Wall clock time and date at job start Fri Apr 10 2020 17:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34220 * 116.99940 * 2 1 4 4 O 1.20826 * 120.00040 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99928 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46802 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99856 * 269.98955 * 6 5 3 8 8 H 1.07994 * 119.99950 * 187.62679 * 7 6 5 9 9 C 1.38810 * 119.99693 * 7.63510 * 7 6 5 10 10 N 1.31619 * 120.00607 * 25.29389 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 205.29608 * 9 7 6 12 12 H 1.48497 * 109.47364 * 89.99597 * 11 9 7 13 13 H 1.48497 * 109.47660 * 209.99936 * 11 9 7 14 14 H 1.48503 * 109.46864 * 329.99797 * 11 9 7 15 15 C 1.46496 * 120.00106 * 89.99882 * 6 5 3 16 16 C 1.50701 * 109.47324 * 89.48464 * 15 6 5 17 17 C 1.38889 * 120.33612 * 89.55013 * 16 15 6 18 18 C 1.38292 * 118.50823 * 180.02562 * 17 16 15 19 19 C 1.39139 * 119.09684 * 359.97438 * 18 17 16 20 20 N 1.38999 * 119.70765 * 180.02562 * 19 18 17 21 21 C 1.46496 * 119.99950 * 4.98239 * 20 19 18 22 22 C 1.46503 * 120.00191 * 184.97642 * 20 19 18 23 23 N 1.32401 * 120.58792 * 359.97438 * 19 18 17 24 24 C 1.31974 * 121.62243 * 0.02562 * 23 19 18 25 25 H 1.09003 * 109.47094 * 300.00035 * 1 2 3 26 26 H 1.08998 * 109.47707 * 59.99773 * 1 2 3 27 27 H 1.09004 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47307 * 59.99584 * 5 3 2 29 29 H 1.09000 * 109.46241 * 299.99583 * 5 3 2 30 30 H 0.96998 * 120.00302 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.47377 * 329.48347 * 15 6 5 32 32 H 1.09000 * 109.47004 * 209.48260 * 15 6 5 33 33 H 1.07999 * 120.74437 * 0.02562 * 17 16 15 34 34 H 1.07998 * 120.45402 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47380 * 89.99507 * 21 20 19 36 36 H 1.08998 * 109.47122 * 210.00128 * 21 20 19 37 37 H 1.08999 * 109.47121 * 329.99873 * 21 20 19 38 38 H 1.09005 * 109.46684 * 89.99749 * 22 20 19 39 39 H 1.08998 * 109.47380 * 210.00204 * 22 20 19 40 40 H 1.08999 * 109.46874 * 330.00608 * 22 20 19 41 41 H 1.07997 * 119.57094 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1754 3.3370 -1.1854 8 1 4.5986 4.3306 -1.1891 9 6 3.8278 2.7262 -2.3825 10 7 2.8986 1.7941 -2.4003 11 14 4.6788 3.2269 -3.9682 12 1 5.8820 2.3808 -4.1728 13 1 3.7461 3.0453 -5.1094 14 1 5.0850 4.6527 -3.8830 15 6 4.1898 3.3813 1.2692 16 6 5.6205 3.2086 1.7100 17 6 6.5926 4.1158 1.3087 18 6 7.8937 3.9207 1.7348 19 6 8.1831 2.8287 2.5470 20 7 9.4864 2.6207 2.9831 21 6 10.5266 3.6065 2.6792 22 6 9.8199 1.4158 3.7469 23 7 7.2279 1.9863 2.9090 24 6 5.9779 2.1478 2.5174 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.9557 0.7808 -0.8907 29 1 3.9563 0.7805 0.8892 30 1 2.6560 1.3671 -3.2367 31 1 3.5239 2.9678 2.0265 32 1 3.9758 4.4420 1.1373 33 1 6.3381 4.9547 0.6780 34 1 8.6744 4.6070 1.4419 35 1 10.5708 4.3463 3.4785 36 1 11.4901 3.1039 2.5954 37 1 10.2926 4.1029 1.7374 38 1 10.1162 0.6217 3.0615 39 1 10.6424 1.6335 4.4282 40 1 8.9491 1.0957 4.3190 41 1 5.2252 1.4403 2.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129161727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:41 Heat of formation + Delta-G solvation = 0.246594 kcal Electronic energy + Delta-G solvation = -23838.380004 eV Core-core repulsion = 20334.382914 eV Total energy + Delta-G solvation = -3503.997089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.91740 -38.88989 -36.74798 -35.68687 -34.51298 -32.39113 -31.50728 -30.02390 -28.21264 -28.05579 -26.35911 -25.91963 -24.08892 -22.80627 -21.83188 -20.52019 -19.60997 -17.27660 -16.90493 -16.24465 -16.16801 -15.51886 -15.20103 -15.07903 -14.77148 -14.59416 -14.24731 -13.88062 -13.68605 -13.23876 -12.91778 -12.67018 -12.59743 -12.37059 -12.17892 -12.10640 -11.92664 -11.50268 -11.41548 -11.08188 -10.89481 -10.75026 -10.41641 -10.12784 -9.99810 -9.59672 -9.50654 -9.25745 -9.18389 -8.93025 -8.48774 -7.24946 -7.07582 -5.92384 -3.18079 1.73308 1.94470 3.10263 3.36902 3.44226 3.45441 3.89789 4.06890 4.34605 4.52371 4.79268 5.07708 5.21778 5.27049 5.28150 5.44513 5.46854 5.48728 5.60958 5.67121 5.69784 5.77419 5.83313 5.89058 5.96697 6.00071 6.12729 6.30929 6.35365 6.47821 6.55385 6.78442 6.93543 7.04024 7.12948 7.17311 7.62450 7.67615 7.80977 8.15387 8.53524 9.01998 9.41692 9.72162 10.12540 11.18942 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.004820 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.608771 B = 5808.310661 C = 6991.056466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.382 6.382 3 C 0.467 3.533 4 O -0.510 6.510 5 C 0.189 3.811 6 N -0.562 5.562 7 C -0.247 4.247 8 H 0.081 0.919 9 C 0.001 3.999 10 N -0.903 5.903 11 Si 0.905 3.095 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.280 1.280 15 C 0.193 3.807 16 C -0.182 4.182 17 C -0.016 4.016 18 C -0.241 4.241 19 C 0.384 3.616 20 N -0.627 5.627 21 C 0.100 3.900 22 C 0.104 3.896 23 N -0.545 5.545 24 C 0.146 3.854 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 -0.371 10.129 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.307 3.693 4 O -0.395 6.395 5 C 0.059 3.941 6 N -0.281 5.281 7 C -0.375 4.375 8 H 0.099 0.901 9 C -0.197 4.197 10 N -0.549 5.549 11 Si 0.735 3.265 12 H -0.215 1.215 13 H -0.220 1.220 14 H -0.206 1.206 15 C 0.065 3.935 16 C -0.189 4.189 17 C -0.043 4.043 18 C -0.265 4.265 19 C 0.151 3.849 20 N -0.344 5.344 21 C -0.044 4.044 22 C -0.039 4.039 23 N -0.261 5.261 24 C -0.011 4.011 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.527 -0.839 10.554 14.243 hybrid contribution -0.157 0.962 -1.718 1.975 sum 9.370 0.123 8.836 12.880 Atomic orbital electron populations 1.22845 0.79985 1.01236 1.01187 1.86551 1.20854 1.36843 1.85739 1.25585 0.93496 0.80141 0.70056 1.90456 1.66711 1.36515 1.45808 1.20463 0.85348 0.86670 1.01570 1.44019 1.75018 1.07599 1.01464 1.19252 1.34904 1.00605 0.82783 0.90087 1.24700 0.97671 0.99430 0.97870 1.69850 1.28319 1.30351 1.26344 0.86230 0.79257 0.78047 0.82986 1.21477 1.21985 1.20557 1.19595 0.88555 0.97357 0.87944 1.21650 1.00132 0.96893 1.00244 1.21210 0.91348 0.97624 0.94099 1.21352 0.98140 1.01436 1.05556 1.18208 0.85283 0.90535 0.90882 1.46014 1.05058 1.23451 1.59886 1.21601 0.90093 0.91783 1.00901 1.21453 1.01096 0.86360 0.95012 1.67061 1.01191 1.30162 1.27724 1.22206 0.91066 0.94917 0.92898 0.93688 0.92915 0.90213 0.86754 0.93119 0.93212 0.93291 0.92138 0.85292 0.85818 0.93548 0.91590 0.91161 0.93997 0.92565 0.90377 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.41 10.56 -39.23 -0.41 -8.83 16 3 C 0.47 11.46 6.05 36.01 0.22 11.67 16 4 O -0.51 -14.03 15.95 -18.75 -0.30 -14.33 16 5 C 0.19 4.41 5.54 -5.19 -0.03 4.38 16 6 N -0.56 -13.36 2.00 -175.99 -0.35 -13.71 16 7 C -0.25 -6.46 9.70 -15.06 -0.15 -6.61 16 8 H 0.08 2.07 7.95 -52.49 -0.42 1.65 16 9 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 10 N -0.90 -25.44 9.00 55.49 0.50 -24.94 16 11 Si 0.90 21.53 29.62 -169.99 -5.04 16.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.19 3.82 5.81 -5.20 -0.03 3.79 16 16 C -0.18 -3.25 5.48 -104.46 -0.57 -3.82 16 17 C -0.02 -0.27 9.85 -39.32 -0.39 -0.66 16 18 C -0.24 -3.69 9.27 -39.23 -0.36 -4.05 16 19 C 0.38 6.12 7.37 -155.02 -1.14 4.97 16 20 N -0.63 -8.15 3.39 -189.67 -0.64 -8.79 16 21 C 0.10 0.93 10.28 59.84 0.62 1.55 16 22 C 0.10 1.15 10.50 59.85 0.63 1.78 16 23 N -0.54 -9.32 9.08 -12.44 -0.11 -9.43 16 24 C 0.15 2.49 10.84 -17.57 -0.19 2.30 16 25 H 0.04 0.77 8.13 -51.93 -0.42 0.34 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.11 2.92 6.25 -51.93 -0.32 2.60 16 29 H 0.05 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16 32 H 0.06 1.20 7.99 -51.93 -0.41 0.79 16 33 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.12 1.58 6.03 -52.49 -0.32 1.26 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 37 H 0.07 0.65 5.98 -51.93 -0.31 0.34 16 38 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 40 H 0.08 0.96 7.30 -51.93 -0.38 0.58 16 41 H 0.15 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -32.74 345.94 -7.49 -40.23 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.93 Total: 1.02 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: -0.42 Total: 17.07 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.61 Total: -56.88 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.71 Total: -23.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.04 Total: 16.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.74 -7.49 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129161727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.479 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds