Wall clock time and date at job start Fri Apr 10 2020 17:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48501 * 109.47329 * 240.00261 * 3 2 1 5 5 H 1.48499 * 109.46879 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46866 * 120.00092 * 3 2 1 7 7 C 1.38946 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00284 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99759 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47237 * 173.73332 * 12 10 9 14 14 C 1.46845 * 111.00126 * 169.39888 * 13 12 10 15 15 C 1.53042 * 109.51991 * 185.83890 * 14 13 12 16 16 C 1.53108 * 109.28196 * 300.82034 * 15 14 13 17 17 C 1.53002 * 109.52692 * 177.56315 * 16 15 14 18 18 N 1.46500 * 109.47007 * 65.31572 * 17 16 15 19 19 C 1.35309 * 125.86482 * 125.00384 * 18 17 16 20 20 C 1.35355 * 106.17240 * 179.97438 * 19 18 17 21 21 N 1.33767 * 106.49836 * 0.02562 * 20 19 18 22 22 N 1.28638 * 108.88370 * 359.72939 * 21 20 19 23 23 C 1.53127 * 109.16238 * 57.65720 * 16 15 14 24 24 C 1.46852 * 111.00118 * 293.61170 * 13 12 10 25 25 H 0.97002 * 120.00090 * 359.97438 * 1 2 3 26 26 H 0.96992 * 119.99644 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.46989 * 293.73073 * 12 10 9 28 28 H 1.08994 * 109.47105 * 53.73252 * 12 10 9 29 29 H 1.08998 * 109.46555 * 305.85433 * 14 13 12 30 30 H 1.08993 * 109.45955 * 65.82786 * 14 13 12 31 31 H 1.09005 * 109.49799 * 180.87612 * 15 14 13 32 32 H 1.09001 * 109.50127 * 60.76638 * 15 14 13 33 33 H 1.09003 * 109.52716 * 297.75527 * 16 15 14 34 34 H 1.09001 * 109.47545 * 185.32319 * 17 16 15 35 35 H 1.09001 * 109.46490 * 305.31875 * 17 16 15 36 36 H 1.07998 * 126.91360 * 359.97438 * 19 18 17 37 37 H 1.08001 * 126.74841 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.50293 * 182.40848 * 23 16 15 39 39 H 1.08998 * 109.50093 * 62.28250 * 23 16 15 40 40 H 1.08992 * 109.46257 * 294.17720 * 24 13 12 41 41 H 1.09001 * 109.46118 * 54.14126 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1911 -5.9754 -0.1522 14 6 1.5323 -7.2647 0.0928 15 6 2.5754 -8.3843 0.0706 16 6 3.2738 -8.3976 -1.2918 17 6 4.3598 -9.4754 -1.2993 18 7 3.7378 -10.7962 -1.1777 19 6 3.9093 -11.8345 -2.0282 20 6 3.1574 -12.8491 -1.5409 21 7 2.5700 -12.3876 -0.4313 22 7 2.9385 -11.1700 -0.2406 23 6 3.9105 -7.0280 -1.5437 24 6 2.8287 -5.9477 -1.4748 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.7035 -4.9710 0.9394 28 1 0.5359 -4.8734 -0.8299 29 1 1.0431 -7.2433 1.0667 30 1 0.7886 -7.4457 -0.6831 31 1 2.0839 -9.3429 0.2371 32 1 3.3118 -8.2112 0.8554 33 1 2.5440 -8.6093 -2.0733 34 1 4.9188 -9.4216 -2.2335 35 1 5.0373 -9.3142 -0.4608 36 1 4.5227 -11.8506 -2.9169 37 1 3.0517 -13.8366 -1.9652 38 1 4.3727 -7.0175 -2.5307 39 1 4.6679 -6.8336 -0.7844 40 1 2.0789 -6.1349 -2.2434 41 1 3.2810 -4.9698 -1.6395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155661025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:52 Heat of formation + Delta-G solvation = 43.777249 kcal Electronic energy + Delta-G solvation = -23220.671198 eV Core-core repulsion = 19750.854490 eV Total energy + Delta-G solvation = -3469.816707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.12366 -40.71464 -39.39750 -36.60148 -35.83209 -33.89955 -33.22407 -32.05073 -31.59456 -29.87876 -27.73325 -26.04582 -24.28359 -23.78980 -23.27292 -22.06625 -21.03150 -20.75698 -19.87161 -18.38648 -17.78670 -17.39258 -16.69095 -16.46512 -16.32320 -15.86476 -15.66102 -15.44160 -15.33614 -15.10758 -14.95910 -14.22908 -14.13187 -13.85604 -13.48885 -13.28568 -13.12440 -12.95774 -12.66203 -12.47710 -12.42931 -12.13733 -12.10814 -11.97348 -11.83417 -11.52485 -11.37600 -11.24765 -10.91740 -10.27067 -10.22397 -9.99845 -9.19461 -8.45896 -5.94753 0.76497 1.39799 1.41451 1.52519 1.55025 1.71002 2.05900 2.28440 2.76671 3.20789 3.38413 3.47170 3.62206 3.72192 3.86066 4.07102 4.21441 4.27443 4.30085 4.33901 4.38819 4.41292 4.47670 4.49827 4.55706 4.61471 4.77052 4.84194 4.88524 5.02756 5.05005 5.15395 5.21637 5.39777 5.41059 5.44921 5.79080 5.90475 6.10573 6.25686 6.61172 7.13240 7.57021 7.62531 8.12542 8.71451 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.051877 B = 0.002622 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.608320 B =10675.193893 C =10992.926475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.080 0.920 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.611 6.611 12 C 0.056 3.944 13 N -0.531 5.531 14 C 0.058 3.942 15 C -0.112 4.112 16 C -0.089 4.089 17 C 0.117 3.883 18 N -0.286 5.286 19 C -0.036 4.036 20 C -0.070 4.070 21 N -0.321 5.321 22 N -0.119 5.119 23 C -0.094 4.094 24 C 0.055 3.945 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.234 0.766 37 H 0.214 0.786 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.194 -21.475 -7.894 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.496 6.496 12 C -0.075 4.075 13 N -0.256 5.256 14 C -0.069 4.069 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.003 4.003 18 N -0.080 5.080 19 C -0.187 4.187 20 C -0.228 4.228 21 N -0.186 5.186 22 N -0.099 5.099 23 C -0.132 4.132 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.251 0.749 37 H 0.230 0.770 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.048 0.952 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.500 -20.828 -6.228 22.691 hybrid contribution -0.507 0.795 -1.302 1.608 sum 5.993 -20.033 -7.530 22.225 Atomic orbital electron populations 1.69673 1.06894 1.29317 1.50485 1.26057 0.96544 1.02475 0.96376 0.84982 0.77737 0.76595 0.78991 1.19536 1.19612 1.19735 1.19624 0.92692 0.83916 1.49825 0.90182 1.41964 1.09278 1.04773 1.65390 1.20689 0.88318 0.85734 0.82167 1.90465 1.15463 1.87764 1.55953 1.21725 0.93578 0.89052 1.03190 1.61515 1.31260 1.01686 1.31186 1.22140 0.95735 0.88044 1.00990 1.21788 0.98362 0.97921 0.96925 1.21382 0.97016 0.94064 0.98367 1.22511 0.95128 0.75174 1.07438 1.47799 1.30295 1.13328 1.16562 1.24440 1.06149 0.87224 1.00929 1.24227 1.00092 1.03148 0.95342 1.75088 1.22476 1.02882 1.18153 1.78215 1.09323 1.08589 1.13727 1.21459 0.97228 0.91277 1.03270 1.22097 0.96802 1.00316 0.88055 0.91350 0.77173 0.87670 0.92047 0.90527 0.94890 0.89546 0.91877 0.90781 0.83428 0.87599 0.74935 0.76964 0.88611 0.91291 0.95203 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 2 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -29.96 5.29 -306.98 -1.62 -31.58 16 10 C 0.44 21.34 7.31 87.66 0.64 21.99 16 11 O -0.61 -33.52 14.29 -3.07 -0.04 -33.56 16 12 C 0.06 2.02 5.45 85.56 0.47 2.48 16 13 N -0.53 -17.46 4.35 -900.96 -3.92 -21.38 16 14 C 0.06 1.54 5.46 86.33 0.47 2.01 16 15 C -0.11 -2.58 5.01 30.64 0.15 -2.42 16 16 C -0.09 -1.56 2.45 -10.71 -0.03 -1.59 16 17 C 0.12 1.37 5.93 86.38 0.51 1.88 16 18 N -0.29 -4.66 3.44 -347.73 -1.20 -5.86 16 19 C -0.04 -0.40 11.57 83.49 0.97 0.57 16 20 C -0.07 -1.09 12.05 83.73 1.01 -0.08 16 21 N -0.32 -7.98 12.41 -58.26 -0.72 -8.70 16 22 N -0.12 -2.89 10.31 37.02 0.38 -2.51 16 23 C -0.09 -1.97 5.38 30.65 0.16 -1.81 16 24 C 0.06 1.68 5.12 86.32 0.44 2.12 16 25 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.39 19.64 7.90 -92.71 -0.73 18.90 16 27 H 0.11 3.45 7.98 -2.39 -0.02 3.43 16 28 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 29 H 0.08 1.98 8.01 -2.39 -0.02 1.96 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 2.12 5.67 -2.38 -0.01 2.11 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.15 0.54 8.07 -2.39 -0.02 0.52 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 2.31 6.06 -2.39 -0.01 2.29 16 Total: -1.00 -75.43 335.29 1.58 -73.85 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.31 Total: 27.96 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 6.08 Total: 6.75 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.79 Total: -120.04 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.04 Total: -33.56 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.43 1.58 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155661025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.623 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds