 120.00630 * 95.00428 * 15 2 1 36 36 H 1.08999 * 109.47030 * 300.00189 * 18 16 15 37 37 H 1.08995 * 109.47091 * 59.99897 * 18 16 15 38 38 H 1.08002 * 119.64823 * 359.97438 * 20 19 18 39 39 H 1.08005 * 120.02056 * 179.97438 * 21 20 19 40 40 H 1.07995 * 120.36852 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.34554 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3954 -1.3402 -2.7794 8 1 6.0938 -0.8600 -2.1101 9 6 5.8580 -1.9946 -3.9128 10 7 5.0068 -2.5794 -4.7288 11 14 7.6888 -2.0441 -4.2807 12 1 8.4003 -2.7152 -3.1633 13 1 7.9206 -2.7974 -5.5393 14 1 8.2009 -0.6584 -4.4322 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8581 1.1584 2.4117 18 6 2.6498 -0.7285 3.5875 19 7 2.6984 0.2127 4.7091 20 6 1.6124 0.3580 5.5108 21 6 1.6337 1.2209 6.5534 22 6 2.7858 1.9761 6.8136 23 6 3.8755 1.8295 6.0063 24 6 3.8216 0.9198 4.9365 25 8 4.7917 0.7741 4.2102 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4369 -1.3572 32 1 3.9995 -1.0728 -0.4258 33 1 3.4260 -1.7351 -3.1110 34 1 5.3301 -3.0363 -5.5209 35 1 2.2490 -1.6318 1.1527 36 1 1.9776 -1.5508 3.8325 37 1 3.6490 -1.1203 3.3980 38 1 0.7222 -0.2211 5.3146 39 1 0.7634 1.3281 7.1839 40 1 2.8101 2.6669 7.6433 41 1 4.7723 2.4022 6.1910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754035575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:19 Heat of formation + Delta-G solvation = -54.888390 kcal Electronic energy + Delta-G solvation = -23014.751777 eV Core-core repulsion = 19508.363855 eV Total energy + Delta-G solvation = -3506.387922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.48316 -40.69210 -38.05813 -37.86062 -36.17184 -35.47068 -33.69780 -32.35824 -30.83711 -29.56039 -29.10288 -25.92921 -24.89252 -24.09722 -23.28651 -22.23273 -21.60840 -19.33787 -18.65234 -18.55331 -18.29904 -17.40297 -17.08081 -16.73496 -16.29249 -16.18611 -15.62732 -15.48693 -15.25084 -15.12704 -15.02032 -14.69869 -14.30573 -13.83728 -13.39218 -13.19902 -13.11834 -12.99456 -12.91092 -12.90108 -12.72080 -12.41476 -12.32996 -12.05692 -11.96671 -11.67914 -11.53972 -11.09291 -10.99018 -10.78174 -10.16856 -9.05638 -8.96695 -8.00357 -5.29597 -0.07696 0.94745 1.43416 1.44078 1.46909 1.49827 1.53413 2.18278 2.51998 2.75550 3.32689 3.53067 3.63623 3.73456 3.79417 4.01195 4.05261 4.12646 4.16532 4.24409 4.35287 4.38900 4.53069 4.54243 4.61744 4.73105 4.84246 4.96995 5.04697 5.16380 5.18887 5.24489 5.31101 5.40041 5.43703 5.49745 5.67136 6.06608 6.22653 6.43390 6.97273 7.11836 7.29237 8.03115 8.28732 9.22524 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.003165 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.666909 B = 8844.736394 C = 9981.749543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.152 3.848 3 H 0.058 0.942 4 C -0.117 4.117 5 C 0.153 3.847 6 N -0.743 5.743 7 C -0.254 4.254 8 H 0.066 0.934 9 C -0.069 4.069 10 N -0.965 5.965 11 Si 0.972 3.028 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.282 1.282 15 N -0.706 5.706 16 C 0.500 3.500 17 O -0.576 6.576 18 C 0.069 3.931 19 N -0.481 5.481 20 C 0.136 3.864 21 C -0.232 4.232 22 C 0.009 3.991 23 C -0.288 4.288 24 C 0.494 3.506 25 O -0.616 6.616 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.081 0.919 31 H -0.002 1.002 32 H 0.020 0.980 33 H 0.377 0.623 34 H 0.254 0.746 35 H 0.416 0.584 36 H 0.181 0.819 37 H 0.119 0.881 38 H 0.204 0.796 39 H 0.186 0.814 40 H 0.169 0.831 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.773 2.586 25.857 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.046 3.954 3 H 0.076 0.924 4 C -0.155 4.155 5 C 0.026 3.974 6 N -0.387 5.387 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.262 4.262 10 N -0.615 5.615 11 Si 0.800 3.200 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.208 1.208 15 N -0.358 5.358 16 C 0.286 3.714 17 O -0.455 6.455 18 C -0.056 4.056 19 N -0.189 5.189 20 C 0.010 3.990 21 C -0.253 4.253 22 C -0.013 4.013 23 C -0.310 4.310 24 C 0.299 3.701 25 O -0.504 6.504 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.210 0.790 34 H 0.063 0.937 35 H 0.253 0.747 36 H 0.198 0.802 37 H 0.137 0.863 38 H 0.221 0.779 39 H 0.203 0.797 40 H 0.186 0.814 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.203 3.336 25.425 29.811 hybrid contribution 1.420 -0.324 -1.017 1.776 sum -13.783 3.011 24.408 28.192 Atomic orbital electron populations 1.22043 0.92709 1.03377 1.02502 1.20834 0.95386 0.95941 0.83202 0.92374 1.21899 0.94024 1.02137 0.97453 1.20758 0.93978 0.93786 0.88852 1.42508 1.04419 1.65301 1.26429 1.19536 0.85345 1.28126 1.05602 0.91609 1.25528 1.02066 1.00962 0.97609 1.69779 1.34641 1.41635 1.15457 0.85247 0.80058 0.77573 0.77101 1.20359 1.21414 1.20791 1.45964 1.66269 1.14846 1.08753 1.21145 0.77174 0.87253 0.85835 1.90717 1.51782 1.17408 1.85637 1.22036 1.07319 0.92583 0.83670 1.45099 1.13430 1.35384 1.25029 1.22783 0.90121 0.97042 0.89051 1.21211 1.01474 1.01009 1.01650 1.21892 0.90524 0.93384 0.95469 1.22090 1.03625 1.05735 0.99526 1.17705 0.82265 0.82864 0.87219 1.90944 1.37012 1.69895 1.52514 0.90847 0.90372 0.92794 0.89544 0.90083 0.98385 0.96163 0.79027 0.93710 0.74704 0.80184 0.86288 0.77934 0.79670 0.81397 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.48 71.98 0.68 -2.24 16 2 C 0.15 3.91 2.57 44.99 0.12 4.03 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 C -0.12 -3.48 4.87 30.60 0.15 -3.33 16 5 C 0.15 6.36 6.15 86.38 0.53 6.89 16 6 N -0.74 -38.84 5.60 -343.44 -1.92 -40.77 16 7 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 10 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 11 Si 0.97 47.47 29.55 68.60 2.03 49.49 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 N -0.71 -15.85 4.53 -442.53 -2.00 -17.85 16 16 C 0.50 12.54 7.86 87.66 0.69 13.23 16 17 O -0.58 -19.56 16.09 -3.03 -0.05 -19.61 16 18 C 0.07 1.22 5.82 85.63 0.50 1.72 16 19 N -0.48 -9.98 2.07 -655.06 -1.36 -11.34 16 20 C 0.14 1.54 10.28 83.42 0.86 2.40 16 21 C -0.23 -2.13 10.01 22.08 0.22 -1.91 16 22 C 0.01 0.12 10.10 22.32 0.23 0.34 16 23 C -0.29 -6.64 9.99 22.40 0.22 -6.42 16 24 C 0.49 14.76 7.40 84.82 0.63 15.39 16 25 O -0.62 -24.98 16.64 -5.51 -0.09 -25.07 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.02 0.84 7.75 -2.39 -0.02 0.83 16 33 H 0.38 20.31 7.67 -92.71 -0.71 19.60 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.42 7.26 8.60 -92.71 -0.80 6.46 16 36 H 0.18 0.92 8.01 -2.39 -0.02 0.90 16 37 H 0.12 2.51 7.38 -2.39 -0.02 2.49 16 38 H 0.20 0.40 8.04 -2.91 -0.02 0.38 16 39 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -89.45 353.08 2.55 -86.91 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.46 Total: 24.88 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.13 Total: 12.47 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -5.00 Total: -129.08 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.14 Total: -44.68 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -89.45 2.55 -86.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754035575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.020 kcal (2) G-P(sol) polarization free energy of solvation -89.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds