Wall clock time and date at job start Fri Apr 10 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40196 * 120.36657 * 2 1 4 4 C 1.35348 * 119.94831 * 179.76861 * 3 2 1 5 5 N 1.35767 * 120.70117 * 0.51731 * 4 3 2 6 6 C 1.46492 * 119.62473 * 179.75853 * 5 4 3 7 7 C 1.50703 * 109.47441 * 269.72525 * 6 5 4 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 H 1.08995 * 109.47013 * 324.72129 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72116 * 10 9 7 13 13 C 1.53004 * 109.47065 * 204.72115 * 10 9 7 14 14 N 1.46502 * 109.46925 * 55.00022 * 13 10 9 15 15 C 1.36936 * 119.99899 * 180.02562 * 14 13 10 16 16 H 1.07997 * 119.99841 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99864 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99982 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00171 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47089 * 89.99831 * 19 17 15 21 21 H 1.48502 * 109.47036 * 209.99796 * 19 17 15 22 22 H 1.48499 * 109.46833 * 330.00340 * 19 17 15 23 23 C 1.34661 * 120.74955 * 359.47972 * 5 4 3 24 24 O 1.22053 * 119.98458 * 180.27506 * 23 5 4 25 25 C 1.36400 * 120.36763 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.46683 * 269.97303 * 1 2 3 27 27 H 1.08995 * 109.46831 * 29.97308 * 1 2 3 28 28 H 1.08993 * 109.46876 * 149.97281 * 1 2 3 29 29 H 1.07999 * 120.02641 * 0.04809 * 3 2 1 30 30 H 1.08005 * 119.65109 * 180.27227 * 4 3 2 31 31 H 1.08998 * 109.47276 * 149.72441 * 6 5 4 32 32 H 1.09002 * 109.47526 * 29.72753 * 6 5 4 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 35 35 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 36 36 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 37 37 H 1.08997 * 109.47038 * 174.99692 * 13 10 9 38 38 H 1.08999 * 109.47047 * 295.00318 * 13 10 9 39 39 H 0.96997 * 120.00059 * 359.97438 * 14 13 10 40 40 H 0.96998 * 119.99735 * 179.97438 * 18 17 15 41 41 H 1.08000 * 120.34457 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5693 1.1998 0.0047 5 7 4.2539 0.0274 -0.0010 6 6 5.7187 0.0442 -0.0011 7 6 6.2211 0.0501 -1.4219 8 8 5.4329 0.0406 -2.3437 9 7 7.5461 0.0649 -1.6682 10 6 8.0342 0.0767 -3.0494 11 1 7.3704 -0.5205 -3.6745 12 6 8.0644 1.5161 -3.5674 13 6 9.4457 -0.5120 -3.0966 14 7 9.4389 -1.8459 -2.4908 15 6 10.5982 -2.5713 -2.4193 16 1 11.5173 -2.1602 -2.8099 17 6 10.5918 -3.8349 -1.8449 18 7 11.7060 -4.5324 -1.7766 19 14 9.0021 -4.5456 -1.1687 20 1 8.3026 -5.3006 -2.2392 21 1 9.3094 -5.4588 -0.0387 22 1 8.1306 -3.4423 -0.6907 23 6 3.6018 -1.1508 -0.0011 24 8 4.2313 -2.1964 -0.0012 25 6 2.1967 -1.1769 -0.0005 26 1 -0.3632 -0.0005 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6823 2.1486 0.0008 30 1 4.1104 2.1344 0.0092 31 1 6.0923 -0.8415 0.5127 32 1 6.0719 0.9383 0.5128 33 1 8.1764 0.0721 -0.9309 34 1 8.7282 2.1133 -2.9423 35 1 8.4280 1.5249 -4.5949 36 1 7.0589 1.9354 -3.5338 37 1 9.7743 -0.5854 -4.1332 38 1 10.1276 0.1345 -2.5441 39 1 8.6135 -2.2149 -2.1397 40 1 11.7016 -5.4152 -1.3749 41 1 1.6683 -2.1188 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754285983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:26 Heat of formation + Delta-G solvation = -23.349429 kcal Electronic energy + Delta-G solvation = -23549.924221 eV Core-core repulsion = 20044.903931 eV Total energy + Delta-G solvation = -3505.020290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59746 -39.54117 -37.10765 -36.51578 -35.31545 -33.78928 -31.79918 -30.80456 -30.21279 -29.42789 -27.00879 -25.98400 -23.86504 -22.52643 -21.91483 -21.09394 -20.38401 -18.07162 -17.68860 -17.54417 -17.27482 -16.15909 -15.90753 -15.28462 -15.15272 -14.62871 -14.40645 -14.30795 -14.05825 -13.81766 -13.50958 -13.09618 -12.85986 -12.71263 -12.56902 -12.46008 -12.39731 -12.12363 -11.93786 -11.89017 -11.81671 -11.13668 -10.85088 -10.54959 -10.32305 -10.10570 -10.01021 -9.65065 -9.61100 -9.00300 -8.90788 -8.09323 -7.28012 -5.78827 -3.15734 0.66946 1.75880 2.33417 2.56650 3.20339 3.42696 3.48356 3.53915 3.61934 4.27476 4.39920 4.51780 4.60173 4.65396 4.78734 4.93084 5.02050 5.03736 5.19632 5.24313 5.27464 5.33900 5.44655 5.53562 5.54976 5.76039 5.78317 5.84562 5.89193 5.97191 6.18788 6.20889 6.30619 6.35715 6.52711 6.72453 6.94166 7.53904 7.95367 7.98999 8.20850 8.39741 9.18105 9.90775 10.09327 11.38910 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018423 B = 0.004286 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.477111 B = 6531.825929 C = 7718.191795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.012 3.988 3 C -0.233 4.233 4 C 0.146 3.854 5 N -0.481 5.481 6 C 0.067 3.933 7 C 0.501 3.499 8 O -0.533 6.533 9 N -0.709 5.709 10 C 0.130 3.870 11 H 0.087 0.913 12 C -0.156 4.156 13 C 0.150 3.850 14 N -0.756 5.756 15 C -0.250 4.250 16 H 0.091 0.909 17 C 0.009 3.991 18 N -0.932 5.932 19 Si 0.883 3.117 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.519 3.481 24 O -0.544 6.544 25 C -0.246 4.246 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.160 0.840 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.364 0.636 40 H 0.260 0.740 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.741 18.179 5.764 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 C -0.256 4.256 4 C 0.019 3.981 5 N -0.191 5.191 6 C -0.059 4.059 7 C 0.285 3.715 8 O -0.410 6.410 9 N -0.361 5.361 10 C 0.025 3.975 11 H 0.105 0.895 12 C -0.214 4.214 13 C 0.022 3.978 14 N -0.402 5.402 15 C -0.379 4.379 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.579 5.579 19 Si 0.713 3.287 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.202 1.202 23 C 0.321 3.679 24 O -0.425 6.425 25 C -0.267 4.267 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.177 0.823 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.197 0.803 40 H 0.070 0.930 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.604 17.395 5.056 26.692 hybrid contribution -0.673 -0.594 0.796 1.200 sum -20.277 16.801 5.853 26.976 Atomic orbital electron populations 1.20912 0.90434 1.03517 1.02957 1.20181 0.96694 0.92669 0.89591 1.20476 0.92321 0.98822 1.13979 1.21865 0.93590 0.89462 0.93173 1.45050 1.07199 1.07282 1.59614 1.21842 0.79677 1.07504 0.96829 1.20588 0.83216 0.76745 0.90917 1.90727 1.55282 1.49357 1.45626 1.45974 1.06226 1.74060 1.09862 1.21357 0.97186 0.96849 0.82087 0.89477 1.22076 1.01878 0.95937 1.01546 1.20960 0.91808 0.87218 0.97826 1.42729 1.09038 1.15526 1.72937 1.19018 0.88032 0.97264 1.33602 0.89126 1.24659 0.96488 0.96825 1.00782 1.69705 1.25412 1.12762 1.50052 0.86599 0.83836 0.79265 0.78989 1.21043 1.21618 1.20232 1.17130 0.89392 0.82529 0.78845 1.91015 1.69025 1.30199 1.52275 1.21927 0.92238 0.99580 1.12987 0.90202 0.90828 0.90854 0.83836 0.82278 0.85084 0.86036 0.75894 0.92326 0.91346 0.92510 0.93922 0.94884 0.80324 0.92978 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.03 36.01 0.36 -0.39 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -1.89 9.71 -39.88 -0.39 -2.28 16 4 C 0.15 1.30 10.28 -16.84 -0.17 1.13 16 5 N -0.48 -6.10 2.07 -121.07 -0.25 -6.35 16 6 C 0.07 0.79 5.81 -5.20 -0.03 0.76 16 7 C 0.50 7.60 7.86 -10.98 -0.09 7.51 16 8 O -0.53 -9.99 16.10 5.55 0.09 -9.90 16 9 N -0.71 -10.28 4.52 -53.81 -0.24 -10.52 16 10 C 0.13 2.02 2.73 -67.93 -0.19 1.84 16 11 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 12 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 13 C 0.15 2.75 5.82 -4.04 -0.02 2.73 16 14 N -0.76 -17.91 5.24 -59.91 -0.31 -18.22 16 15 C -0.25 -7.07 10.47 -15.06 -0.16 -7.23 16 16 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 18 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 19 Si 0.88 23.45 27.74 -169.99 -4.71 18.73 16 20 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 22 H -0.28 -7.06 6.52 56.52 0.37 -6.69 16 23 C 0.52 8.35 7.40 -15.44 -0.11 8.24 16 24 O -0.54 -11.28 16.64 4.87 0.08 -11.20 16 25 C -0.25 -3.17 9.65 -39.38 -0.38 -3.55 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 28 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.16 0.81 8.03 -52.48 -0.42 0.38 16 31 H 0.13 1.72 7.39 -51.93 -0.38 1.34 16 32 H 0.12 0.79 8.01 -51.93 -0.42 0.37 16 33 H 0.41 5.25 8.60 -40.82 -0.35 4.90 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 8.81 5.20 -40.82 -0.21 8.59 16 40 H 0.26 7.89 8.31 -40.82 -0.34 7.56 16 41 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -39.03 349.98 -6.83 -45.86 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.99 Total: 8.27 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -1.54 Total: 6.87 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -0.03 Total: -63.91 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -39.03 -6.83 -45.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.512 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds