Wall clock time and date at job start Fri Apr 10 2020 17:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00219 * 2 1 3 5 5 C 1.36939 * 119.99999 * 275.00246 * 4 2 1 6 6 H 1.08001 * 120.00034 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00220 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99780 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46747 * 90.00258 * 9 7 5 11 11 H 1.48503 * 109.46957 * 210.00109 * 9 7 5 12 12 H 1.48492 * 109.47267 * 330.00368 * 9 7 5 13 13 C 1.53002 * 109.47025 * 240.00129 * 2 1 3 14 14 H 1.09000 * 110.88398 * 296.12048 * 13 2 1 15 15 C 1.55552 * 110.99828 * 172.21286 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34775 * 125.65103 * 180.94532 * 17 16 15 19 19 O 1.21283 * 120.00490 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.99715 * 0.02633 * 18 17 16 21 21 C 1.50702 * 109.47328 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.80581 * 124.70951 * 21 20 18 23 23 C 1.35448 * 103.98419 * 179.89061 * 22 21 20 24 24 O 1.34042 * 106.44783 * 0.36666 * 23 22 21 25 25 N 1.20915 * 111.56811 * 359.75292 * 24 23 22 26 26 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 27 27 H 1.08997 * 109.47278 * 59.99576 * 1 2 3 28 28 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46682 * 299.99732 * 1 2 3 30 30 H 0.96995 * 120.00417 * 94.99679 * 4 2 1 31 31 H 0.97005 * 120.00291 * 180.02562 * 8 7 5 32 32 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 33 33 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 34 34 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 35 35 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 36 36 H 1.09003 * 109.47454 * 300.00129 * 20 18 17 37 37 H 1.09003 * 109.47508 * 59.99708 * 20 18 17 38 38 H 1.08001 * 128.00585 * 0.02562 * 22 21 20 39 39 H 1.07998 * 126.77389 * 180.09798 * 23 22 21 40 40 H 1.08997 * 110.36526 * 94.70985 * 26 17 16 41 41 H 1.08995 * 110.36492 * 217.03407 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6124 -0.6618 3.5090 8 7 2.7385 -0.0052 4.6426 9 14 3.0567 -2.4743 3.4250 10 1 4.4893 -2.6162 3.0606 11 1 2.8178 -3.1043 4.7483 12 1 2.2165 -3.1429 2.3994 13 6 2.0400 -0.7212 -1.2493 14 1 1.7468 -1.7710 -1.2388 15 6 3.5823 -0.5738 -1.3874 16 6 3.8030 -0.7124 -2.9085 17 7 2.5326 -0.3795 -3.5693 18 6 2.3095 -0.3997 -4.8984 19 8 1.2171 -0.1043 -5.3345 20 6 3.4176 -0.7895 -5.8425 21 6 2.9125 -0.7314 -7.2611 22 6 3.4719 0.0061 -8.3298 23 6 2.6636 -0.2748 -9.3798 24 8 1.7171 -1.1045 -8.9188 25 7 1.8714 -1.3458 -7.7440 26 6 1.5433 -0.0188 -2.5375 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 2.2491 -1.6318 1.1526 31 1 3.0626 -0.4623 5.4345 32 1 4.0975 -1.3691 -0.8489 33 1 3.9100 0.4052 -1.0379 34 1 4.0892 -1.7362 -3.1498 35 1 4.5821 -0.0233 -3.2344 36 1 4.2535 -0.0996 -5.7262 37 1 3.7487 -1.8029 -5.6155 38 1 4.3434 0.6439 -8.3134 39 1 2.7599 0.0997 -10.3882 40 1 1.5199 1.0616 -2.3956 41 1 0.5555 -0.3875 -2.8138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754789742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:51 Heat of formation + Delta-G solvation = 17.720258 kcal Electronic energy + Delta-G solvation = -23160.840420 eV Core-core repulsion = 19657.601046 eV Total energy + Delta-G solvation = -3503.239374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.85389 -41.19411 -39.17932 -36.92450 -35.56895 -34.30549 -32.65976 -32.35700 -31.12399 -30.49736 -28.63861 -26.13668 -24.49962 -24.01295 -22.74345 -22.39136 -21.32271 -20.20512 -19.54543 -18.68501 -18.61322 -17.94624 -17.48421 -16.76986 -16.47717 -15.94241 -15.51938 -15.20287 -15.08533 -14.68415 -14.35495 -14.21064 -14.04790 -13.85791 -13.79731 -13.52349 -13.48280 -13.20541 -12.96610 -12.84118 -12.39067 -12.19915 -12.02503 -11.90513 -11.72324 -11.68105 -11.41811 -11.24504 -10.95663 -10.83577 -10.50130 -9.69766 -9.29674 -7.98341 -5.31355 0.71206 1.27667 1.40317 1.43899 1.51074 1.54131 1.98205 2.51822 2.55645 3.18104 3.31467 3.33441 3.56678 3.65144 3.75576 3.84316 4.07617 4.22770 4.30556 4.34634 4.41175 4.45342 4.47935 4.54817 4.61864 4.67909 4.76044 4.87126 4.88215 4.93084 5.02182 5.13770 5.17534 5.21673 5.30792 5.35175 5.54481 5.81541 6.25304 6.46620 7.06801 7.12046 7.44550 7.87674 8.07649 9.23389 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038490 B = 0.002842 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.278640 B = 9849.030647 C =10120.726022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.049 0.951 4 N -0.745 5.745 5 C -0.221 4.221 6 H 0.055 0.945 7 C -0.066 4.066 8 N -0.987 5.987 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.303 1.303 12 H -0.253 1.253 13 C -0.098 4.098 14 H 0.083 0.917 15 C -0.119 4.119 16 C 0.100 3.900 17 N -0.617 5.617 18 C 0.523 3.477 19 O -0.583 6.583 20 C -0.051 4.051 21 C 0.002 3.998 22 C -0.233 4.233 23 C -0.054 4.054 24 O 0.084 5.916 25 N -0.390 5.390 26 C 0.120 3.880 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.365 0.635 31 H 0.256 0.744 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.131 0.869 38 H 0.205 0.795 39 H 0.261 0.739 40 H 0.069 0.931 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -2.016 -29.128 30.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.079 3.921 3 H 0.067 0.933 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.073 0.927 7 C -0.257 4.257 8 N -0.638 5.638 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.231 1.231 12 H -0.178 1.178 13 C -0.118 4.118 14 H 0.101 0.899 15 C -0.157 4.157 16 C -0.022 4.022 17 N -0.350 5.350 18 C 0.312 3.688 19 O -0.463 6.463 20 C -0.091 4.091 21 C -0.157 4.157 22 C -0.254 4.254 23 C -0.135 4.135 24 O 0.017 5.983 25 N -0.094 5.094 26 C -0.003 4.003 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.199 0.801 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.222 0.778 39 H 0.277 0.723 40 H 0.087 0.913 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.770 -2.515 -28.785 29.465 hybrid contribution 0.472 -0.246 0.802 0.962 sum 6.242 -2.761 -27.983 28.804 Atomic orbital electron populations 1.22367 0.98148 1.01156 1.00569 1.20249 0.92268 0.95128 0.84478 0.93306 1.42694 1.79962 1.09463 1.06762 1.18973 1.34608 0.94269 0.87385 0.92708 1.25474 1.02637 1.02459 0.95154 1.69887 1.54930 1.37736 1.01234 0.85423 0.78852 0.80813 0.76741 1.19849 1.23056 1.17810 1.22564 0.96639 0.99976 0.92600 0.89905 1.22680 0.94638 1.03738 0.94670 1.22335 0.85111 1.02727 0.91989 1.48599 1.14509 1.67141 1.04768 1.20655 0.89544 0.76972 0.81621 1.90732 1.27696 1.50844 1.77007 1.20101 0.96979 1.07061 0.84957 1.23441 0.94180 0.99140 0.98904 1.23139 1.05747 1.05661 0.90890 1.26943 0.88642 0.94520 1.03400 1.84810 1.44636 1.50652 1.18186 1.73907 1.19384 1.22890 0.93218 1.22104 0.92498 0.99522 0.86219 0.91620 0.93284 0.94763 0.80129 0.93526 0.89486 0.90693 0.89035 0.88297 0.82902 0.85150 0.77848 0.72291 0.91254 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.54 9.27 71.98 0.67 -4.88 16 2 C 0.19 6.57 2.43 44.99 0.11 6.68 16 3 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 4 N -0.75 -32.53 4.78 -322.94 -1.54 -34.07 16 5 C -0.22 -12.14 10.41 84.03 0.87 -11.26 16 6 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 7 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 8 N -0.99 -62.52 13.97 21.65 0.30 -62.22 16 9 Si 0.95 44.15 27.74 68.60 1.90 46.06 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 13 C -0.10 -2.65 2.66 -9.26 -0.02 -2.67 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.12 -2.68 6.31 31.92 0.20 -2.48 16 16 C 0.10 1.60 6.47 86.73 0.56 2.16 16 17 N -0.62 -13.99 3.33 -811.79 -2.70 -16.69 16 18 C 0.52 13.26 7.84 87.66 0.69 13.94 16 19 O -0.58 -20.84 15.85 -3.04 -0.05 -20.89 16 20 C -0.05 -0.81 5.49 29.10 0.16 -0.65 16 21 C 0.00 0.04 6.10 43.58 0.27 0.31 16 22 C -0.23 -2.91 11.12 22.40 0.25 -2.66 16 23 C -0.05 -0.61 12.30 67.17 0.83 0.21 16 24 O 0.08 1.79 11.20 71.62 0.80 2.59 16 25 N -0.39 -10.42 11.46 -49.55 -0.57 -10.98 16 26 C 0.12 3.15 5.27 86.85 0.46 3.61 16 27 H 0.06 1.90 7.23 -2.39 -0.02 1.89 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.37 15.25 5.66 -92.71 -0.52 14.72 16 31 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.26 0.00 8.06 -2.91 -0.02 -0.02 16 40 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 41 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 Total: -1.00 -81.70 342.73 4.10 -77.60 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.45 Total: 19.65 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.50 Total: -1.04 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -4.51 Total: -123.96 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.75 Total: -18.30 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.06 kcal Total: -81.70 4.10 -77.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.320 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds