Wall clock time and date at job start Fri Apr 10 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35456 * 125.56630 * 2 1 4 4 C 1.39838 * 107.86653 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08442 * 359.97438 * 4 3 2 6 6 C 1.46679 * 126.23240 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99881 * 184.98698 * 6 5 4 8 8 N 1.34769 * 119.99936 * 4.99497 * 6 5 4 9 9 C 1.46505 * 120.00203 * 185.01957 * 8 6 5 10 10 C 1.52995 * 109.47119 * 180.02562 * 9 8 6 11 11 O 1.42895 * 113.28122 * 313.06069 * 10 9 8 12 12 C 1.53502 * 114.20121 * 180.02562 * 10 9 8 13 13 N 1.47069 * 87.98556 * 220.34184 * 12 10 9 14 14 C 1.36936 * 136.06274 * 207.08808 * 13 12 10 15 15 H 1.08001 * 119.99817 * 354.89102 * 14 13 12 16 16 C 1.38804 * 120.00279 * 174.89392 * 14 13 12 17 17 N 1.31618 * 120.00276 * 184.29477 * 16 14 13 18 18 Si 1.86803 * 120.00191 * 4.56900 * 16 14 13 19 19 H 1.48491 * 109.47408 * 174.10263 * 18 16 14 20 20 H 1.48501 * 109.46788 * 294.10652 * 18 16 14 21 21 H 1.48503 * 109.46991 * 54.09932 * 18 16 14 22 22 C 1.47074 * 87.88397 * 27.34244 * 13 12 10 23 23 N 1.35540 * 125.56420 * 180.33725 * 2 1 3 24 24 C 1.46499 * 125.67657 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46643 * 89.98120 * 1 2 3 26 26 H 1.08989 * 109.47120 * 209.98131 * 1 2 3 27 27 H 1.09002 * 109.47165 * 329.98593 * 1 2 3 28 28 H 1.08001 * 126.06415 * 0.05611 * 3 2 1 29 29 H 1.07992 * 126.45557 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00198 * 5.02110 * 8 6 5 31 31 H 1.09001 * 109.46862 * 59.99706 * 9 8 6 32 32 H 1.09001 * 109.46753 * 300.00058 * 9 8 6 33 33 H 0.96701 * 114.00120 * 46.93946 * 11 10 9 34 34 H 1.09005 * 113.46455 * 105.56604 * 12 10 9 35 35 H 1.08994 * 113.52317 * 335.13043 * 12 10 9 36 36 H 0.97007 * 119.99754 * 5.27437 * 17 16 14 37 37 H 1.08997 * 113.46678 * 87.43572 * 22 13 12 38 38 H 1.08998 * 113.47036 * 217.87914 * 22 13 12 39 39 H 1.08996 * 109.46996 * 274.99178 * 24 23 2 40 40 H 1.08998 * 109.47191 * 34.99318 * 24 23 2 41 41 H 1.09000 * 109.47148 * 154.99340 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7860 -1.5815 -0.0013 7 8 4.6432 -2.7867 -0.0926 8 7 6.0226 -1.0552 0.0990 9 6 7.1988 -1.9215 -0.0123 10 6 8.4679 -1.0801 0.1369 11 8 8.4522 0.1106 -0.6529 12 6 9.7715 -1.8843 0.0365 13 7 10.3030 -1.0610 1.1331 14 6 11.5422 -0.6514 1.5474 15 1 12.4271 -1.0202 1.0500 16 6 11.6612 0.2377 2.6067 17 7 12.8458 0.6970 2.9506 18 14 10.1410 0.7765 3.5491 19 1 10.5474 1.6071 4.7110 20 1 9.2609 1.5719 2.6557 21 1 9.4061 -0.4211 4.0296 22 6 8.9182 -0.8764 1.5929 23 7 2.2953 -1.1026 -0.0065 24 6 1.8242 -2.4897 -0.0152 25 1 -0.3632 0.0003 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8899 0.5141 28 1 1.9545 2.1268 0.0009 29 1 4.5024 1.3091 -0.0004 30 1 6.1339 -0.1026 0.2450 31 1 7.1989 -2.4104 -0.9865 32 1 7.1694 -2.6766 0.7732 33 1 7.6297 0.6149 -0.5879 34 1 10.2977 -1.7420 -0.9074 35 1 9.6555 -2.9356 0.2999 36 1 13.6254 0.4752 2.4176 37 1 8.5763 -1.6618 2.2668 38 1 8.7174 0.1245 1.9749 39 1 1.6223 -2.8112 1.0065 40 1 0.9104 -2.5594 -0.6053 41 1 2.5894 -3.1306 -0.4533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754763415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:38 Heat of formation + Delta-G solvation = 36.398252 kcal Electronic energy + Delta-G solvation = -23528.862843 eV Core-core repulsion = 20026.433407 eV Total energy + Delta-G solvation = -3502.429436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.68934 -39.86973 -38.70020 -35.34819 -34.33322 -33.00444 -32.29916 -32.00466 -29.24398 -27.23129 -26.72225 -25.54652 -25.40485 -22.35230 -21.42918 -20.50719 -19.71014 -19.43921 -18.31200 -17.49197 -16.49776 -16.21107 -16.01297 -15.56444 -15.02732 -14.87281 -14.48753 -14.06986 -13.80684 -13.62240 -13.50552 -13.41302 -13.27514 -13.11375 -13.06990 -12.66292 -12.29145 -12.19918 -12.09004 -12.03152 -11.64691 -11.04138 -10.55130 -10.33401 -10.06318 -10.02637 -9.31887 -9.15636 -8.97236 -8.95353 -8.87294 -8.26990 -7.16925 -6.29893 -3.22351 1.25645 2.37438 2.46244 3.17616 3.24368 3.36911 3.42988 3.64097 4.23828 4.45565 4.52292 4.55813 4.59388 4.64498 4.78651 4.81728 4.95268 5.03058 5.14284 5.18588 5.27471 5.36112 5.49110 5.49340 5.51204 5.77820 5.85901 5.94554 6.03348 6.09407 6.15789 6.27901 6.32952 6.51524 6.57367 6.76840 6.96213 7.06805 7.29785 7.84861 8.03911 8.23776 8.97810 9.49719 10.33101 11.21818 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.003582 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.518392 B = 7815.196737 C = 8351.078951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.040 3.960 3 C -0.205 4.205 4 C -0.136 4.136 5 C -0.054 4.054 6 C 0.592 3.408 7 O -0.551 6.551 8 N -0.715 5.715 9 C 0.109 3.891 10 C 0.073 3.927 11 O -0.517 6.517 12 C 0.140 3.860 13 N -0.617 5.617 14 C -0.299 4.299 15 H 0.084 0.916 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.075 2.925 19 H -0.295 1.295 20 H -0.291 1.291 21 H -0.291 1.291 22 C 0.068 3.932 23 N -0.407 5.407 24 C 0.060 3.940 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.400 0.600 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.363 0.637 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.714 -2.287 -7.183 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.229 4.229 4 C -0.163 4.163 5 C -0.167 4.167 6 C 0.380 3.620 7 O -0.431 6.431 8 N -0.368 5.368 9 C -0.016 4.016 10 C 0.029 3.971 11 O -0.321 6.321 12 C 0.012 3.988 13 N -0.345 5.345 14 C -0.425 4.425 15 H 0.102 0.898 16 C -0.223 4.223 17 N -0.577 5.577 18 Si 0.908 3.092 19 H -0.223 1.223 20 H -0.220 1.220 21 H -0.218 1.218 22 C -0.058 4.058 23 N -0.081 5.081 24 C -0.081 4.081 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.160 0.840 29 H 0.163 0.837 30 H 0.236 0.764 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.209 0.791 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -26.494 -2.787 -6.036 27.315 hybrid contribution 0.042 -0.343 -1.031 1.087 sum -26.451 -3.130 -7.067 27.557 Atomic orbital electron populations 1.20379 0.87777 1.03488 1.02826 1.20583 0.93792 0.85875 1.07492 1.20625 0.92429 0.97805 1.12011 1.21374 0.98059 0.91912 1.04926 1.19964 0.84276 0.93550 1.18902 1.16930 0.82159 0.86730 0.76148 1.90757 1.86158 1.14807 1.51340 1.45583 1.05161 1.12211 1.73819 1.21994 0.82744 0.93556 1.03286 1.23253 0.93546 0.86870 0.93382 1.86687 1.40900 1.36403 1.68070 1.22333 0.88754 0.93833 0.93831 1.45791 1.01279 1.58037 1.29345 1.20145 0.81127 1.23776 1.17418 0.89847 1.25689 1.03308 0.95731 0.97611 1.70915 0.98560 1.47175 1.41094 0.83657 0.73954 0.75944 0.75619 1.22250 1.22018 1.21811 1.23588 0.87419 1.00578 0.94170 1.43744 1.04573 1.06596 1.53182 1.22321 1.02216 0.79966 1.03591 0.90774 0.91646 0.89778 0.83965 0.83682 0.76435 0.90321 0.89723 0.79080 0.92327 0.92693 0.92913 0.93093 0.92112 0.90741 0.90180 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 9.89 36.01 0.36 -0.13 16 2 C 0.04 0.37 6.87 -81.95 -0.56 -0.20 16 3 C -0.20 -1.96 10.71 -39.98 -0.43 -2.39 16 4 C -0.14 -1.42 10.35 -39.12 -0.40 -1.83 16 5 C -0.05 -0.65 6.89 -81.98 -0.56 -1.22 16 6 C 0.59 8.03 7.77 -12.86 -0.10 7.93 16 7 O -0.55 -8.76 14.56 5.19 0.08 -8.69 16 8 N -0.72 -8.81 5.32 -61.62 -0.33 -9.13 16 9 C 0.11 1.51 5.43 -4.04 -0.02 1.48 16 10 C 0.07 1.24 1.74 -89.97 -0.16 1.08 16 11 O -0.52 -8.86 13.56 -35.23 -0.48 -9.33 16 12 C 0.14 2.76 8.10 -8.50 -0.07 2.70 16 13 N -0.62 -15.43 3.69 -184.55 -0.68 -16.11 16 14 C -0.30 -8.80 11.09 -15.06 -0.17 -8.97 16 15 H 0.08 2.58 8.05 -52.49 -0.42 2.16 16 16 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 17 N -0.94 -29.97 13.70 55.49 0.76 -29.21 16 18 Si 1.07 27.17 25.12 -169.99 -4.27 22.91 16 19 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.29 -6.87 6.30 56.52 0.36 -6.51 16 21 H -0.29 -6.89 6.70 56.52 0.38 -6.51 16 22 C 0.07 1.42 5.36 -8.36 -0.04 1.38 16 23 N -0.41 -4.38 3.16 -115.62 -0.37 -4.75 16 24 C 0.06 0.52 10.27 59.85 0.61 1.13 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.31 7.77 -51.94 -0.40 -0.09 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.15 1.19 7.48 -52.49 -0.39 0.80 16 30 H 0.40 4.12 5.89 -40.82 -0.24 3.88 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 33 H 0.36 4.43 7.20 45.56 0.33 4.76 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 37 H 0.05 1.02 7.85 -51.93 -0.41 0.61 16 38 H 0.06 1.32 4.03 -51.93 -0.21 1.11 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.47 7.84 -51.93 -0.41 0.06 16 41 H 0.11 1.15 5.97 -51.93 -0.31 0.84 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -36.98 334.77 -6.94 -43.92 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.05 Total: 5.23 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.64 Total: 0.13 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.61 Total: -59.21 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.40 Total: -18.02 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.27 Total: 22.91 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.98 -6.94 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.319 kcal (2) G-P(sol) polarization free energy of solvation -36.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds