Wall clock time and date at job start Fri Apr 10 2020 17:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38228 * 120.41563 * 2 1 4 4 N 1.31862 * 120.76021 * 180.02562 * 3 2 1 5 5 C 1.31887 * 121.72328 * 359.69846 * 4 3 2 6 6 C 1.38181 * 120.76757 * 0.58552 * 5 4 3 7 7 C 1.50690 * 120.42060 * 179.70360 * 6 5 4 8 8 C 1.50703 * 109.47154 * 269.72643 * 7 6 5 9 9 O 1.21273 * 120.00280 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00160 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00398 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47346 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.47177 * 65.00353 * 12 11 10 14 14 C 1.53006 * 109.47133 * 185.00123 * 12 11 10 15 15 O 1.42903 * 109.47139 * 55.00254 * 14 12 11 16 16 N 1.46493 * 109.47542 * 305.00099 * 12 11 10 17 17 C 1.36936 * 120.00314 * 154.99721 * 16 12 11 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 12 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 12 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.38625 * 120.41918 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47435 * 269.98056 * 1 2 3 27 27 H 1.09000 * 109.47043 * 29.98417 * 1 2 3 28 28 H 1.09000 * 109.46798 * 149.98509 * 1 2 3 29 29 H 1.08000 * 119.62106 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.61566 * 180.31608 * 5 4 3 31 31 H 1.08997 * 109.47830 * 149.72256 * 7 6 5 32 32 H 1.09008 * 109.47035 * 29.72310 * 7 6 5 33 33 H 0.96998 * 119.99643 * 359.97438 * 10 8 7 34 34 H 1.09009 * 109.46774 * 60.00205 * 11 10 8 35 35 H 1.09002 * 109.47338 * 300.00832 * 11 10 8 36 36 H 1.08997 * 109.47285 * 175.00337 * 14 12 11 37 37 H 1.09002 * 109.47155 * 295.00382 * 14 12 11 38 38 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 39 39 H 0.97000 * 120.00040 * 334.99853 * 16 12 11 40 40 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 41 41 H 1.07996 * 120.79271 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5255 1.2000 -0.0005 5 6 4.2257 0.0824 0.0049 6 6 3.5949 -1.1471 -0.0008 7 6 4.4027 -2.4191 -0.0014 8 6 4.6715 -2.8429 -1.4224 9 8 4.2484 -2.1778 -2.3439 10 7 5.3822 -3.9612 -1.6691 11 6 5.6431 -4.3735 -3.0504 12 6 6.4634 -5.6650 -3.0509 13 1 5.8722 -6.4711 -2.6162 14 6 6.8420 -6.0282 -4.4882 15 8 7.5162 -4.9248 -5.0965 16 7 7.6807 -5.4707 -2.2596 17 6 8.3027 -6.5467 -1.6846 18 1 7.8960 -7.5387 -1.8149 19 6 9.4560 -6.3624 -0.9344 20 7 10.0507 -7.3960 -0.3772 21 14 10.1591 -4.6466 -0.7084 22 1 11.1271 -4.3610 -1.7977 23 1 9.0582 -3.6509 -0.7508 24 1 10.8510 -4.5638 0.6029 25 6 2.2089 -1.1954 -0.0005 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3633 -0.8899 -0.5141 29 1 1.6675 2.1277 -0.0004 30 1 5.3046 0.1286 0.0094 31 1 3.8465 -3.2031 0.5125 32 1 5.3490 -2.2488 0.5122 33 1 5.7210 -4.4930 -0.9321 34 1 6.1989 -3.5895 -3.5648 35 1 4.6967 -4.5444 -3.5636 36 1 7.4997 -6.8973 -4.4822 37 1 5.9396 -6.2594 -5.0543 38 1 7.7859 -5.0845 -6.0113 39 1 8.0463 -4.5798 -2.1428 40 1 10.8544 -7.2667 0.1504 41 1 1.6889 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755634962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:04 Heat of formation + Delta-G solvation = -73.558012 kcal Electronic energy + Delta-G solvation = -23026.984051 eV Core-core repulsion = 19519.786554 eV Total energy + Delta-G solvation = -3507.197497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48373 -40.43340 -38.69854 -36.46245 -35.21624 -34.59096 -34.49376 -33.36834 -30.81560 -29.15288 -28.15907 -26.38189 -25.26082 -24.16175 -22.59873 -21.70541 -21.08123 -19.83601 -18.30046 -18.07023 -17.86536 -17.68373 -17.30895 -16.60208 -16.14631 -15.85881 -15.32536 -15.13654 -15.01052 -14.84012 -14.53655 -14.32882 -14.25523 -14.14236 -13.97374 -13.51583 -13.36175 -13.24973 -13.05753 -12.77689 -12.62512 -12.35487 -12.29870 -11.87652 -11.77363 -11.15655 -10.99062 -10.76115 -10.50553 -10.42297 -10.03226 -9.74106 -9.32707 -8.00351 -5.32885 0.12006 0.33057 1.38451 1.43517 1.48132 1.64488 2.26332 2.49495 2.86667 3.31800 3.45257 3.46620 3.69755 3.70052 3.83396 3.92221 4.02396 4.05891 4.07128 4.25654 4.39609 4.44588 4.53055 4.60723 4.61521 4.76748 4.82670 4.84352 4.91508 4.97805 5.17907 5.19436 5.25730 5.32829 5.49167 5.79172 5.79307 6.23216 6.58813 7.00657 7.01612 7.09458 7.25620 7.84134 8.03157 9.20543 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.003629 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.072011 B = 7714.028899 C = 8471.312045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.138 4.138 3 C 0.078 3.922 4 N -0.509 5.509 5 C 0.081 3.919 6 C -0.115 4.115 7 C -0.095 4.095 8 C 0.512 3.488 9 O -0.583 6.583 10 N -0.716 5.716 11 C 0.128 3.872 12 C 0.167 3.833 13 H 0.083 0.917 14 C 0.064 3.936 15 O -0.584 6.584 16 N -0.740 5.740 17 C -0.221 4.221 18 H 0.068 0.932 19 C -0.054 4.054 20 N -0.980 5.980 21 Si 0.945 3.055 22 H -0.293 1.293 23 H -0.253 1.253 24 H -0.297 1.297 25 C -0.075 4.075 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.175 0.825 30 H 0.153 0.847 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.413 0.587 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.388 0.612 39 H 0.363 0.637 40 H 0.256 0.744 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 11.082 -0.234 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C -0.079 4.079 4 N -0.217 5.217 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.299 3.701 9 O -0.463 6.463 10 N -0.368 5.368 11 C 0.003 3.997 12 C 0.058 3.942 13 H 0.101 0.899 14 C -0.017 4.017 15 O -0.391 6.391 16 N -0.383 5.383 17 C -0.352 4.352 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.631 5.631 21 Si 0.774 3.226 22 H -0.221 1.221 23 H -0.178 1.178 24 H -0.224 1.224 25 C -0.101 4.101 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.140 0.860 33 H 0.250 0.750 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.196 0.804 40 H 0.065 0.935 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.134 12.392 -0.245 22.798 hybrid contribution 1.157 -0.684 -0.178 1.356 sum -17.977 11.708 -0.423 21.458 Atomic orbital electron populations 1.20776 0.87724 1.04070 1.03694 1.21272 0.99329 0.93437 0.99911 1.23114 0.89563 0.98965 0.96248 1.67640 1.09686 1.31665 1.12750 1.22748 1.00608 0.87748 0.96449 1.20432 0.95015 0.95400 1.00837 1.20663 1.03156 0.96356 0.93343 1.20963 0.77242 0.79918 0.91942 1.90685 1.53181 1.54667 1.47812 1.46035 1.54508 1.26535 1.09672 1.21383 0.99012 0.96396 0.82900 1.20814 0.87117 0.96003 0.90262 0.89925 1.22832 0.95663 0.88532 0.94691 1.86465 1.79525 1.40743 1.32384 1.42703 1.29047 1.05542 1.60999 1.19012 1.04862 0.88591 1.22693 0.91430 1.25294 0.98714 0.99825 1.00797 1.69850 1.22328 1.30778 1.40116 0.85571 0.78801 0.81893 0.76325 1.22064 1.17801 1.22434 1.21677 0.93071 0.99532 0.95814 0.89398 0.90004 0.90719 0.80777 0.82966 0.84647 0.85999 0.75034 0.92750 0.90295 0.94687 0.91394 0.76405 0.80366 0.93478 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.04 71.24 0.72 -0.45 16 2 C -0.14 -2.58 5.90 -19.77 -0.12 -2.70 16 3 C 0.08 1.68 10.86 84.69 0.92 2.60 16 4 N -0.51 -13.86 10.36 -195.84 -2.03 -15.89 16 5 C 0.08 2.13 10.86 84.67 0.92 3.05 16 6 C -0.11 -2.68 4.39 -19.78 -0.09 -2.77 16 7 C -0.10 -1.96 5.86 29.10 0.17 -1.79 16 8 C 0.51 14.60 7.82 87.66 0.69 15.29 16 9 O -0.58 -21.21 16.03 -3.01 -0.05 -21.26 16 10 N -0.72 -20.44 5.39 -463.07 -2.49 -22.94 16 11 C 0.13 3.93 5.12 86.38 0.44 4.38 16 12 C 0.17 5.56 2.84 44.99 0.13 5.69 16 13 H 0.08 2.64 8.08 -2.39 -0.02 2.62 16 14 C 0.06 1.93 6.86 71.98 0.49 2.42 16 15 O -0.58 -18.14 12.64 -148.98 -1.88 -20.02 16 16 N -0.74 -31.34 4.31 -322.95 -1.39 -32.74 16 17 C -0.22 -11.44 10.41 84.03 0.87 -10.57 16 18 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 19 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 20 N -0.98 -60.01 13.97 21.65 0.30 -59.71 16 21 Si 0.94 44.56 27.74 68.60 1.90 46.46 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.25 -10.78 6.51 99.48 0.65 -10.14 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 C -0.08 -1.54 9.55 22.47 0.21 -1.32 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 29 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.14 1.95 8.10 -2.39 -0.02 1.93 16 32 H 0.12 2.18 8.09 -2.38 -0.02 2.16 16 33 H 0.41 11.34 8.14 -92.71 -0.75 10.59 16 34 H 0.05 1.94 7.40 -2.38 -0.02 1.92 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.39 8.25 9.12 -74.06 -0.68 7.57 16 39 H 0.36 15.87 5.65 -92.71 -0.52 15.34 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -75.14 351.04 -0.76 -75.90 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.95 Total: 38.92 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.83 Total: 11.26 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -5.61 Total: -131.27 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -1.93 Total: -41.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -75.14 -0.76 -75.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755634962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.347 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds