Wall clock time and date at job start Fri Apr 10 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38228 * 120.41563 * 2 1 4 4 N 1.31862 * 120.76021 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72328 * 359.69846 * 4 3 2 6 6 C 1.38181 * 120.76757 * 0.58552 * 5 4 3 7 7 C 1.50690 * 120.42060 * 179.70360 * 6 5 4 8 8 C 1.50703 * 109.47154 * 269.72643 * 7 6 5 9 9 O 1.21273 * 120.00280 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00160 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00398 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47346 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47177 * 65.00353 * 12 11 10 14 14 C 1.53006 * 109.47133 * 185.00123 * 12 11 10 15 15 O 1.42903 * 109.47139 * 55.00254 * 14 12 11 16 16 N 1.46493 * 109.47542 * 305.00099 * 12 11 10 17 17 C 1.36936 * 120.00314 * 154.99721 * 16 12 11 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 12 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 12 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.38625 * 120.41918 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47435 * 269.98056 * 1 2 3 27 27 H 1.09000 * 109.47043 * 29.98417 * 1 2 3 28 28 H 1.09000 * 109.46798 * 149.98509 * 1 2 3 29 29 H 1.08000 * 119.62106 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.61566 * 180.31608 * 5 4 3 31 31 H 1.08997 * 109.47830 * 149.72256 * 7 6 5 32 32 H 1.09008 * 109.47035 * 29.72310 * 7 6 5 33 33 H 0.96998 * 119.99643 * 359.97438 * 10 8 7 34 34 H 1.09009 * 109.46774 * 60.00205 * 11 10 8 35 35 H 1.09002 * 109.47338 * 300.00832 * 11 10 8 36 36 H 1.08997 * 109.47285 * 175.00337 * 14 12 11 37 37 H 1.09002 * 109.47155 * 295.00382 * 14 12 11 38 38 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 39 39 H 0.97000 * 120.00040 * 334.99853 * 16 12 11 40 40 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 41 41 H 1.07996 * 120.79271 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.2000 -0.0005 5 6 4.2257 0.0824 0.0049 6 6 3.5949 -1.1471 -0.0008 7 6 4.4027 -2.4191 -0.0014 8 6 4.6715 -2.8429 -1.4224 9 8 4.2484 -2.1778 -2.3439 10 7 5.3822 -3.9612 -1.6691 11 6 5.6431 -4.3735 -3.0504 12 6 6.4634 -5.6650 -3.0509 13 1 5.8722 -6.4711 -2.6162 14 6 6.8420 -6.0282 -4.4882 15 8 7.5162 -4.9248 -5.0965 16 7 7.6807 -5.4707 -2.2596 17 6 8.3027 -6.5467 -1.6846 18 1 7.8960 -7.5387 -1.8149 19 6 9.4560 -6.3624 -0.9344 20 7 10.0507 -7.3960 -0.3772 21 14 10.1591 -4.6466 -0.7084 22 1 11.1271 -4.3610 -1.7977 23 1 9.0582 -3.6509 -0.7508 24 1 10.8510 -4.5638 0.6029 25 6 2.2089 -1.1954 -0.0005 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8899 -0.5141 29 1 1.6675 2.1277 -0.0004 30 1 5.3046 0.1286 0.0094 31 1 3.8465 -3.2031 0.5125 32 1 5.3490 -2.2488 0.5122 33 1 5.7210 -4.4930 -0.9321 34 1 6.1989 -3.5895 -3.5648 35 1 4.6967 -4.5444 -3.5636 36 1 7.4997 -6.8973 -4.4822 37 1 5.9396 -6.2594 -5.0543 38 1 7.7859 -5.0845 -6.0113 39 1 8.0463 -4.5798 -2.1428 40 1 10.8544 -7.2667 0.1504 41 1 1.6889 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755634962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:04 Heat of formation + Delta-G solvation = -45.961393 kcal Electronic energy + Delta-G solvation = -23025.787372 eV Core-core repulsion = 19519.786554 eV Total energy + Delta-G solvation = -3506.000818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55196 -39.26709 -37.29784 -35.07046 -33.74812 -33.62045 -33.58627 -31.56946 -29.27643 -28.08629 -27.44449 -25.14857 -23.42288 -23.20470 -21.67724 -20.26568 -19.88650 -17.99354 -17.09862 -16.94662 -16.80038 -16.74857 -15.96754 -15.18747 -14.70733 -14.45818 -14.40518 -14.10485 -13.60669 -13.42419 -13.34837 -13.17055 -13.13595 -12.89141 -12.77011 -12.68996 -12.54240 -12.15027 -11.60333 -11.53981 -11.03318 -10.89844 -10.74587 -10.16348 -9.93373 -9.69388 -9.60527 -9.54293 -9.47420 -9.04873 -8.88411 -8.74687 -7.39723 -5.87376 -3.24068 0.98637 1.19064 2.81065 3.32309 3.37280 3.38706 3.42897 3.79709 4.28797 4.51535 4.54739 4.58314 4.77604 4.84031 4.87234 4.94547 5.06867 5.16964 5.19065 5.30886 5.34163 5.39308 5.41613 5.52099 5.66805 5.76691 5.79570 5.87810 5.89417 6.06500 6.13738 6.18500 6.34536 6.57234 6.61072 6.75454 7.78423 7.85942 7.89027 8.07552 8.31550 8.44074 9.09366 9.81940 10.02006 11.30234 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.003629 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.072011 B = 7714.028899 C = 8471.312045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.092 3.908 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.104 4.104 7 C -0.103 4.103 8 C 0.511 3.489 9 O -0.545 6.545 10 N -0.717 5.717 11 C 0.116 3.884 12 C 0.172 3.828 13 H 0.074 0.926 14 C 0.059 3.941 15 O -0.565 6.565 16 N -0.739 5.739 17 C -0.251 4.251 18 H 0.090 0.910 19 C 0.010 3.990 20 N -0.930 5.930 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.277 1.277 24 H -0.292 1.292 25 C -0.064 4.064 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.410 0.590 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.367 0.633 39 H 0.366 0.634 40 H 0.261 0.739 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.053 10.184 -0.075 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.065 4.065 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.107 4.107 7 C -0.143 4.143 8 C 0.296 3.704 9 O -0.423 6.423 10 N -0.369 5.369 11 C -0.008 4.008 12 C 0.061 3.939 13 H 0.092 0.908 14 C -0.022 4.022 15 O -0.369 6.369 16 N -0.382 5.382 17 C -0.381 4.381 18 H 0.108 0.892 19 C -0.186 4.186 20 N -0.577 5.577 21 Si 0.716 3.284 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.218 1.218 25 C -0.090 4.090 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.246 0.754 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.212 0.788 39 H 0.199 0.801 40 H 0.071 0.929 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.936 11.482 -0.049 20.461 hybrid contribution 0.619 -0.387 -0.122 0.740 sum -16.317 11.095 -0.170 19.732 Atomic orbital electron populations 1.20704 0.90278 1.03139 1.02419 1.20880 0.97492 0.94109 1.01665 1.22623 0.90030 0.97342 0.96546 1.67671 1.08334 1.31103 1.11731 1.22599 1.00247 0.87111 0.95124 1.20307 0.94249 0.95526 1.00589 1.20633 1.02041 0.95923 0.95727 1.20375 0.78386 0.80800 0.90791 1.90702 1.51679 1.53657 1.46235 1.46030 1.54520 1.26279 1.10049 1.21589 0.99029 0.98064 0.82166 1.20565 0.88595 0.94893 0.89823 0.90802 1.22999 0.94540 0.89462 0.95237 1.86519 1.79264 1.40592 1.30502 1.42729 1.27985 1.06939 1.60523 1.19041 1.05874 0.88422 1.24767 0.89178 1.24653 0.97615 0.96654 0.99725 1.69702 1.21425 1.28603 1.38010 0.86553 0.79283 0.85293 0.77318 1.21043 1.20291 1.21808 1.21317 0.93267 0.98248 0.96165 0.90998 0.91222 0.91335 0.83078 0.82985 0.87621 0.87366 0.75437 0.90675 0.91795 0.92755 0.95132 0.78836 0.80054 0.92943 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.04 36.01 0.36 -0.40 16 2 C -0.14 -1.45 5.90 -104.48 -0.62 -2.07 16 3 C 0.09 1.05 10.86 -17.54 -0.19 0.86 16 4 N -0.48 -6.63 10.36 -13.25 -0.14 -6.77 16 5 C 0.11 1.42 10.86 -17.55 -0.19 1.23 16 6 C -0.10 -1.30 4.39 -104.49 -0.46 -1.75 16 7 C -0.10 -1.17 5.86 -29.04 -0.17 -1.34 16 8 C 0.51 7.74 7.82 -10.98 -0.09 7.66 16 9 O -0.54 -10.21 16.03 5.56 0.09 -10.13 16 10 N -0.72 -10.96 5.39 -60.30 -0.32 -11.28 16 11 C 0.12 1.90 5.12 -4.05 -0.02 1.88 16 12 C 0.17 3.03 2.84 -67.93 -0.19 2.84 16 13 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 14 C 0.06 0.95 6.86 37.16 0.25 1.21 16 15 O -0.57 -9.34 12.64 -35.23 -0.45 -9.78 16 16 N -0.74 -16.15 4.31 -53.43 -0.23 -16.38 16 17 C -0.25 -6.56 10.41 -15.06 -0.16 -6.71 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -27.97 13.97 55.49 0.78 -27.19 16 21 Si 0.89 21.56 27.74 -169.99 -4.72 16.85 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.33 6.51 56.52 0.37 -5.96 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.06 -0.72 9.55 -39.28 -0.37 -1.09 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.11 1.09 8.09 -51.92 -0.42 0.67 16 33 H 0.41 6.08 8.14 -40.82 -0.33 5.75 16 34 H 0.07 1.40 7.40 -51.92 -0.38 1.01 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 4.30 9.12 45.56 0.42 4.71 16 39 H 0.37 8.32 5.65 -40.82 -0.23 8.09 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -34.52 351.04 -6.82 -41.34 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.18 Total: 15.57 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.94 Total: 2.48 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.08 Total: -61.62 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.36 Total: -19.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.52 -6.82 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755634962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.620 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds