Wall clock time and date at job start Fri Apr 10 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47329 * 240.00261 * 3 2 1 5 5 H 1.48499 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46866 * 120.00092 * 3 2 1 7 7 C 1.38946 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.73332 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53042 * 109.51991 * 185.83890 * 14 13 12 16 16 C 1.53108 * 109.28196 * 300.82034 * 15 14 13 17 17 C 1.53002 * 109.52692 * 177.56315 * 16 15 14 18 18 N 1.46500 * 109.47007 * 65.31572 * 17 16 15 19 19 C 1.35309 * 125.86482 * 125.00384 * 18 17 16 20 20 C 1.35355 * 106.17240 * 179.97438 * 19 18 17 21 21 N 1.33767 * 106.49836 * 0.02562 * 20 19 18 22 22 N 1.28638 * 108.88370 * 359.72939 * 21 20 19 23 23 C 1.53127 * 109.16238 * 57.65720 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99644 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.73073 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.73252 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.08993 * 109.45955 * 65.82786 * 14 13 12 31 31 H 1.09005 * 109.49799 * 180.87612 * 15 14 13 32 32 H 1.09001 * 109.50127 * 60.76638 * 15 14 13 33 33 H 1.09003 * 109.52716 * 297.75527 * 16 15 14 34 34 H 1.09001 * 109.47545 * 185.32319 * 17 16 15 35 35 H 1.09001 * 109.46490 * 305.31875 * 17 16 15 36 36 H 1.07998 * 126.91360 * 359.97438 * 19 18 17 37 37 H 1.08001 * 126.74841 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.50293 * 182.40848 * 23 16 15 39 39 H 1.08998 * 109.50093 * 62.28250 * 23 16 15 40 40 H 1.08992 * 109.46257 * 294.17720 * 24 13 12 41 41 H 1.09001 * 109.46118 * 54.14126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1911 -5.9754 -0.1522 14 6 1.5323 -7.2647 0.0928 15 6 2.5754 -8.3843 0.0706 16 6 3.2738 -8.3976 -1.2918 17 6 4.3598 -9.4754 -1.2993 18 7 3.7378 -10.7962 -1.1777 19 6 3.9093 -11.8345 -2.0282 20 6 3.1574 -12.8491 -1.5409 21 7 2.5700 -12.3876 -0.4313 22 7 2.9385 -11.1700 -0.2406 23 6 3.9105 -7.0280 -1.5437 24 6 2.8287 -5.9477 -1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.7035 -4.9710 0.9394 28 1 0.5359 -4.8734 -0.8299 29 1 1.0431 -7.2433 1.0667 30 1 0.7886 -7.4457 -0.6831 31 1 2.0839 -9.3429 0.2371 32 1 3.3118 -8.2112 0.8554 33 1 2.5440 -8.6093 -2.0733 34 1 4.9188 -9.4216 -2.2335 35 1 5.0373 -9.3142 -0.4608 36 1 4.5227 -11.8506 -2.9169 37 1 3.0517 -13.8366 -1.9652 38 1 4.3727 -7.0175 -2.5307 39 1 4.6679 -6.8336 -0.7844 40 1 2.0789 -6.1349 -2.2434 41 1 3.2810 -4.9698 -1.6395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155661025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:53 Heat of formation + Delta-G solvation = 68.550517 kcal Electronic energy + Delta-G solvation = -23219.596948 eV Core-core repulsion = 19750.854490 eV Total energy + Delta-G solvation = -3468.742458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.45177 -39.36323 -37.82583 -35.57590 -33.89765 -32.88369 -31.32954 -31.20124 -30.61842 -28.74433 -26.36552 -24.37321 -23.31639 -22.75181 -22.50330 -21.29045 -19.79008 -19.16083 -17.86470 -17.72994 -16.68534 -15.97234 -15.40980 -15.26693 -14.97844 -14.72493 -14.60965 -14.31095 -14.01128 -13.83568 -13.61254 -13.10850 -12.99982 -12.45818 -12.35553 -12.04036 -11.58434 -11.53163 -11.41693 -11.13722 -11.05883 -11.04624 -10.94673 -10.52128 -10.44511 -10.29912 -10.21219 -10.09322 -9.58757 -9.45461 -8.41819 -7.96428 -7.83278 -6.40968 -3.81856 1.39638 2.12821 2.38594 3.19868 3.25613 3.29742 3.92346 4.00393 4.08269 4.23792 4.29130 4.35254 4.68248 4.74490 4.90112 4.98791 5.01735 5.10426 5.24479 5.30013 5.34248 5.47067 5.52982 5.60258 5.66562 5.78276 5.83415 5.87576 5.92363 6.03157 6.11220 6.18812 6.29047 6.36034 6.41436 6.47744 7.31874 7.45041 7.55348 8.07114 8.32434 8.62982 9.18789 9.55785 10.07735 10.76788 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.051877 B = 0.002622 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.608320 B =10675.193893 C =10992.926475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.057 3.943 15 C -0.117 4.117 16 C -0.100 4.100 17 C 0.116 3.884 18 N -0.284 5.284 19 C -0.055 4.055 20 C -0.056 4.056 21 N -0.279 5.279 22 N -0.076 5.076 23 C -0.104 4.104 24 C 0.058 3.942 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -20.363 -6.336 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.461 6.461 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.119 4.119 17 C -0.004 4.004 18 N -0.078 5.078 19 C -0.206 4.206 20 C -0.213 4.213 21 N -0.144 5.144 22 N -0.056 5.056 23 C -0.142 4.142 24 C -0.070 4.070 25 H 0.082 0.918 26 H 0.225 0.775 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.205 0.795 37 H 0.204 0.796 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.040 0.960 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.708 -19.702 -4.685 21.040 hybrid contribution -0.270 0.523 -1.750 1.846 sum 5.438 -19.179 -6.435 20.948 Atomic orbital electron populations 1.69603 1.05933 1.28233 1.50616 1.25257 0.95627 0.99702 0.97390 0.85925 0.78759 0.80526 0.79042 1.19952 1.21003 1.19895 1.19638 0.93296 0.82236 1.47657 0.87997 1.41886 1.09197 1.04613 1.64544 1.19759 0.88428 0.84517 0.84362 1.90493 1.13645 1.86967 1.55022 1.21848 0.93736 0.91299 1.01666 1.61514 1.31113 1.01071 1.30213 1.22088 0.95153 0.89117 1.00761 1.21858 0.98962 0.99031 0.95688 1.21554 0.96430 0.94010 0.99923 1.22396 0.96205 0.76745 1.05078 1.47627 1.30879 1.12490 1.16811 1.23712 1.07334 0.88734 1.00789 1.23612 1.00185 1.01431 0.96102 1.75153 1.20956 1.02250 1.16072 1.78267 1.07248 1.08204 1.11918 1.21544 0.98850 0.91885 1.01921 1.22121 0.95678 1.00878 0.88347 0.91839 0.77513 0.89273 0.93712 0.90600 0.95573 0.89248 0.90794 0.90902 0.87559 0.87837 0.79471 0.79589 0.91531 0.90165 0.96049 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.57 -14.32 5.29 -10.96 -0.06 -14.37 16 10 C 0.44 10.41 7.31 -10.99 -0.08 10.33 16 11 O -0.58 -15.31 14.29 5.55 0.08 -15.23 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 N -0.51 -8.51 4.35 -236.12 -1.03 -9.53 16 14 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 15 C -0.12 -1.40 5.01 -26.65 -0.13 -1.53 16 16 C -0.10 -0.99 2.45 -90.50 -0.22 -1.21 16 17 C 0.12 0.87 5.93 -4.04 -0.02 0.84 16 18 N -0.28 -2.69 3.44 -61.26 -0.21 -2.90 16 19 C -0.05 -0.40 11.57 -17.05 -0.20 -0.60 16 20 C -0.06 -0.50 12.05 -17.74 -0.21 -0.71 16 21 N -0.28 -3.56 12.41 30.24 0.38 -3.18 16 22 N -0.08 -0.96 10.31 60.35 0.62 -0.34 16 23 C -0.10 -1.18 5.38 -26.65 -0.14 -1.32 16 24 C 0.06 0.89 5.12 -3.83 -0.02 0.87 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 27 H 0.09 1.48 7.98 -51.93 -0.41 1.07 16 28 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 29 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.12 5.67 -51.93 -0.29 0.82 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.11 0.47 8.07 -51.93 -0.42 0.06 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 1.89 6.06 -51.93 -0.31 1.58 16 LS Contribution 335.29 15.07 5.05 5.05 Total: -1.00 -33.34 335.29 -6.70 -40.04 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.92 Total: 8.06 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.43 Total: -54.19 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.34 -6.70 -40.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155661025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.592 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds