Wall clock time and date at job start Fri Apr 10 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47042 * 2 1 4 4 C 1.46507 * 120.00030 * 270.00480 * 3 2 1 5 5 C 1.50705 * 109.46821 * 269.99613 * 4 3 2 6 6 H 1.08001 * 119.99539 * 0.02562 * 5 4 3 7 7 C 1.37867 * 120.00060 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00067 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00150 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46915 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47181 * 119.99925 * 9 7 5 12 12 H 1.48501 * 109.47288 * 239.99789 * 9 7 5 13 13 C 1.34777 * 120.00212 * 89.99897 * 3 2 1 14 14 O 1.21286 * 120.00114 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99760 * 0.02562 * 13 3 2 16 16 N 1.46501 * 109.46947 * 180.02562 * 15 13 3 17 17 C 1.35868 * 119.93974 * 90.00173 * 16 15 13 18 18 C 1.50706 * 120.40172 * 0.02562 * 17 16 15 19 19 C 1.36021 * 119.19317 * 180.29558 * 17 16 15 20 20 C 1.39804 * 119.08121 * 359.46558 * 19 17 16 21 21 C 1.50700 * 120.08809 * 180.24547 * 20 19 17 22 22 N 1.31763 * 119.83267 * 0.54153 * 20 19 17 23 23 C 1.33528 * 120.81227 * 359.72591 * 22 20 19 24 24 O 1.21948 * 119.52162 * 180.02562 * 23 22 20 25 25 H 1.08999 * 109.47331 * 299.99579 * 1 2 3 26 26 H 1.08998 * 109.47271 * 60.00443 * 1 2 3 27 27 H 1.09005 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47331 * 240.00421 * 2 1 3 29 29 H 1.08998 * 109.47271 * 119.99557 * 2 1 3 30 30 H 1.09001 * 109.47131 * 29.99474 * 4 3 2 31 31 H 1.09000 * 109.47418 * 149.99717 * 4 3 2 32 32 H 0.97002 * 120.00576 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47345 * 60.00232 * 15 13 3 34 34 H 1.08998 * 109.47270 * 299.99852 * 15 13 3 35 35 H 1.09001 * 109.46953 * 90.00007 * 18 17 16 36 36 H 1.09000 * 109.47318 * 209.99605 * 18 17 16 37 37 H 1.09000 * 109.47161 * 330.00236 * 18 17 16 38 38 H 1.07998 * 120.45790 * 179.70088 * 19 17 16 39 39 H 1.08996 * 109.47654 * 180.28778 * 21 20 19 40 40 H 1.09002 * 109.47216 * 300.29140 * 21 20 19 41 41 H 1.09009 * 109.46826 * 60.28866 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3425 1.2304 -1.0962 7 6 4.1489 2.3897 -2.8780 8 7 3.3486 3.1250 -3.6186 9 14 5.9129 2.0957 -3.4176 10 1 6.6007 1.2408 -2.4170 11 1 5.9200 1.4165 -4.7382 12 1 6.6207 3.3967 -3.5264 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3089 2.2039 3.5858 17 6 1.3451 3.0110 4.1012 18 6 -0.0513 2.9891 3.5347 19 6 1.6573 3.8430 5.1309 20 6 2.9598 3.8367 5.6387 21 6 3.3291 4.7453 6.7829 22 7 3.8654 3.0386 5.1105 23 6 3.5544 2.2279 4.0960 24 8 4.4109 1.4986 3.6253 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.5815 1.6877 -2.0284 31 1 2.0953 3.1411 -1.1385 32 1 3.6746 3.5155 -4.4445 33 1 2.6228 0.4188 2.5299 34 1 0.9444 1.0115 2.5302 35 1 -0.6474 2.2473 4.0663 36 1 -0.5064 3.9726 3.6519 37 1 -0.0101 2.7314 2.4764 38 1 0.9083 4.4967 5.5530 39 1 4.3800 4.6037 7.0348 40 1 3.1616 5.7823 6.4921 41 1 2.7124 4.5069 7.6497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274246787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:41 Heat of formation + Delta-G solvation = -54.021654 kcal Electronic energy + Delta-G solvation = -24251.751852 eV Core-core repulsion = 20745.401515 eV Total energy + Delta-G solvation = -3506.350337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03034 -40.72476 -38.56047 -37.40678 -36.92055 -35.00088 -33.33088 -31.88521 -31.51568 -30.16551 -28.95423 -27.63107 -25.01950 -24.30600 -24.10032 -22.82819 -20.43959 -19.52495 -18.81569 -18.61910 -18.27201 -17.30388 -17.09321 -16.84726 -16.42603 -15.97909 -15.07206 -14.95835 -14.85086 -14.63586 -14.53746 -14.50190 -14.20674 -14.08503 -13.68776 -13.51989 -13.31200 -13.21037 -13.07696 -12.97704 -12.76688 -12.58147 -12.44185 -12.24431 -12.03587 -11.92731 -11.80167 -11.76611 -10.81103 -10.72292 -10.69786 -9.59870 -9.50988 -8.31288 -6.44815 -0.38273 0.63027 1.21724 1.27632 1.31007 1.42411 1.53966 2.16231 2.33072 2.69609 2.98429 3.15321 3.24027 3.39096 3.58972 3.69161 3.90523 4.12405 4.24754 4.36496 4.37180 4.45795 4.58218 4.60621 4.64327 4.82716 4.86784 4.89377 4.95180 4.97108 5.02655 5.13308 5.18472 5.39014 5.42824 5.48409 5.49001 5.74135 5.98371 6.53782 6.64798 6.69822 7.07356 7.14387 7.29588 8.75758 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.004776 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.324840 B = 5861.554380 C = 6685.038583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.089 3.911 3 N -0.593 5.593 4 C 0.266 3.734 5 C -0.549 4.549 6 H 0.041 0.959 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.260 1.260 12 H -0.280 1.280 13 C 0.488 3.512 14 O -0.590 6.590 15 C 0.080 3.920 16 N -0.500 5.500 17 C 0.209 3.791 18 C -0.130 4.130 19 C -0.287 4.287 20 C 0.261 3.739 21 C -0.112 4.112 22 N -0.606 5.606 23 C 0.622 3.378 24 O -0.599 6.599 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.000 1.000 32 H 0.269 0.731 33 H 0.123 0.877 34 H 0.174 0.826 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.065 0.935 38 H 0.209 0.791 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 -2.106 19.761 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.033 4.033 3 N -0.324 5.324 4 C 0.145 3.855 5 C -0.587 4.587 6 H 0.059 0.941 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.184 1.184 12 H -0.206 1.206 13 C 0.275 3.725 14 O -0.471 6.471 15 C -0.046 4.046 16 N -0.214 5.214 17 C 0.092 3.908 18 C -0.186 4.186 19 C -0.311 4.311 20 C 0.105 3.895 21 C -0.168 4.168 22 N -0.344 5.344 23 C 0.325 3.675 24 O -0.479 6.479 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.191 0.809 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.967 -2.163 19.338 23.952 hybrid contribution 0.917 0.014 -1.355 1.636 sum -13.050 -2.150 17.983 22.323 Atomic orbital electron populations 1.22163 0.92943 1.04100 1.02477 1.21916 0.96500 0.80796 1.04049 1.48248 1.63144 1.15210 1.05806 1.18736 0.95030 0.91661 0.80117 1.21715 0.98257 1.32219 1.06552 0.94099 1.25718 1.01998 0.94415 0.96336 1.70014 1.37352 1.33946 1.14771 0.85496 0.79493 0.78084 0.78528 1.20314 1.18420 1.20597 1.21110 0.78061 0.86769 0.86573 1.90682 1.47746 1.20819 1.87807 1.22048 1.07240 0.93144 0.82135 1.46011 1.11431 1.35033 1.28907 1.22107 0.92622 0.85627 0.90442 1.21438 0.87388 1.08442 1.01369 1.21770 0.99326 1.07313 1.02689 1.23085 0.89046 0.86534 0.90883 1.21125 1.04084 0.97843 0.93768 1.69740 1.36074 1.14138 1.14431 1.18422 0.81097 0.84544 0.83418 1.90915 1.47547 1.45737 1.63659 0.90992 0.93675 0.88257 0.90753 0.88812 0.94789 0.98193 0.92198 0.85929 0.80882 0.84308 0.85553 0.91568 0.77399 0.91196 0.86712 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 10.24 71.98 0.74 -2.46 16 2 C 0.09 2.62 5.93 86.38 0.51 3.13 16 3 N -0.59 -25.21 2.46 -826.14 -2.03 -27.24 16 4 C 0.27 14.48 5.16 85.63 0.44 14.92 16 5 C -0.55 -33.39 9.39 25.60 0.24 -33.15 16 6 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.02 0.90 5.46 84.65 0.46 1.36 16 8 N -0.92 -56.50 13.29 21.44 0.28 -56.22 16 9 Si 0.96 47.68 29.54 68.60 2.03 49.71 16 10 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 C 0.49 20.99 7.28 87.66 0.64 21.62 16 14 O -0.59 -32.20 16.01 -3.05 -0.05 -32.25 16 15 C 0.08 2.44 3.75 85.63 0.32 2.76 16 16 N -0.50 -16.38 2.08 -646.73 -1.34 -17.73 16 17 C 0.21 4.59 6.68 41.42 0.28 4.87 16 18 C -0.13 -1.49 9.14 71.24 0.65 -0.84 16 19 C -0.29 -5.11 9.44 22.13 0.21 -4.90 16 20 C 0.26 6.31 6.84 42.95 0.29 6.60 16 21 C -0.11 -1.47 10.19 71.24 0.73 -0.75 16 22 N -0.61 -22.74 10.39 -313.21 -3.26 -26.00 16 23 C 0.62 26.59 8.34 179.49 1.50 28.09 16 24 O -0.60 -31.50 16.74 -5.15 -0.09 -31.59 16 25 H 0.07 1.11 7.22 -2.39 -0.02 1.09 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 29 H 0.09 2.21 6.44 -2.39 -0.02 2.20 16 30 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 31 H 0.00 0.00 7.42 -2.39 -0.02 -0.02 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.12 3.88 6.65 -2.39 -0.02 3.86 16 34 H 0.17 3.04 5.62 -2.39 -0.01 3.03 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.13 0.85 8.09 -2.39 -0.02 0.83 16 37 H 0.07 1.07 6.31 -2.39 -0.02 1.06 16 38 H 0.21 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -100.74 346.54 3.59 -97.15 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.04 Total: 2.90 kcal Atomic # 6 Polarization: 34.26 SS G_CDS: 7.01 Total: 41.26 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.34 Total: -127.18 kcal Atomic # 8 Polarization: -63.70 SS G_CDS: -0.13 Total: -63.83 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -100.74 3.59 -97.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274246787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.130 kcal (2) G-P(sol) polarization free energy of solvation -100.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds