Wall clock time and date at job start Fri Apr 10 2020 17:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41260 * 126.70370 * 2 1 4 4 C 1.36823 * 103.84639 * 180.09539 * 3 2 1 5 5 C 1.47510 * 126.94506 * 179.97438 * 4 3 2 6 6 O 1.21584 * 120.00049 * 359.70377 * 5 4 3 7 7 N 1.34774 * 120.00017 * 179.70619 * 5 4 3 8 8 C 1.47016 * 125.64922 * 359.96126 * 7 5 4 9 9 C 1.54375 * 107.29048 * 178.94216 * 8 7 5 10 10 C 1.55158 * 102.91753 * 337.85829 * 9 8 7 11 11 H 1.09002 * 111.00437 * 277.36144 * 10 9 8 12 12 C 1.53001 * 111.00472 * 153.54740 * 10 9 8 13 13 H 1.08999 * 109.46935 * 63.17849 * 12 10 9 14 14 C 1.52999 * 109.46944 * 303.18111 * 12 10 9 15 15 N 1.46499 * 109.47193 * 183.17908 * 12 10 9 16 16 C 1.36939 * 119.99933 * 205.27576 * 15 12 10 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 12 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 12 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.47425 * 125.64898 * 179.97438 * 7 5 4 25 25 O 1.34645 * 106.10925 * 359.66542 * 4 3 2 26 26 N 1.20886 * 111.46972 * 0.22379 * 25 4 3 27 27 H 1.08997 * 109.47420 * 270.26634 * 1 2 3 28 28 H 1.09005 * 109.47058 * 30.27019 * 1 2 3 29 29 H 1.08997 * 109.46597 * 150.26275 * 1 2 3 30 30 H 1.08004 * 128.08012 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.87912 * 298.38912 * 8 7 5 32 32 H 1.08995 * 109.88908 * 59.39884 * 8 7 5 33 33 H 1.09001 * 110.75395 * 219.49062 * 9 8 7 34 34 H 1.08993 * 110.70344 * 96.20153 * 9 8 7 35 35 H 1.08996 * 109.47098 * 60.00014 * 14 12 10 36 36 H 1.09001 * 109.46823 * 179.97438 * 14 12 10 37 37 H 1.08999 * 109.47091 * 299.99643 * 14 12 10 38 38 H 0.97001 * 119.99790 * 24.99549 * 15 12 10 39 39 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 40 40 H 1.08998 * 110.36780 * 85.25460 * 24 7 5 41 41 H 1.09005 * 110.45907 * 322.98134 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6121 0.6011 -0.0022 5 6 4.8871 1.3430 -0.0037 6 8 4.8829 2.5588 -0.0084 7 7 6.0566 0.6732 0.0001 8 6 6.2063 -0.7893 0.0067 9 6 7.7192 -1.0957 -0.0180 10 6 8.3269 0.2047 -0.6070 11 1 8.2686 0.2051 -1.6955 12 6 9.7705 0.3969 -0.1380 13 1 10.3860 -0.4213 -0.5120 14 6 9.8125 0.4087 1.3914 15 7 10.2853 1.6691 -0.6506 16 6 11.6324 1.8421 -0.8251 17 1 12.3157 1.0422 -0.5807 18 6 12.1197 3.0455 -1.3163 19 7 11.2870 4.0204 -1.6137 20 14 13.9574 3.2817 -1.5537 21 1 14.4666 2.2699 -2.5140 22 1 14.2168 4.6438 -2.0853 23 1 14.6499 3.1195 -0.2500 24 6 7.3975 1.2857 -0.0013 25 8 3.4539 -0.7360 0.0042 26 7 2.2848 -1.0433 0.0054 27 1 -0.3634 0.0048 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3632 -0.8923 -0.5097 30 1 2.0679 2.1747 -0.0004 31 1 5.7586 -1.2037 0.9100 32 1 5.7257 -1.2152 -0.8739 33 1 7.9302 -1.9474 -0.6647 34 1 8.0928 -1.2738 0.9903 35 1 9.4295 -0.5378 1.7727 36 1 10.8410 0.5452 1.7255 37 1 9.1970 1.2269 1.7654 38 1 9.6715 2.3874 -0.8701 39 1 11.6276 4.8614 -1.9566 40 1 7.7066 1.5245 1.0163 41 1 7.4059 2.1831 -0.6200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754787580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:47 Heat of formation + Delta-G solvation = 22.371007 kcal Electronic energy + Delta-G solvation = -23489.156533 eV Core-core repulsion = 19986.118830 eV Total energy + Delta-G solvation = -3503.037703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.09142 -41.29359 -39.31088 -36.83615 -35.90855 -34.39790 -33.21851 -31.97107 -30.24851 -29.65028 -29.16903 -26.50517 -25.70452 -24.22270 -23.53620 -22.92048 -20.70398 -20.25981 -19.31765 -18.94282 -18.65674 -17.57641 -17.44019 -16.78493 -16.52048 -15.87272 -15.44630 -15.18582 -14.86386 -14.82409 -14.39016 -14.23847 -14.20122 -14.03686 -13.66611 -13.57966 -13.50888 -13.08791 -12.73047 -12.66349 -12.43258 -12.26428 -12.17194 -12.12105 -11.63460 -11.59574 -11.40330 -11.38058 -11.15387 -10.88467 -10.87325 -9.81249 -8.97727 -7.90126 -5.18333 -0.36118 0.96313 1.34304 1.48779 1.51471 1.57398 1.77733 1.97724 2.58901 3.04792 3.20310 3.43389 3.54233 3.59969 3.79674 3.92300 3.93825 4.15833 4.27689 4.32192 4.39138 4.47727 4.61035 4.66992 4.69210 4.71825 4.79039 4.81635 4.92559 4.95125 5.04753 5.10708 5.18684 5.22349 5.33081 5.41940 5.57167 5.70512 6.19386 6.31990 6.64128 6.98464 7.37766 8.15781 8.36535 9.33338 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.003101 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.986060 B = 9028.396268 C = 9585.760548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.017 3.983 3 C -0.150 4.150 4 C -0.086 4.086 5 C 0.609 3.391 6 O -0.555 6.555 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.115 4.115 10 C -0.095 4.095 11 H 0.074 0.926 12 C 0.179 3.821 13 H 0.058 0.942 14 C -0.163 4.163 15 N -0.740 5.740 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.301 1.301 23 H -0.279 1.279 24 C 0.113 3.887 25 O 0.114 5.886 26 N -0.366 5.366 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.198 0.802 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.371 0.629 39 H 0.248 0.752 40 H 0.080 0.920 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 -13.880 5.154 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.141 4.141 3 C -0.172 4.172 4 C -0.151 4.151 5 C 0.396 3.604 6 O -0.434 6.434 7 N -0.332 5.332 8 C -0.026 4.026 9 C -0.153 4.153 10 C -0.115 4.115 11 H 0.092 0.908 12 C 0.071 3.929 13 H 0.076 0.924 14 C -0.222 4.222 15 N -0.380 5.380 16 C -0.365 4.365 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.800 3.200 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.205 1.205 24 C -0.009 4.009 25 O 0.044 5.956 26 N -0.070 5.070 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.215 0.785 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.202 0.798 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.129 -14.579 5.155 25.383 hybrid contribution 0.973 1.949 -0.410 2.217 sum -19.156 -12.630 4.745 23.430 Atomic orbital electron populations 1.20423 0.82420 1.05435 1.05066 1.24233 1.00989 0.87274 1.01579 1.23203 0.89441 1.02845 1.01713 1.23904 0.96628 0.84465 1.10149 1.16399 0.81089 0.85435 0.77525 1.90878 1.86293 1.13409 1.52820 1.48507 1.05018 1.09644 1.69983 1.22448 0.98730 0.77635 1.03837 1.22850 0.91612 0.96859 1.03949 1.22522 0.93907 0.95051 1.00035 0.90776 1.20336 0.91500 0.88225 0.92859 0.92419 1.22482 1.00681 1.01413 0.97637 1.42703 1.04171 1.13410 1.77713 1.19612 0.85133 0.98012 1.33770 0.90279 1.25546 1.01672 0.96689 1.03315 1.69829 1.34804 1.05228 1.52542 0.85254 0.80620 0.76218 0.77936 1.20305 1.22742 1.20481 1.22388 0.80065 0.96763 1.01685 1.85022 1.21513 1.21590 1.67490 1.73710 0.89561 1.25153 1.18548 0.88330 0.87702 0.89650 0.78511 0.88937 0.89720 0.87163 0.88141 0.89850 0.94562 0.93981 0.79760 0.94289 0.90234 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 71.24 0.75 0.05 16 2 C 0.02 0.30 7.31 43.56 0.32 0.62 16 3 C -0.15 -3.05 10.91 22.68 0.25 -2.80 16 4 C -0.09 -2.10 7.08 24.38 0.17 -1.93 16 5 C 0.61 18.59 7.85 86.69 0.68 19.27 16 6 O -0.55 -21.15 17.17 -3.98 -0.07 -21.22 16 7 N -0.60 -16.74 3.33 -815.54 -2.71 -19.45 16 8 C 0.09 1.87 5.58 86.75 0.48 2.35 16 9 C -0.11 -2.18 6.31 31.80 0.20 -1.98 16 10 C -0.10 -2.78 3.07 -9.41 -0.03 -2.81 16 11 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 12 C 0.18 6.37 2.84 44.99 0.13 6.50 16 13 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 14 C -0.16 -5.14 8.85 71.98 0.64 -4.50 16 15 N -0.74 -36.12 5.07 -322.94 -1.64 -37.76 16 16 C -0.23 -12.68 9.93 84.03 0.83 -11.84 16 17 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 19 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 20 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.11 3.67 5.68 86.85 0.49 4.17 16 25 O 0.11 2.58 9.02 65.80 0.59 3.17 16 26 N -0.37 -8.01 12.04 -48.87 -0.59 -8.60 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.20 3.31 8.06 -2.91 -0.02 3.28 16 31 H 0.09 1.52 7.83 -2.39 -0.02 1.50 16 32 H 0.08 1.51 7.72 -2.39 -0.02 1.49 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.10 1.67 5.74 -2.39 -0.01 1.65 16 35 H 0.08 1.93 6.07 -2.39 -0.01 1.91 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.40 6.04 -2.39 -0.01 1.38 16 38 H 0.37 19.93 7.06 -92.71 -0.65 19.27 16 39 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.08 2.65 5.66 -2.39 -0.01 2.63 16 41 H 0.05 1.99 7.79 -2.38 -0.02 1.97 16 Total: -1.00 -71.88 337.01 3.68 -68.20 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.40 Total: 24.61 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.38 Total: 2.95 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -4.66 Total: -126.00 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.53 Total: -18.05 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -71.88 3.68 -68.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754787580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.576 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds