Wall clock time and date at job start Fri Apr 10 2020 17:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47034 * 2 1 4 4 C 1.46497 * 120.00181 * 89.89690 * 3 2 1 5 5 C 1.50704 * 109.46875 * 89.99899 * 4 3 2 6 6 H 1.07996 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99875 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99782 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47054 * 60.00265 * 9 7 5 11 11 H 1.48503 * 109.46910 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47277 * 300.00030 * 9 7 5 13 13 C 1.34771 * 119.99853 * 269.89775 * 3 2 1 14 14 O 1.21613 * 120.00255 * 185.40543 * 13 3 2 15 15 C 1.47414 * 120.00344 * 5.40631 * 13 3 2 16 16 C 1.39314 * 121.30096 * 280.71355 * 15 13 3 17 17 C 1.50701 * 120.98978 * 0.02562 * 16 15 13 18 18 C 1.40036 * 118.01985 * 179.80859 * 16 15 13 19 19 C 1.50705 * 119.70207 * 180.19242 * 18 16 15 20 20 N 1.30521 * 120.59422 * 0.47418 * 18 16 15 21 21 N 1.28270 * 122.98480 * 359.73978 * 20 18 16 22 22 C 1.46492 * 119.03346 * 180.02562 * 21 20 18 23 23 C 1.34686 * 121.93486 * 0.03124 * 21 20 18 24 24 O 1.21907 * 120.46814 * 179.97438 * 23 21 20 25 25 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47386 * 300.00049 * 1 2 3 27 27 H 1.09003 * 109.46978 * 60.00528 * 1 2 3 28 28 H 1.09003 * 109.47818 * 239.99902 * 2 1 3 29 29 H 1.09005 * 109.47464 * 119.99620 * 2 1 3 30 30 H 1.08993 * 109.47679 * 209.99864 * 4 3 2 31 31 H 1.08998 * 109.47095 * 330.00504 * 4 3 2 32 32 H 0.96996 * 119.99464 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47127 * 85.73616 * 17 16 15 34 34 H 1.09001 * 109.47258 * 205.74173 * 17 16 15 35 35 H 1.09007 * 109.47311 * 325.73809 * 17 16 15 36 36 H 1.09004 * 109.46813 * 180.27241 * 19 18 16 37 37 H 1.08997 * 109.47255 * 300.27387 * 19 18 16 38 38 H 1.09002 * 109.46799 * 60.27861 * 19 18 16 39 39 H 1.09000 * 109.46788 * 270.02388 * 22 21 20 40 40 H 1.08998 * 109.47328 * 30.01915 * 22 21 20 41 41 H 1.09000 * 109.47648 * 150.02561 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2603 2.0727 1.2687 5 6 3.6829 1.8361 1.7062 6 1 4.3410 1.2316 1.0997 7 6 4.1446 2.3923 2.8804 8 7 3.3433 3.1289 3.6187 9 14 5.9081 2.0997 3.4224 10 1 6.8369 2.6223 2.3884 11 1 6.1534 2.8005 4.7085 12 1 6.1357 0.6432 3.6016 13 6 2.2449 2.0159 -1.1672 14 8 2.7424 3.1256 -1.1694 15 6 1.8896 1.3650 -2.4412 16 6 2.7075 0.3905 -3.0089 17 6 3.9883 -0.0345 -2.3382 18 6 2.3017 -0.1856 -4.2190 19 6 3.1556 -1.2466 -4.8644 20 7 1.1933 0.1918 -4.7958 21 7 0.4199 1.0886 -4.3029 22 6 -0.8044 1.4457 -5.0236 23 6 0.7005 1.7117 -3.1423 24 8 -0.0535 2.5606 -2.6984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0936 3.1418 1.1375 31 1 1.5783 1.6890 2.0274 32 1 3.6680 3.5198 4.4449 33 1 3.7743 -0.8139 -1.6070 34 1 4.6805 -0.4191 -3.0872 35 1 4.4368 0.8223 -1.8351 36 1 2.6888 -1.5730 -5.7938 37 1 4.1433 -0.8380 -5.0777 38 1 3.2520 -2.0962 -4.1883 39 1 -0.5936 2.2601 -5.7167 40 1 -1.1646 0.5799 -5.5793 41 1 -1.5661 1.7629 -4.3113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330535070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:15 Heat of formation + Delta-G solvation = -6.295458 kcal Electronic energy + Delta-G solvation = -24731.130340 eV Core-core repulsion = 21226.849566 eV Total energy + Delta-G solvation = -3504.280774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.09013 -39.03815 -37.93238 -35.81672 -35.27809 -32.88500 -32.25990 -30.63938 -30.09416 -28.20228 -27.34878 -26.27948 -24.56670 -23.03611 -22.37609 -22.19315 -19.29578 -18.20489 -17.24164 -16.85791 -16.42999 -16.20207 -15.69130 -15.47709 -14.40147 -14.21343 -14.04348 -13.90702 -13.51617 -13.40213 -13.22459 -13.01234 -12.89415 -12.80587 -12.68619 -12.15312 -12.13130 -12.06022 -11.97523 -11.63873 -11.22481 -11.16624 -10.90955 -10.72199 -10.53943 -10.14555 -9.89664 -9.78629 -9.65248 -9.05810 -8.42807 -8.33239 -7.68823 -6.02574 -4.07661 0.35307 1.57447 2.12789 3.18510 3.31562 3.32152 3.37150 3.39353 3.78469 4.10740 4.41146 4.47277 4.58959 4.67213 5.01455 5.07171 5.17155 5.28064 5.30788 5.31810 5.36783 5.42480 5.46569 5.55677 5.61350 5.65373 5.74475 5.84798 5.90206 5.99047 6.04384 6.22145 6.24307 6.51839 7.05718 7.45685 7.52047 7.65882 7.92577 8.10549 8.23261 8.35691 8.87186 9.02797 9.56739 11.05656 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020926 B = 0.005037 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.733204 B = 5557.700759 C = 6134.953636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.583 5.583 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.575 3.425 14 O -0.520 6.520 15 C -0.183 4.183 16 C -0.012 4.012 17 C -0.130 4.130 18 C 0.065 3.935 19 C -0.085 4.085 20 N -0.224 5.224 21 N -0.349 5.349 22 C 0.083 3.917 23 C 0.496 3.504 24 O -0.515 6.515 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -12.904 -17.072 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.314 5.314 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.359 3.641 14 O -0.396 6.396 15 C -0.199 4.199 16 C -0.019 4.019 17 C -0.186 4.186 18 C -0.106 4.106 19 C -0.143 4.143 20 N -0.048 5.048 21 N -0.169 5.169 22 C -0.057 4.057 23 C 0.294 3.706 24 O -0.391 6.391 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.775 -11.770 -17.323 21.481 hybrid contribution 1.176 0.163 1.019 1.564 sum -3.600 -11.608 -16.304 20.335 Atomic orbital electron populations 1.22207 0.96770 1.01168 1.02561 1.21477 0.93733 0.84160 1.02459 1.48167 1.62884 1.13202 1.07136 1.19337 0.96511 0.93619 0.77631 1.21356 0.96743 1.32069 1.06277 0.92389 1.24937 0.97810 0.94909 0.96402 1.69928 1.35718 1.33233 1.14378 0.86560 0.84800 0.78192 0.77862 1.20169 1.21209 1.20245 1.17177 0.79347 0.85324 0.82289 1.90807 1.43138 1.19288 1.86373 1.21848 0.96671 1.01036 1.00362 1.21434 0.96312 0.90934 0.93182 1.21082 0.92652 1.03841 1.01073 1.21597 0.93624 1.01165 0.94245 1.20554 0.97792 0.94941 1.01061 1.70568 1.03516 1.04298 1.26449 1.46520 1.20549 1.30258 1.19614 1.22104 0.83588 1.02351 0.97637 1.17675 0.87686 0.83816 0.81459 1.90973 1.50195 1.31645 1.66302 0.92310 0.91738 0.93367 0.92120 0.89490 0.93869 0.94665 0.92643 0.88869 0.89772 0.89334 0.90185 0.89863 0.89784 0.90285 0.88824 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.11 1.82 5.89 -4.04 -0.02 1.80 16 3 N -0.58 -13.04 2.46 -176.33 -0.43 -13.47 16 4 C 0.25 6.65 5.12 -5.19 -0.03 6.62 16 5 C -0.53 -14.78 9.39 -34.44 -0.32 -15.10 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.57 13.31 5.53 -12.53 -0.07 13.24 16 14 O -0.52 -14.50 16.74 5.27 0.09 -14.42 16 15 C -0.18 -3.41 4.31 -104.19 -0.45 -3.86 16 16 C -0.01 -0.17 4.97 -103.55 -0.51 -0.69 16 17 C -0.13 -1.58 8.97 36.01 0.32 -1.25 16 18 C 0.06 0.74 6.87 -82.47 -0.57 0.17 16 19 C -0.08 -0.57 8.97 36.01 0.32 -0.25 16 20 N -0.22 -2.77 10.74 33.66 0.36 -2.41 16 21 N -0.35 -4.91 3.62 -69.83 -0.25 -5.17 16 22 C 0.08 0.83 10.58 59.84 0.63 1.47 16 23 C 0.50 9.11 6.91 -14.73 -0.10 9.01 16 24 O -0.51 -11.13 16.18 5.00 0.08 -11.05 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 28 H 0.06 0.89 4.69 -51.93 -0.24 0.65 16 29 H 0.09 1.47 8.07 -51.93 -0.42 1.05 16 30 H 0.04 1.33 7.50 -51.93 -0.39 0.94 16 31 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 1.03 7.14 -51.93 -0.37 0.66 16 34 H 0.08 0.71 6.64 -51.93 -0.35 0.36 16 35 H 0.09 1.39 7.39 -51.92 -0.38 1.00 16 36 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.03 7.36 -51.93 -0.38 0.65 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -37.10 343.83 -5.58 -42.68 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.81 Total: -2.51 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -0.51 Total: 10.53 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.41 Total: -47.03 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: 0.17 Total: -25.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.10 -5.58 -42.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330535070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.384 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds