Wall clock time and date at job start Fri Apr 10 2020 17:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34220 * 116.99940 * 2 1 4 4 O 1.20826 * 120.00040 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99928 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46802 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99856 * 269.98955 * 6 5 3 8 8 H 1.07994 * 119.99950 * 187.62679 * 7 6 5 9 9 C 1.38810 * 119.99693 * 7.63510 * 7 6 5 10 10 N 1.31619 * 120.00607 * 25.29389 * 9 7 6 11 11 Si 1.86803 * 119.99961 * 205.29608 * 9 7 6 12 12 H 1.48497 * 109.47364 * 89.99597 * 11 9 7 13 13 H 1.48497 * 109.47660 * 209.99936 * 11 9 7 14 14 H 1.48503 * 109.46864 * 329.99797 * 11 9 7 15 15 C 1.46496 * 120.00106 * 89.99882 * 6 5 3 16 16 C 1.50701 * 109.47324 * 89.48464 * 15 6 5 17 17 C 1.38889 * 120.33612 * 89.55013 * 16 15 6 18 18 C 1.38292 * 118.50823 * 180.02562 * 17 16 15 19 19 C 1.39139 * 119.09684 * 359.97438 * 18 17 16 20 20 N 1.38999 * 119.70765 * 180.02562 * 19 18 17 21 21 C 1.46496 * 119.99950 * 4.98239 * 20 19 18 22 22 C 1.46503 * 120.00191 * 184.97642 * 20 19 18 23 23 N 1.32401 * 120.58792 * 359.97438 * 19 18 17 24 24 C 1.31974 * 121.62243 * 0.02562 * 23 19 18 25 25 H 1.09003 * 109.47094 * 300.00035 * 1 2 3 26 26 H 1.08998 * 109.47707 * 59.99773 * 1 2 3 27 27 H 1.09004 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47307 * 59.99584 * 5 3 2 29 29 H 1.09000 * 109.46241 * 299.99583 * 5 3 2 30 30 H 0.96998 * 120.00302 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.47377 * 329.48347 * 15 6 5 32 32 H 1.09000 * 109.47004 * 209.48260 * 15 6 5 33 33 H 1.07999 * 120.74437 * 0.02562 * 17 16 15 34 34 H 1.07998 * 120.45402 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47380 * 89.99507 * 21 20 19 36 36 H 1.08998 * 109.47122 * 210.00128 * 21 20 19 37 37 H 1.08999 * 109.47121 * 329.99873 * 21 20 19 38 38 H 1.09005 * 109.46684 * 89.99749 * 22 20 19 39 39 H 1.08998 * 109.47380 * 210.00204 * 22 20 19 40 40 H 1.08999 * 109.46874 * 330.00608 * 22 20 19 41 41 H 1.07997 * 119.57094 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9816 2.6797 0.0002 7 6 4.1754 3.3370 -1.1854 8 1 4.5986 4.3306 -1.1891 9 6 3.8278 2.7262 -2.3825 10 7 2.8986 1.7941 -2.4003 11 14 4.6788 3.2269 -3.9682 12 1 5.8820 2.3808 -4.1728 13 1 3.7461 3.0453 -5.1094 14 1 5.0850 4.6527 -3.8830 15 6 4.1898 3.3813 1.2692 16 6 5.6205 3.2086 1.7100 17 6 6.5926 4.1158 1.3087 18 6 7.8937 3.9207 1.7348 19 6 8.1831 2.8287 2.5470 20 7 9.4864 2.6207 2.9831 21 6 10.5266 3.6065 2.6792 22 6 9.8199 1.4158 3.7469 23 7 7.2279 1.9863 2.9090 24 6 5.9779 2.1478 2.5174 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.9557 0.7808 -0.8907 29 1 3.9563 0.7805 0.8892 30 1 2.6560 1.3671 -3.2367 31 1 3.5239 2.9678 2.0265 32 1 3.9758 4.4420 1.1373 33 1 6.3381 4.9547 0.6780 34 1 8.6744 4.6070 1.4419 35 1 10.5708 4.3463 3.4785 36 1 11.4901 3.1039 2.5954 37 1 10.2926 4.1029 1.7374 38 1 10.1162 0.6217 3.0615 39 1 10.6424 1.6335 4.4282 40 1 8.9491 1.0957 4.3190 41 1 5.2252 1.4403 2.8322 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129161727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:41 Heat of formation + Delta-G solvation = -18.011884 kcal Electronic energy + Delta-G solvation = -23839.171751 eV Core-core repulsion = 20334.382914 eV Total energy + Delta-G solvation = -3504.788836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16708 -40.71615 -38.13452 -37.15726 -36.34740 -33.94735 -32.99563 -31.52563 -29.79829 -29.00231 -27.77079 -27.63086 -25.42221 -24.10485 -23.38640 -21.90560 -21.36007 -18.86975 -18.28326 -18.07474 -17.41811 -17.31537 -16.85942 -16.53703 -16.16599 -15.91884 -15.47652 -15.34391 -15.21857 -14.81485 -14.22921 -14.04433 -13.88139 -13.77606 -13.37442 -13.34204 -13.14462 -12.91131 -12.80507 -12.70060 -12.58395 -12.45867 -12.15092 -11.97217 -11.93166 -11.36259 -11.09250 -10.70070 -10.50680 -10.49647 -10.21418 -9.03390 -8.31615 -7.92888 -5.19222 0.48054 0.65695 1.47669 1.50577 1.57367 2.02437 2.14013 2.35533 2.57391 3.06295 3.28629 3.70586 3.72834 4.09426 4.20379 4.25997 4.37936 4.41532 4.47805 4.50742 4.52401 4.54696 4.60521 4.67489 4.70577 4.85848 4.89735 4.94595 5.00941 5.05716 5.10872 5.22425 5.28240 5.63727 5.67662 5.79925 5.97510 6.16036 6.21172 6.50189 7.04152 7.31344 7.51967 7.81581 8.18331 9.15728 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.004820 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.608771 B = 5808.310661 C = 6991.056466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.470 3.530 4 O -0.547 6.547 5 C 0.190 3.810 6 N -0.575 5.575 7 C -0.245 4.245 8 H 0.083 0.917 9 C -0.051 4.051 10 N -0.930 5.930 11 Si 0.962 3.038 12 H -0.287 1.287 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.198 3.802 16 C -0.198 4.198 17 C -0.025 4.025 18 C -0.240 4.240 19 C 0.376 3.624 20 N -0.629 5.629 21 C 0.092 3.908 22 C 0.101 3.899 23 N -0.560 5.560 24 C 0.143 3.857 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.409 -0.330 11.052 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.303 6.303 3 C 0.312 3.688 4 O -0.435 6.435 5 C 0.061 3.939 6 N -0.294 5.294 7 C -0.374 4.374 8 H 0.101 0.899 9 C -0.245 4.245 10 N -0.578 5.578 11 Si 0.792 3.208 12 H -0.215 1.215 13 H -0.232 1.232 14 H -0.195 1.195 15 C 0.072 3.928 16 C -0.205 4.205 17 C -0.051 4.051 18 C -0.265 4.265 19 C 0.141 3.859 20 N -0.345 5.345 21 C -0.050 4.050 22 C -0.041 4.041 23 N -0.278 5.278 24 C -0.013 4.013 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.539 -0.796 11.517 16.323 hybrid contribution -0.702 0.928 -1.884 2.215 sum 10.836 0.132 9.633 14.500 Atomic orbital electron populations 1.23155 0.77606 1.04106 1.00707 1.86506 1.23174 1.35471 1.85162 1.25749 0.93972 0.80157 0.68912 1.90427 1.67609 1.37788 1.47718 1.20419 0.84884 0.86810 1.01811 1.44207 1.75177 1.07835 1.02135 1.19532 1.33409 1.00624 0.83853 0.89898 1.25342 0.98514 1.00279 1.00399 1.69995 1.29807 1.31861 1.26099 0.85315 0.77830 0.78088 0.79559 1.21451 1.23175 1.19537 1.19601 0.90139 0.96547 0.86518 1.21345 0.98923 0.98260 1.01979 1.21349 0.91957 0.97597 0.94201 1.21581 0.98140 1.01732 1.05002 1.18597 0.86339 0.90337 0.90583 1.46392 1.04535 1.24422 1.59128 1.21858 0.90000 0.91675 1.01447 1.21556 1.01468 0.85884 0.95236 1.67126 1.01355 1.30910 1.28421 1.22347 0.91578 0.94792 0.92620 0.92814 0.94784 0.85674 0.89076 0.90001 0.94212 0.92723 0.92766 0.84964 0.83190 0.92175 0.89248 0.90999 0.93938 0.89465 0.91944 0.82485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.34 10.56 113.37 1.20 2.54 16 2 O -0.39 -16.86 10.56 -51.32 -0.54 -17.40 16 3 C 0.47 23.25 6.05 71.24 0.43 23.68 16 4 O -0.55 -30.58 15.95 21.96 0.35 -30.23 16 5 C 0.19 8.93 5.54 85.64 0.47 9.41 16 6 N -0.57 -27.44 2.00 -710.71 -1.42 -28.86 16 7 C -0.24 -12.88 9.70 84.03 0.81 -12.07 16 8 H 0.08 4.23 7.95 -2.91 -0.02 4.21 16 9 C -0.05 -2.79 4.90 84.86 0.42 -2.37 16 10 N -0.93 -53.48 9.00 21.65 0.19 -53.29 16 11 Si 0.96 44.78 29.62 68.60 2.03 46.82 16 12 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 C 0.20 7.85 5.81 85.63 0.50 8.35 16 16 C -0.20 -6.97 5.48 -19.76 -0.11 -7.07 16 17 C -0.02 -0.80 9.85 22.44 0.22 -0.58 16 18 C -0.24 -6.91 9.27 22.50 0.21 -6.70 16 19 C 0.38 11.29 7.37 133.07 0.98 12.27 16 20 N -0.63 -14.67 3.39 -753.98 -2.56 -17.23 16 21 C 0.09 1.40 10.28 127.77 1.31 2.72 16 22 C 0.10 2.00 10.50 127.77 1.34 3.34 16 23 N -0.56 -18.54 9.08 -193.27 -1.75 -20.29 16 24 C 0.14 4.79 10.84 84.62 0.92 5.70 16 25 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 26 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.13 3.20 8.14 -2.38 -0.02 3.18 16 28 H 0.09 4.74 6.25 -2.39 -0.01 4.73 16 29 H 0.08 3.25 8.07 -2.39 -0.02 3.23 16 30 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.05 2.06 8.02 -2.39 -0.02 2.04 16 32 H 0.05 2.17 7.99 -2.39 -0.02 2.15 16 33 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.15 3.40 6.03 -2.91 -0.02 3.38 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.96 8.07 -2.39 -0.02 0.94 16 37 H 0.07 1.08 5.98 -2.39 -0.01 1.07 16 38 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 40 H 0.06 1.44 7.30 -2.39 -0.02 1.42 16 41 H 0.16 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -70.68 345.94 6.03 -64.65 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.02 Total: 16.62 kcal Atomic # 6 Polarization: 30.51 SS G_CDS: 8.71 Total: 39.21 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -5.54 Total: -119.67 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -0.19 Total: -47.63 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.68 6.03 -64.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129161727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.638 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds