Wall clock time and date at job start Fri Apr 10 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00219 * 2 1 3 5 5 C 1.36939 * 119.99999 * 275.00246 * 4 2 1 6 6 H 1.08001 * 120.00034 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00220 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99780 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46747 * 90.00258 * 9 7 5 11 11 H 1.48503 * 109.46957 * 210.00109 * 9 7 5 12 12 H 1.48492 * 109.47267 * 330.00368 * 9 7 5 13 13 C 1.53002 * 109.47025 * 240.00129 * 2 1 3 14 14 H 1.09000 * 110.88398 * 296.12048 * 13 2 1 15 15 C 1.55552 * 110.99828 * 172.21286 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34775 * 125.65103 * 180.94532 * 17 16 15 19 19 O 1.21283 * 120.00490 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99715 * 0.02633 * 18 17 16 21 21 C 1.50702 * 109.47328 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.80581 * 124.70951 * 21 20 18 23 23 C 1.35448 * 103.98419 * 179.89061 * 22 21 20 24 24 O 1.34042 * 106.44783 * 0.36666 * 23 22 21 25 25 N 1.20915 * 111.56811 * 359.75292 * 24 23 22 26 26 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 27 27 H 1.08997 * 109.47278 * 59.99576 * 1 2 3 28 28 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46682 * 299.99732 * 1 2 3 30 30 H 0.96995 * 120.00417 * 94.99679 * 4 2 1 31 31 H 0.97005 * 120.00291 * 180.02562 * 8 7 5 32 32 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 33 33 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 34 34 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 35 35 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 36 36 H 1.09003 * 109.47454 * 300.00129 * 20 18 17 37 37 H 1.09003 * 109.47508 * 59.99708 * 20 18 17 38 38 H 1.08001 * 128.00585 * 0.02562 * 22 21 20 39 39 H 1.07998 * 126.77389 * 180.09798 * 23 22 21 40 40 H 1.08997 * 110.36526 * 94.70985 * 26 17 16 41 41 H 1.08995 * 110.36492 * 217.03407 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6124 -0.6618 3.5090 8 7 2.7385 -0.0052 4.6426 9 14 3.0567 -2.4743 3.4250 10 1 4.4893 -2.6162 3.0606 11 1 2.8178 -3.1043 4.7483 12 1 2.2165 -3.1429 2.3994 13 6 2.0400 -0.7212 -1.2493 14 1 1.7468 -1.7710 -1.2388 15 6 3.5823 -0.5738 -1.3874 16 6 3.8030 -0.7124 -2.9085 17 7 2.5326 -0.3795 -3.5693 18 6 2.3095 -0.3997 -4.8984 19 8 1.2171 -0.1043 -5.3345 20 6 3.4176 -0.7895 -5.8425 21 6 2.9125 -0.7314 -7.2611 22 6 3.4719 0.0061 -8.3298 23 6 2.6636 -0.2748 -9.3798 24 8 1.7171 -1.1045 -8.9188 25 7 1.8714 -1.3458 -7.7440 26 6 1.5433 -0.0188 -2.5375 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.2491 -1.6318 1.1526 31 1 3.0626 -0.4623 5.4345 32 1 4.0975 -1.3691 -0.8489 33 1 3.9100 0.4052 -1.0379 34 1 4.0892 -1.7362 -3.1498 35 1 4.5821 -0.0233 -3.2344 36 1 4.2535 -0.0996 -5.7262 37 1 3.7487 -1.8029 -5.6155 38 1 4.3434 0.6439 -8.3134 39 1 2.7599 0.0997 -10.3882 40 1 1.5199 1.0616 -2.3956 41 1 0.5555 -0.3875 -2.8138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754789742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:51 Heat of formation + Delta-G solvation = 42.746519 kcal Electronic energy + Delta-G solvation = -23159.755200 eV Core-core repulsion = 19657.601046 eV Total energy + Delta-G solvation = -3502.154154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.15857 -40.16266 -37.99360 -35.40767 -34.84065 -32.52310 -31.97487 -30.96743 -29.86269 -29.42321 -27.46340 -24.60517 -23.40175 -23.03006 -21.74329 -21.32232 -19.87625 -19.31638 -17.98529 -17.89777 -17.60536 -16.99243 -16.31669 -15.82679 -15.06606 -14.73166 -14.44678 -13.87264 -13.75157 -13.64399 -13.34789 -13.07630 -12.85388 -12.71140 -12.61301 -12.43754 -12.18614 -11.92110 -11.60411 -11.49353 -11.01379 -10.85911 -10.62568 -10.51873 -10.46227 -10.27696 -10.01117 -9.90284 -9.82224 -9.60771 -8.96522 -8.70182 -7.30488 -5.79345 -3.14972 1.30191 1.93427 2.51108 2.88593 3.05986 3.34183 3.37033 3.43008 3.83010 4.17716 4.40526 4.56221 4.64958 4.75489 4.83999 4.87403 4.94676 5.01116 5.15854 5.19891 5.36323 5.40829 5.44492 5.56024 5.61904 5.70697 5.78807 5.84056 5.92679 6.08948 6.11546 6.19958 6.33436 6.39403 6.47884 6.77104 6.99331 7.41755 7.96722 8.04877 8.08062 8.39575 9.17970 9.90422 10.10226 11.39035 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.002842 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.278640 B = 9849.030647 C =10120.726022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.119 4.119 16 C 0.096 3.904 17 N -0.618 5.618 18 C 0.529 3.471 19 O -0.530 6.530 20 C -0.058 4.058 21 C 0.023 3.977 22 C -0.229 4.229 23 C -0.065 4.065 24 O 0.105 5.895 25 N -0.336 5.336 26 C 0.116 3.884 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.360 0.640 31 H 0.259 0.741 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.172 0.828 39 H 0.216 0.784 40 H 0.071 0.929 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -0.951 -26.386 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.027 4.027 17 N -0.352 5.352 18 C 0.316 3.684 19 O -0.406 6.406 20 C -0.098 4.098 21 C -0.137 4.137 22 C -0.250 4.250 23 C -0.146 4.146 24 O 0.035 5.965 25 N -0.036 5.036 26 C -0.006 4.006 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.189 0.811 39 H 0.232 0.768 40 H 0.090 0.910 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.696 -1.442 -25.975 26.276 hybrid contribution 1.162 -0.721 0.018 1.368 sum 4.858 -2.163 -25.957 26.496 Atomic orbital electron populations 1.22472 0.98749 1.01025 1.00650 1.20097 0.91980 0.95429 0.84391 0.92347 1.42743 1.79856 1.09301 1.07014 1.19049 1.36796 0.95505 0.85683 0.89215 1.24661 1.01533 0.97390 0.95561 1.69695 1.52642 1.35574 1.00295 0.86571 0.78350 0.86875 0.76842 1.21123 1.21838 1.20356 1.22784 0.94978 1.00540 0.94393 0.90145 1.22686 0.96512 1.04116 0.92386 1.22191 0.85792 1.00333 0.94409 1.48535 1.13983 1.67688 1.05022 1.19896 0.89222 0.78059 0.81257 1.90755 1.25305 1.48398 1.76140 1.19965 0.97844 1.05129 0.86894 1.22901 0.94309 0.98956 0.97531 1.22690 1.04691 1.05674 0.91947 1.26002 0.90459 0.96483 1.01663 1.84883 1.43333 1.49553 1.18741 1.73911 1.17333 1.20441 0.91954 1.22292 0.92522 0.99797 0.86031 0.94020 0.93556 0.92214 0.80715 0.93074 0.89738 0.89782 0.91514 0.91337 0.86671 0.87029 0.81073 0.76766 0.91049 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.27 37.16 0.34 -2.55 16 2 C 0.19 3.40 2.43 -67.93 -0.16 3.23 16 3 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 4 N -0.75 -16.55 4.78 -53.42 -0.26 -16.81 16 5 C -0.24 -6.50 10.41 -15.06 -0.16 -6.65 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 9 Si 0.88 21.49 27.74 -169.99 -4.71 16.78 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 13 C -0.11 -1.54 2.66 -88.25 -0.23 -1.77 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 15 C -0.12 -1.50 6.31 -24.68 -0.16 -1.65 16 16 C 0.10 0.95 6.47 -3.07 -0.02 0.93 16 17 N -0.62 -7.75 3.33 -170.52 -0.57 -8.31 16 18 C 0.53 7.17 7.84 -10.99 -0.09 7.08 16 19 O -0.53 -9.48 15.85 5.55 0.09 -9.39 16 20 C -0.06 -0.55 5.49 -29.03 -0.16 -0.71 16 21 C 0.02 0.25 6.10 -82.10 -0.50 -0.25 16 22 C -0.23 -1.77 11.12 -39.38 -0.44 -2.21 16 23 C -0.06 -0.45 12.30 29.74 0.37 -0.08 16 24 O 0.10 1.14 11.20 17.17 0.19 1.34 16 25 N -0.34 -4.54 11.46 33.42 0.38 -4.15 16 26 C 0.12 1.59 5.27 -2.53 -0.01 1.58 16 27 H 0.04 0.61 7.23 -51.93 -0.38 0.24 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.11 8.00 -51.93 -0.42 0.70 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.22 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 41 H 0.08 1.15 7.94 -51.93 -0.41 0.74 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -35.47 342.73 -6.34 -41.81 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.09 Total: 4.62 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.32 Total: -3.02 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.34 Total: -57.29 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.28 Total: -8.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.47 -6.34 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.555 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds