Wall clock time and date at job start Fri Apr 10 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 C 1.46507 * 120.00030 * 270.00480 * 3 2 1 5 5 C 1.50705 * 109.46821 * 269.99613 * 4 3 2 6 6 H 1.08001 * 119.99539 * 0.02562 * 5 4 3 7 7 C 1.37867 * 120.00060 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00067 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46915 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47181 * 119.99925 * 9 7 5 12 12 H 1.48501 * 109.47288 * 239.99789 * 9 7 5 13 13 C 1.34777 * 120.00212 * 89.99897 * 3 2 1 14 14 O 1.21286 * 120.00114 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99760 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.46947 * 180.02562 * 15 13 3 17 17 C 1.35868 * 119.93974 * 90.00173 * 16 15 13 18 18 C 1.50706 * 120.40172 * 0.02562 * 17 16 15 19 19 C 1.36021 * 119.19317 * 180.29558 * 17 16 15 20 20 C 1.39804 * 119.08121 * 359.46558 * 19 17 16 21 21 C 1.50700 * 120.08809 * 180.24547 * 20 19 17 22 22 N 1.31763 * 119.83267 * 0.54153 * 20 19 17 23 23 C 1.33528 * 120.81227 * 359.72591 * 22 20 19 24 24 O 1.21948 * 119.52162 * 180.02562 * 23 22 20 25 25 H 1.08999 * 109.47331 * 299.99579 * 1 2 3 26 26 H 1.08998 * 109.47271 * 60.00443 * 1 2 3 27 27 H 1.09005 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47331 * 240.00421 * 2 1 3 29 29 H 1.08998 * 109.47271 * 119.99557 * 2 1 3 30 30 H 1.09001 * 109.47131 * 29.99474 * 4 3 2 31 31 H 1.09000 * 109.47418 * 149.99717 * 4 3 2 32 32 H 0.97002 * 120.00576 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47345 * 60.00232 * 15 13 3 34 34 H 1.08998 * 109.47270 * 299.99852 * 15 13 3 35 35 H 1.09001 * 109.46953 * 90.00007 * 18 17 16 36 36 H 1.09000 * 109.47318 * 209.99605 * 18 17 16 37 37 H 1.09000 * 109.47161 * 330.00236 * 18 17 16 38 38 H 1.07998 * 120.45790 * 179.70088 * 19 17 16 39 39 H 1.08996 * 109.47654 * 180.28778 * 21 20 19 40 40 H 1.09002 * 109.47216 * 300.29140 * 21 20 19 41 41 H 1.09009 * 109.46826 * 60.28866 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3897 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9129 2.0957 -3.4176 10 1 6.6007 1.2408 -2.4170 11 1 5.9200 1.4165 -4.7382 12 1 6.6207 3.3967 -3.5264 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3089 2.2039 3.5858 17 6 1.3451 3.0110 4.1012 18 6 -0.0513 2.9891 3.5347 19 6 1.6573 3.8430 5.1309 20 6 2.9598 3.8367 5.6387 21 6 3.3291 4.7453 6.7829 22 7 3.8654 3.0386 5.1105 23 6 3.5544 2.2279 4.0960 24 8 4.4109 1.4986 3.6253 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5815 1.6877 -2.0284 31 1 2.0953 3.1411 -1.1385 32 1 3.6746 3.5155 -4.4445 33 1 2.6228 0.4188 2.5299 34 1 0.9444 1.0115 2.5302 35 1 -0.6474 2.2473 4.0663 36 1 -0.5064 3.9726 3.6519 37 1 -0.0101 2.7314 2.4764 38 1 0.9083 4.4967 5.5530 39 1 4.3800 4.6037 7.0348 40 1 3.1616 5.7823 6.4921 41 1 2.7124 4.5069 7.6497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274246787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:41 Heat of formation + Delta-G solvation = -22.697333 kcal Electronic energy + Delta-G solvation = -24250.393528 eV Core-core repulsion = 20745.401515 eV Total energy + Delta-G solvation = -3504.992013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82826 -39.12683 -37.22129 -36.14868 -35.36725 -32.86686 -32.24948 -30.67735 -30.23434 -28.97496 -27.61623 -26.21901 -23.21363 -23.07744 -22.79525 -21.72822 -18.89993 -18.40308 -17.41185 -16.92127 -16.43431 -16.00717 -15.61700 -15.26941 -14.76497 -14.33278 -14.01252 -13.82970 -13.77213 -13.63039 -13.55925 -13.34061 -13.10143 -12.68563 -12.55864 -12.21695 -12.13004 -11.97721 -11.73944 -11.36338 -11.26082 -10.95718 -10.82179 -10.72541 -10.62414 -10.58792 -10.15091 -9.65180 -9.51915 -9.17279 -8.45171 -8.32286 -7.81597 -6.06599 -4.10811 0.63904 1.70840 2.39722 3.12124 3.31265 3.39481 3.46217 3.66953 3.93521 4.05833 4.13788 4.45537 4.52284 4.69712 4.81496 5.00019 5.05748 5.07693 5.12432 5.24296 5.28722 5.34626 5.37169 5.45264 5.47579 5.50881 5.61423 5.76631 5.84258 5.91586 6.11305 6.26415 6.33924 6.54110 6.93139 7.33160 7.43192 7.90005 7.94531 8.18961 8.22373 8.32220 8.77681 8.96559 9.54841 11.01625 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.004776 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.324840 B = 5861.554380 C = 6685.038583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.495 3.505 14 O -0.527 6.527 15 C 0.066 3.934 16 N -0.494 5.494 17 C 0.228 3.772 18 C -0.133 4.133 19 C -0.302 4.302 20 C 0.268 3.732 21 C -0.115 4.115 22 N -0.553 5.553 23 C 0.637 3.363 24 O -0.527 6.527 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.155 0.845 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.809 -1.982 17.833 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.279 3.721 14 O -0.404 6.404 15 C -0.061 4.061 16 N -0.208 5.208 17 C 0.108 3.892 18 C -0.190 4.190 19 C -0.328 4.328 20 C 0.106 3.894 21 C -0.172 4.172 22 N -0.287 5.287 23 C 0.340 3.660 24 O -0.401 6.401 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.054 -2.042 17.372 20.692 hybrid contribution 0.144 -0.133 -0.846 0.869 sum -10.909 -2.175 16.526 19.921 Atomic orbital electron populations 1.22232 0.96496 1.01745 1.02244 1.21521 0.93613 0.84029 1.03258 1.48246 1.63280 1.13273 1.07382 1.19327 0.96588 0.93526 0.77649 1.21481 0.96849 1.31999 1.06270 0.92287 1.24912 0.97948 0.94798 0.96314 1.69935 1.35634 1.33562 1.14356 0.86440 0.84572 0.78207 0.78282 1.19650 1.20888 1.20820 1.20193 0.79603 0.87301 0.84975 1.90729 1.45046 1.17891 1.86703 1.22046 1.04097 0.94467 0.85451 1.46112 1.11526 1.34128 1.29029 1.21127 0.91529 0.86441 0.90074 1.21221 0.89831 1.05533 1.02435 1.21110 0.99347 1.08241 1.04078 1.22140 0.88642 0.87869 0.90710 1.20920 1.04138 0.97809 0.94332 1.69791 1.33676 1.11934 1.13309 1.18090 0.80454 0.84599 0.82870 1.91003 1.45261 1.42663 1.61153 0.93378 0.91711 0.91781 0.89309 0.91707 0.94658 0.93909 0.92763 0.85525 0.86679 0.88522 0.88142 0.89730 0.82743 0.89749 0.89161 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 37.15 0.38 -1.55 16 2 C 0.10 1.51 5.93 -4.05 -0.02 1.48 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -15.35 9.39 -34.44 -0.32 -15.67 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.73 29.54 -169.99 -5.02 17.71 16 10 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 13 C 0.50 10.35 7.28 -10.99 -0.08 10.27 16 14 O -0.53 -13.66 16.01 5.55 0.09 -13.57 16 15 C 0.07 1.03 3.75 -5.19 -0.02 1.01 16 16 N -0.49 -8.15 2.08 -118.41 -0.25 -8.40 16 17 C 0.23 2.80 6.68 -81.60 -0.55 2.26 16 18 C -0.13 -1.07 9.14 36.01 0.33 -0.74 16 19 C -0.30 -3.23 9.44 -39.79 -0.38 -3.61 16 20 C 0.27 3.45 6.84 -82.04 -0.56 2.89 16 21 C -0.11 -0.92 10.19 36.01 0.37 -0.56 16 22 N -0.55 -10.06 10.39 -12.80 -0.13 -10.19 16 23 C 0.64 13.03 8.34 -88.17 -0.74 12.29 16 24 O -0.53 -12.89 16.74 4.97 0.08 -12.81 16 25 H 0.05 0.47 7.22 -51.93 -0.38 0.09 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 29 H 0.06 0.82 6.44 -51.93 -0.33 0.49 16 30 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.13 1.99 6.65 -51.93 -0.35 1.65 16 34 H 0.12 1.21 5.62 -51.93 -0.29 0.92 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.08 0.83 6.31 -51.93 -0.33 0.50 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -40.75 346.54 -7.23 -47.98 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.82 Total: -3.43 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: -1.71 Total: 16.20 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.07 Total: -57.30 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.17 Total: -26.38 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -40.75 -7.23 -47.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274246787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.286 kcal (2) G-P(sol) polarization free energy of solvation -40.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds