Wall clock time and date at job start Fri Apr 10 2020 17:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.45753 * 2 1 4 4 C 1.34773 * 119.99949 * 60.03231 * 3 2 1 5 5 O 1.21279 * 120.00009 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99996 * 179.97438 * 4 3 2 7 7 C 1.50697 * 109.47024 * 179.97438 * 6 4 3 8 8 C 1.41376 * 128.00840 * 269.67139 * 7 6 4 9 9 N 1.30171 * 106.39667 * 179.89863 * 8 7 6 10 10 O 1.20917 * 111.60453 * 0.39898 * 9 8 7 11 11 C 1.34038 * 111.56680 * 359.73685 * 10 9 8 12 12 C 1.53046 * 109.45808 * 240.03049 * 2 1 3 13 13 C 1.53193 * 109.33731 * 178.61168 * 12 2 1 14 14 N 1.46998 * 108.73842 * 54.61716 * 13 12 2 15 15 C 1.36935 * 120.60901 * 126.38672 * 14 13 12 16 16 H 1.07998 * 119.99952 * 207.67649 * 15 14 13 17 17 C 1.38815 * 119.99918 * 27.68672 * 15 14 13 18 18 N 1.31614 * 120.00332 * 17.35531 * 17 15 14 19 19 Si 1.86808 * 119.99812 * 197.35895 * 17 15 14 20 20 H 1.48506 * 109.46866 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47167 * 119.99620 * 19 17 15 22 22 H 1.48494 * 109.47081 * 240.00049 * 19 17 15 23 23 C 1.46925 * 118.75739 * 306.41053 * 14 13 12 24 24 C 1.53041 * 109.45238 * 119.96628 * 2 1 3 25 25 H 1.09000 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46930 * 299.97276 * 1 2 3 27 27 H 1.08995 * 109.47556 * 59.96633 * 1 2 3 28 28 H 0.96999 * 119.99771 * 240.02652 * 3 2 1 29 29 H 1.09000 * 109.47116 * 300.00262 * 6 4 3 30 30 H 1.09007 * 109.47003 * 59.99726 * 6 4 3 31 31 H 1.08006 * 126.80190 * 0.04627 * 8 7 6 32 32 H 1.08002 * 126.77587 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.49270 * 298.57837 * 12 2 1 34 34 H 1.08999 * 109.49764 * 58.64005 * 12 2 1 35 35 H 1.08996 * 109.58385 * 174.44127 * 13 12 2 36 36 H 1.08998 * 109.58378 * 294.86296 * 13 12 2 37 37 H 0.97007 * 120.00009 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.58684 * 293.82104 * 23 14 13 39 39 H 1.08997 * 109.69945 * 173.46562 * 23 14 13 40 40 H 1.08999 * 109.49694 * 301.33030 * 24 2 1 41 41 H 1.08999 * 109.49566 * 61.39243 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9957 1.8141 1.9208 6 6 2.1952 3.6318 1.0114 7 6 1.6928 4.3420 2.2419 8 6 0.4961 5.0793 2.3938 9 7 0.4817 5.5071 3.6232 10 8 1.4687 5.1574 4.2279 11 6 2.2860 4.4269 3.4566 12 6 2.0398 -0.7209 -1.2501 13 6 3.5714 -0.6890 -1.2649 14 7 4.0676 -1.2492 0.0003 15 6 4.9753 -2.2746 0.0003 16 1 5.0080 -2.9667 0.8287 17 6 5.8534 -2.4241 -1.0643 18 7 6.0599 -1.4226 -1.8928 19 14 6.7421 -4.0471 -1.3210 20 1 6.3398 -5.0050 -0.2599 21 1 6.3845 -4.6023 -2.6511 22 1 8.2088 -3.8241 -1.2557 23 6 3.5711 -0.6889 1.2644 24 6 2.0397 -0.7208 1.2501 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8902 27 1 -0.3634 0.5143 -0.8896 28 1 2.5753 1.6988 -0.7277 29 1 3.2852 3.6317 1.0111 30 1 1.8317 4.1459 0.1216 31 1 -0.2580 5.2514 1.6400 32 1 3.2312 3.9921 3.7464 33 1 1.6975 -1.7556 -1.2383 34 1 1.6568 -0.2211 -2.1398 35 1 3.9411 -1.2848 -2.0994 36 1 3.9144 0.3405 -1.3680 37 1 6.6739 -1.5270 -2.6366 38 1 3.9142 0.3406 1.3675 39 1 3.9412 -1.2828 2.1001 40 1 1.6570 -0.2207 2.1398 41 1 1.6969 -1.7554 1.2387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754628328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:35 Heat of formation + Delta-G solvation = 47.522074 kcal Electronic energy + Delta-G solvation = -24321.805677 eV Core-core repulsion = 20819.858606 eV Total energy + Delta-G solvation = -3501.947071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.96267 -40.12833 -37.52037 -34.73656 -34.29261 -32.37952 -31.90037 -30.92210 -29.96701 -28.50888 -27.44907 -24.13222 -23.10297 -22.44435 -22.20088 -21.01377 -20.21020 -18.70168 -17.96876 -17.63122 -17.01612 -16.63224 -15.31657 -15.23594 -14.88732 -14.53981 -13.99588 -13.70894 -13.56556 -13.41859 -13.28591 -13.11741 -12.93750 -12.54389 -12.11869 -11.81028 -11.67260 -11.34744 -11.31526 -11.16931 -10.96818 -10.76300 -10.42622 -10.36850 -10.29450 -9.90848 -9.86263 -9.66189 -9.52532 -9.07912 -8.65499 -8.49911 -6.70787 -5.84239 -3.24994 1.46359 2.17656 2.86621 3.18679 3.33737 3.42411 3.44654 3.55901 4.22448 4.46442 4.62620 4.71141 4.96307 5.09936 5.28570 5.32868 5.34135 5.42860 5.51091 5.56151 5.59254 5.63906 5.93036 5.98903 6.02526 6.15909 6.27291 6.29998 6.39049 6.49671 6.65500 6.67576 6.79919 6.92314 7.05211 7.25102 7.53755 7.75695 7.87369 8.18518 8.40253 8.51636 9.17038 9.80616 10.37208 11.24364 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.003816 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.557420 B = 7334.954358 C = 7749.257669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.185 3.815 3 N -0.709 5.709 4 C 0.515 3.485 5 O -0.537 6.537 6 C -0.068 4.068 7 C -0.179 4.179 8 C 0.003 3.997 9 N -0.370 5.370 10 O 0.094 5.906 11 C -0.044 4.044 12 C -0.146 4.146 13 C 0.172 3.828 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.152 3.848 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.047 0.953 28 H 0.400 0.600 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.216 0.784 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.016 0.984 37 H 0.252 0.748 38 H 0.014 0.986 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 10.591 2.844 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.100 3.900 3 N -0.360 5.360 4 C 0.300 3.700 5 O -0.414 6.414 6 C -0.109 4.109 7 C -0.183 4.183 8 C -0.176 4.176 9 N -0.075 5.075 10 O 0.030 5.970 11 C -0.126 4.126 12 C -0.186 4.186 13 C 0.046 3.954 14 N -0.314 5.314 15 C -0.379 4.379 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.549 5.549 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.026 3.974 24 C -0.183 4.183 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.236 0.764 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.203 0.797 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.352 11.015 4.100 15.020 hybrid contribution 1.215 -1.200 -1.387 2.200 sum -8.136 9.815 2.714 13.034 Atomic orbital electron populations 1.22219 0.95512 1.01851 1.02235 1.20257 0.92501 0.80147 0.97131 1.46147 1.52945 1.12158 1.24796 1.20290 0.80586 0.86901 0.82214 1.90642 1.37983 1.76997 1.35774 1.19946 1.02780 0.92755 0.95396 1.20733 0.96567 1.04035 0.96963 1.24874 0.99021 0.98987 0.94712 1.73832 1.05342 1.20277 1.08006 1.84789 1.23117 1.51873 1.37217 1.25797 0.98984 0.97519 0.90296 1.22527 1.01432 1.00024 0.94589 1.20753 0.86811 0.97043 0.90759 1.44064 1.48229 1.39681 0.99428 1.19250 1.09680 1.02923 1.06079 0.91703 1.24998 0.97233 0.97453 0.99945 1.70022 1.37871 1.28994 1.18032 0.86251 0.79152 0.83786 0.77771 1.20276 1.21580 1.21765 1.20810 0.90856 0.95986 0.89784 1.22391 0.98960 0.99640 0.97281 0.92330 0.90970 0.93416 0.76447 0.87383 0.87704 0.79658 0.76788 0.91093 0.92785 0.89277 0.96607 0.93749 0.96813 0.93192 0.90924 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.40 37.16 0.31 -2.04 16 2 C 0.18 2.96 0.66 -131.77 -0.09 2.87 16 3 N -0.71 -9.99 4.10 -47.56 -0.19 -10.19 16 4 C 0.51 7.07 7.24 -10.99 -0.08 6.99 16 5 O -0.54 -9.12 12.25 5.56 0.07 -9.05 16 6 C -0.07 -0.68 6.28 -29.03 -0.18 -0.86 16 7 C -0.18 -1.99 4.82 -104.43 -0.50 -2.49 16 8 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 9 N -0.37 -4.94 12.07 30.35 0.37 -4.57 16 10 O 0.09 1.16 11.20 17.18 0.19 1.35 16 11 C -0.04 -0.46 12.26 29.74 0.36 -0.10 16 12 C -0.15 -2.52 4.96 -26.61 -0.13 -2.66 16 13 C 0.17 3.73 5.04 -3.67 -0.02 3.71 16 14 N -0.59 -14.04 3.00 -172.27 -0.52 -14.55 16 15 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 16 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -25.01 11.19 55.49 0.62 -24.39 16 19 Si 0.90 21.13 29.59 -169.99 -5.03 16.10 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 C 0.15 3.15 6.26 -3.71 -0.02 3.12 16 24 C -0.14 -2.59 4.67 -26.61 -0.12 -2.71 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.40 5.18 7.27 -40.82 -0.30 4.88 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.19 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 2.22 6.04 -51.93 -0.31 1.90 16 36 H 0.02 0.34 6.94 -51.93 -0.36 -0.02 16 37 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.01 0.29 7.74 -51.93 -0.40 -0.11 16 39 H 0.05 1.05 7.94 -51.93 -0.41 0.64 16 40 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -31.42 329.55 -6.22 -37.64 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.78 Total: 3.85 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -0.91 Total: -1.15 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.28 Total: -53.70 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.26 Total: -7.70 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.42 -6.22 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754628328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds