Wall clock time and date at job start Fri Apr 10 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35456 * 125.56630 * 2 1 4 4 C 1.39838 * 107.86653 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08442 * 359.97438 * 4 3 2 6 6 C 1.46679 * 126.23240 * 179.97438 * 5 4 3 7 7 O 1.21700 * 119.99881 * 184.98698 * 6 5 4 8 8 N 1.34769 * 119.99936 * 4.99497 * 6 5 4 9 9 C 1.46505 * 120.00203 * 185.01957 * 8 6 5 10 10 C 1.52995 * 109.47119 * 180.02562 * 9 8 6 11 11 O 1.42895 * 113.28122 * 313.06069 * 10 9 8 12 12 C 1.53502 * 114.20121 * 180.02562 * 10 9 8 13 13 N 1.47069 * 87.98556 * 220.34184 * 12 10 9 14 14 C 1.36936 * 136.06274 * 207.08808 * 13 12 10 15 15 H 1.08001 * 119.99817 * 354.89102 * 14 13 12 16 16 C 1.38804 * 120.00279 * 174.89392 * 14 13 12 17 17 N 1.31618 * 120.00276 * 184.29477 * 16 14 13 18 18 Si 1.86803 * 120.00191 * 4.56900 * 16 14 13 19 19 H 1.48491 * 109.47408 * 174.10263 * 18 16 14 20 20 H 1.48501 * 109.46788 * 294.10652 * 18 16 14 21 21 H 1.48503 * 109.46991 * 54.09932 * 18 16 14 22 22 C 1.47074 * 87.88397 * 27.34244 * 13 12 10 23 23 N 1.35540 * 125.56420 * 180.33725 * 2 1 3 24 24 C 1.46499 * 125.67657 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46643 * 89.98120 * 1 2 3 26 26 H 1.08989 * 109.47120 * 209.98131 * 1 2 3 27 27 H 1.09002 * 109.47165 * 329.98593 * 1 2 3 28 28 H 1.08001 * 126.06415 * 0.05611 * 3 2 1 29 29 H 1.07992 * 126.45557 * 180.02562 * 4 3 2 30 30 H 0.97005 * 120.00198 * 5.02110 * 8 6 5 31 31 H 1.09001 * 109.46862 * 59.99706 * 9 8 6 32 32 H 1.09001 * 109.46753 * 300.00058 * 9 8 6 33 33 H 0.96701 * 114.00120 * 46.93946 * 11 10 9 34 34 H 1.09005 * 113.46455 * 105.56604 * 12 10 9 35 35 H 1.08994 * 113.52317 * 335.13043 * 12 10 9 36 36 H 0.97007 * 119.99754 * 5.27437 * 17 16 14 37 37 H 1.08997 * 113.46678 * 87.43572 * 22 13 12 38 38 H 1.08998 * 113.47036 * 217.87914 * 22 13 12 39 39 H 1.08996 * 109.46996 * 274.99178 * 24 23 2 40 40 H 1.08998 * 109.47191 * 34.99318 * 24 23 2 41 41 H 1.09000 * 109.47148 * 154.99340 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1019 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0004 6 6 4.7860 -1.5815 -0.0013 7 8 4.6432 -2.7867 -0.0926 8 7 6.0226 -1.0552 0.0990 9 6 7.1988 -1.9215 -0.0123 10 6 8.4679 -1.0801 0.1369 11 8 8.4522 0.1106 -0.6529 12 6 9.7715 -1.8843 0.0365 13 7 10.3030 -1.0610 1.1331 14 6 11.5422 -0.6514 1.5474 15 1 12.4271 -1.0202 1.0500 16 6 11.6612 0.2377 2.6067 17 7 12.8458 0.6970 2.9506 18 14 10.1410 0.7765 3.5491 19 1 10.5474 1.6071 4.7110 20 1 9.2609 1.5719 2.6557 21 1 9.4061 -0.4211 4.0296 22 6 8.9182 -0.8764 1.5929 23 7 2.2953 -1.1026 -0.0065 24 6 1.8242 -2.4897 -0.0152 25 1 -0.3632 0.0003 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8899 0.5141 28 1 1.9545 2.1268 0.0009 29 1 4.5024 1.3091 -0.0004 30 1 6.1339 -0.1026 0.2450 31 1 7.1989 -2.4104 -0.9865 32 1 7.1694 -2.6766 0.7732 33 1 7.6297 0.6149 -0.5879 34 1 10.2977 -1.7420 -0.9074 35 1 9.6555 -2.9356 0.2999 36 1 13.6254 0.4752 2.4176 37 1 8.5763 -1.6618 2.2668 38 1 8.7174 0.1245 1.9749 39 1 1.6223 -2.8112 1.0065 40 1 0.9104 -2.5594 -0.6053 41 1 2.5894 -3.1306 -0.4533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754763415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:38 Heat of formation + Delta-G solvation = 6.502860 kcal Electronic energy + Delta-G solvation = -23530.159204 eV Core-core repulsion = 20026.433407 eV Total energy + Delta-G solvation = -3503.725797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.43937 -41.22038 -39.87549 -36.81374 -35.46640 -34.45400 -33.71898 -32.65912 -30.70601 -28.48769 -27.39220 -27.18390 -26.59814 -23.56790 -22.82372 -21.40607 -21.19189 -20.30129 -19.72753 -19.08063 -17.91377 -17.25236 -16.87061 -16.83044 -16.27874 -15.99904 -15.73006 -15.60753 -15.17384 -14.97019 -14.61258 -14.43038 -14.12551 -14.11019 -13.93584 -13.60622 -13.53955 -13.31422 -12.92069 -12.89660 -12.81978 -12.61422 -12.38957 -11.88632 -11.72925 -11.32151 -11.14752 -11.03410 -10.61529 -10.25954 -9.68693 -9.23833 -9.00071 -8.65962 -5.49130 0.43430 1.34445 1.46951 1.58845 1.66893 1.75327 2.29846 2.34912 2.53480 2.86875 2.97562 3.14913 3.28707 3.71096 3.74791 3.95378 3.96535 4.24606 4.28870 4.35392 4.47773 4.53764 4.55203 4.62839 4.66088 4.69251 4.76523 4.78624 4.81263 4.98490 5.11463 5.15000 5.19000 5.23760 5.26568 5.86564 5.92240 6.03294 6.30250 6.38408 6.67118 6.72722 7.07239 7.29661 8.21930 8.88330 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025788 B = 0.003582 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.518392 B = 7815.196737 C = 8351.078951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.045 3.955 3 C -0.222 4.222 4 C -0.133 4.133 5 C -0.091 4.091 6 C 0.592 3.408 7 O -0.581 6.581 8 N -0.708 5.708 9 C 0.124 3.876 10 C 0.106 3.894 11 O -0.535 6.535 12 C 0.130 3.870 13 N -0.653 5.653 14 C -0.289 4.289 15 H 0.048 0.952 16 C -0.088 4.088 17 N -0.972 5.972 18 Si 1.114 2.886 19 H -0.305 1.305 20 H -0.264 1.264 21 H -0.265 1.265 22 C 0.060 3.940 23 N -0.418 5.418 24 C 0.059 3.941 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.410 0.590 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.385 0.615 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.245 0.755 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.736 -1.947 -7.513 31.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.246 4.246 4 C -0.159 4.159 5 C -0.203 4.203 6 C 0.382 3.618 7 O -0.464 6.464 8 N -0.361 5.361 9 C -0.001 4.001 10 C 0.063 3.937 11 O -0.342 6.342 12 C 0.004 3.996 13 N -0.382 5.382 14 C -0.416 4.416 15 H 0.066 0.934 16 C -0.279 4.279 17 N -0.617 5.617 18 Si 0.940 3.060 19 H -0.233 1.233 20 H -0.190 1.190 21 H -0.191 1.191 22 C -0.065 4.065 23 N -0.092 5.092 24 C -0.082 4.082 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.180 0.820 29 H 0.180 0.820 30 H 0.248 0.752 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.235 0.765 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -30.561 -2.460 -6.415 31.324 hybrid contribution 1.247 -0.483 -1.051 1.700 sum -29.315 -2.944 -7.466 30.393 Atomic orbital electron populations 1.20524 0.85184 1.04725 1.03996 1.21253 0.95451 0.85350 1.05259 1.20994 0.92203 0.98988 1.12366 1.21723 0.99299 0.91492 1.03427 1.19916 0.84494 0.93993 1.21892 1.17150 0.82686 0.86532 0.75453 1.90743 1.86595 1.16105 1.52925 1.45426 1.04454 1.12560 1.73683 1.21709 0.81596 0.92879 1.03896 1.22695 0.93711 0.86704 0.90597 1.86645 1.43028 1.36778 1.67752 1.22637 0.89823 0.95058 0.92042 1.45854 1.01297 1.59427 1.31578 1.20004 0.82542 1.22713 1.16336 0.93363 1.27122 1.05197 0.96331 0.99207 1.71021 0.99108 1.49523 1.42063 0.83225 0.71456 0.76788 0.74541 1.23306 1.19032 1.19064 1.23859 0.84967 1.00799 0.96871 1.43993 1.04424 1.07531 1.53213 1.22377 1.02526 0.78964 1.04308 0.89499 0.90680 0.88316 0.82032 0.81960 0.75193 0.89468 0.89535 0.76456 0.93102 0.89957 0.94578 0.91410 0.92498 0.90148 0.87457 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.89 71.24 0.70 0.05 16 2 C 0.04 0.70 6.87 41.34 0.28 0.98 16 3 C -0.22 -3.59 10.71 22.01 0.24 -3.36 16 4 C -0.13 -2.43 10.35 22.57 0.23 -2.19 16 5 C -0.09 -2.02 6.89 40.35 0.28 -1.74 16 6 C 0.59 14.98 7.77 86.45 0.67 15.66 16 7 O -0.58 -17.85 14.56 -4.35 -0.06 -17.92 16 8 N -0.71 -15.51 5.32 -467.08 -2.48 -17.99 16 9 C 0.12 3.08 5.43 86.38 0.47 3.55 16 10 C 0.11 3.34 1.74 -10.37 -0.02 3.32 16 11 O -0.54 -16.89 13.56 -148.98 -2.02 -18.91 16 12 C 0.13 4.95 8.10 83.19 0.67 5.63 16 13 N -0.65 -32.15 3.69 -738.26 -2.73 -34.87 16 14 C -0.29 -17.37 11.09 84.03 0.93 -16.43 16 15 H 0.05 3.14 8.05 -2.91 -0.02 3.12 16 16 C -0.09 -5.38 5.50 84.86 0.47 -4.91 16 17 N -0.97 -64.41 13.70 21.65 0.30 -64.12 16 18 Si 1.11 54.13 25.12 68.60 1.72 55.85 16 19 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 20 H -0.26 -11.48 6.30 99.48 0.63 -10.85 16 21 H -0.27 -11.63 6.70 99.48 0.67 -10.96 16 22 C 0.06 2.33 5.36 83.27 0.45 2.78 16 23 N -0.42 -8.12 3.16 -519.71 -1.64 -9.76 16 24 C 0.06 0.91 10.27 127.77 1.31 2.23 16 25 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.07 0.44 7.77 -2.39 -0.02 0.42 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.16 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.16 2.17 7.48 -2.91 -0.02 2.15 16 30 H 0.41 7.13 5.89 -92.70 -0.55 6.59 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.19 7.89 -2.39 -0.02 2.17 16 33 H 0.39 8.11 7.20 -74.06 -0.53 7.58 16 34 H 0.05 1.99 8.14 -2.38 -0.02 1.98 16 35 H 0.08 2.72 8.10 -2.39 -0.02 2.70 16 36 H 0.25 16.36 8.73 -92.70 -0.81 15.55 16 37 H 0.07 2.47 7.85 -2.39 -0.02 2.45 16 38 H 0.06 2.28 4.03 -2.39 -0.01 2.27 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 0.99 7.84 -2.39 -0.02 0.97 16 41 H 0.09 1.79 5.97 -2.39 -0.01 1.78 16 Total: -1.00 -82.41 334.77 -0.40 -82.81 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.17 Total: 19.36 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.69 Total: 5.55 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -6.56 Total: -126.75 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -2.08 Total: -36.83 kcal Atomic # 14 Polarization: 54.13 SS G_CDS: 1.72 Total: 55.85 kcal Total: -82.41 -0.40 -82.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754763415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.309 kcal (2) G-P(sol) polarization free energy of solvation -82.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds