Wall clock time and date at job start Fri Apr 10 2020 17:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41260 * 126.70370 * 2 1 4 4 C 1.36823 * 103.84639 * 180.09539 * 3 2 1 5 5 C 1.47510 * 126.94506 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00049 * 359.70377 * 5 4 3 7 7 N 1.34774 * 120.00017 * 179.70619 * 5 4 3 8 8 C 1.47016 * 125.64922 * 359.96126 * 7 5 4 9 9 C 1.54375 * 107.29048 * 178.94216 * 8 7 5 10 10 C 1.55158 * 102.91753 * 337.85829 * 9 8 7 11 11 H 1.09002 * 111.00437 * 277.36144 * 10 9 8 12 12 C 1.53001 * 111.00472 * 153.54740 * 10 9 8 13 13 H 1.08999 * 109.46935 * 63.17849 * 12 10 9 14 14 C 1.52999 * 109.46944 * 303.18111 * 12 10 9 15 15 N 1.46499 * 109.47193 * 183.17908 * 12 10 9 16 16 C 1.36939 * 119.99933 * 205.27576 * 15 12 10 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 12 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 12 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.47425 * 125.64898 * 179.97438 * 7 5 4 25 25 O 1.34645 * 106.10925 * 359.66542 * 4 3 2 26 26 N 1.20886 * 111.46972 * 0.22379 * 25 4 3 27 27 H 1.08997 * 109.47420 * 270.26634 * 1 2 3 28 28 H 1.09005 * 109.47058 * 30.27019 * 1 2 3 29 29 H 1.08997 * 109.46597 * 150.26275 * 1 2 3 30 30 H 1.08004 * 128.08012 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.87912 * 298.38912 * 8 7 5 32 32 H 1.08995 * 109.88908 * 59.39884 * 8 7 5 33 33 H 1.09001 * 110.75395 * 219.49062 * 9 8 7 34 34 H 1.08993 * 110.70344 * 96.20153 * 9 8 7 35 35 H 1.08996 * 109.47098 * 60.00014 * 14 12 10 36 36 H 1.09001 * 109.46823 * 179.97438 * 14 12 10 37 37 H 1.08999 * 109.47091 * 299.99643 * 14 12 10 38 38 H 0.97001 * 119.99790 * 24.99549 * 15 12 10 39 39 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 40 40 H 1.08998 * 110.36780 * 85.25460 * 24 7 5 41 41 H 1.09005 * 110.45907 * 322.98134 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6011 -0.0022 5 6 4.8871 1.3430 -0.0037 6 8 4.8829 2.5588 -0.0084 7 7 6.0566 0.6732 0.0001 8 6 6.2063 -0.7893 0.0067 9 6 7.7192 -1.0957 -0.0180 10 6 8.3269 0.2047 -0.6070 11 1 8.2686 0.2051 -1.6955 12 6 9.7705 0.3969 -0.1380 13 1 10.3860 -0.4213 -0.5120 14 6 9.8125 0.4087 1.3914 15 7 10.2853 1.6691 -0.6506 16 6 11.6324 1.8421 -0.8251 17 1 12.3157 1.0422 -0.5807 18 6 12.1197 3.0455 -1.3163 19 7 11.2870 4.0204 -1.6137 20 14 13.9574 3.2817 -1.5537 21 1 14.4666 2.2699 -2.5140 22 1 14.2168 4.6438 -2.0853 23 1 14.6499 3.1195 -0.2500 24 6 7.3975 1.2857 -0.0013 25 8 3.4539 -0.7360 0.0042 26 7 2.2848 -1.0433 0.0054 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3632 -0.8923 -0.5097 30 1 2.0679 2.1747 -0.0004 31 1 5.7586 -1.2037 0.9100 32 1 5.7257 -1.2152 -0.8739 33 1 7.9302 -1.9474 -0.6647 34 1 8.0928 -1.2738 0.9903 35 1 9.4295 -0.5378 1.7727 36 1 10.8410 0.5452 1.7255 37 1 9.1970 1.2269 1.7654 38 1 9.6715 2.3874 -0.8701 39 1 11.6276 4.8614 -1.9566 40 1 7.7066 1.5245 1.0163 41 1 7.4059 2.1831 -0.6200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754787580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:47 Heat of formation + Delta-G solvation = 43.649618 kcal Electronic energy + Delta-G solvation = -23488.233823 eV Core-core repulsion = 19986.118830 eV Total energy + Delta-G solvation = -3502.114993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.22881 -40.10909 -38.03288 -35.39983 -34.99372 -32.76396 -32.08267 -30.56205 -29.07267 -28.76193 -27.81586 -25.21072 -23.95525 -23.30966 -22.37179 -21.74087 -19.72132 -18.87773 -18.04346 -17.91713 -17.14642 -16.43897 -16.26220 -15.63592 -14.77350 -14.59194 -14.12523 -13.86953 -13.73938 -13.62535 -13.47226 -13.33586 -13.22046 -12.95386 -12.73452 -12.24122 -12.09999 -11.68058 -11.60482 -11.12629 -10.96058 -10.84366 -10.60166 -10.40013 -10.37802 -10.31302 -10.25669 -9.94169 -9.89912 -9.62319 -8.91718 -8.64534 -6.97521 -5.75704 -3.05330 0.61559 1.77386 2.39234 2.89113 2.99376 3.44376 3.48875 3.50132 3.77885 4.09933 4.50931 4.60122 4.64696 4.77279 4.87655 4.99148 5.05144 5.09607 5.27574 5.32909 5.39474 5.50561 5.58792 5.62465 5.72122 5.75170 5.77420 5.92921 6.02863 6.12434 6.14658 6.21977 6.39838 6.52013 6.67009 6.81399 7.08767 7.31248 7.69810 7.72307 7.94210 8.42343 9.53457 10.10067 10.44315 11.46639 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.003101 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.986060 B = 9028.396268 C = 9585.760548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.009 3.991 3 C -0.157 4.157 4 C -0.070 4.070 5 C 0.611 3.389 6 O -0.510 6.510 7 N -0.601 5.601 8 C 0.097 3.903 9 C -0.130 4.130 10 C -0.103 4.103 11 H 0.086 0.914 12 C 0.185 3.815 13 H 0.054 0.946 14 C -0.172 4.172 15 N -0.725 5.725 16 C -0.241 4.241 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.108 3.892 25 O 0.118 5.882 26 N -0.351 5.351 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.183 0.817 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.854 -11.300 4.407 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.179 4.179 4 C -0.136 4.136 5 C 0.396 3.604 6 O -0.386 6.386 7 N -0.334 5.334 8 C -0.026 4.026 9 C -0.168 4.168 10 C -0.123 4.123 11 H 0.105 0.895 12 C 0.074 3.926 13 H 0.072 0.928 14 C -0.232 4.232 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.088 0.912 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.013 4.013 25 O 0.046 5.954 26 N -0.053 5.053 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.960 -11.901 4.383 22.811 hybrid contribution 0.716 1.233 -0.208 1.441 sum -18.244 -10.668 4.175 21.543 Atomic orbital electron populations 1.20203 0.85286 1.04117 1.03662 1.23649 0.99366 0.88357 1.03462 1.22864 0.89916 1.01781 1.03367 1.24294 0.97327 0.83828 1.08136 1.16122 0.80216 0.85727 0.78331 1.90910 1.85487 1.11508 1.50723 1.48455 1.05961 1.08275 1.70680 1.22216 0.98442 0.79749 1.02189 1.22839 0.92351 0.98563 1.03021 1.22728 0.95947 0.92881 1.00704 0.89540 1.20078 0.89811 0.90800 0.91880 0.92846 1.22629 1.01784 0.99446 0.99366 1.42436 1.05176 1.11628 1.77395 1.19174 0.83575 0.98255 1.36174 0.91202 1.24747 0.97592 0.96491 1.02042 1.69653 1.33097 1.04895 1.50311 0.86286 0.85337 0.76842 0.77799 1.21305 1.21745 1.21312 1.22615 0.78459 0.97482 1.02720 1.85038 1.21213 1.22265 1.66929 1.73722 0.89437 1.24438 1.17691 0.89906 0.89672 0.90298 0.79920 0.90974 0.90937 0.89788 0.89519 0.94035 0.92657 0.93107 0.78183 0.93417 0.89795 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.47 36.01 0.38 -0.08 16 2 C 0.01 0.09 7.31 -82.16 -0.60 -0.51 16 3 C -0.16 -1.71 10.91 -38.95 -0.43 -2.13 16 4 C -0.07 -0.89 7.08 -36.32 -0.26 -1.14 16 5 C 0.61 9.22 7.85 -12.48 -0.10 9.12 16 6 O -0.51 -9.34 17.17 5.29 0.09 -9.25 16 7 N -0.60 -8.47 3.33 -171.74 -0.57 -9.04 16 8 C 0.10 1.07 5.58 -3.04 -0.02 1.05 16 9 C -0.13 -1.44 6.31 -24.87 -0.16 -1.59 16 10 C -0.10 -1.54 3.07 -88.48 -0.27 -1.81 16 11 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.18 3.35 2.84 -67.93 -0.19 3.16 16 13 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 14 C -0.17 -2.85 8.85 37.16 0.33 -2.52 16 15 N -0.72 -17.35 5.07 -53.43 -0.27 -17.62 16 16 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.11 1.71 5.68 -2.54 -0.01 1.70 16 25 O 0.12 1.42 9.02 15.54 0.14 1.56 16 26 N -0.35 -4.19 12.04 33.52 0.40 -3.78 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 32 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.91 5.74 -51.93 -0.30 0.61 16 35 H 0.04 0.55 6.07 -51.93 -0.32 0.23 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.86 6.04 -51.93 -0.31 0.55 16 38 H 0.38 9.87 7.06 -40.82 -0.29 9.58 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.36 5.66 -51.93 -0.29 1.07 16 41 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.02 337.01 -6.65 -38.67 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.65 Total: 6.31 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.57 Total: -1.84 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.29 Total: -57.70 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.23 Total: -7.68 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.02 -6.65 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754787580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.319 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds