Wall clock time and date at job start Fri Apr 10 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48503 * 109.46798 * 270.00088 * 3 2 1 5 5 H 1.48501 * 109.47094 * 29.99932 * 3 2 1 6 6 H 1.48497 * 109.47175 * 150.00288 * 3 2 1 7 7 C 1.38952 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00314 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99905 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99942 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00178 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.46956 * 110.99677 * 170.00200 * 13 12 10 15 15 C 1.53057 * 109.36162 * 183.18894 * 14 13 12 16 16 N 1.46954 * 109.36263 * 301.59585 * 15 14 13 17 17 C 1.46908 * 110.99966 * 183.18687 * 16 15 14 18 18 C 1.50697 * 109.46615 * 46.20263 * 17 16 15 19 19 N 1.30502 * 125.64991 * 275.01877 * 18 17 16 20 20 C 1.34130 * 109.25289 * 180.02562 * 19 18 17 21 21 C 1.34670 * 108.02584 * 359.97438 * 20 19 18 22 22 N 1.35052 * 125.64964 * 94.72331 * 18 17 16 23 23 H 0.96997 * 126.39227 * 359.97438 * 22 18 17 24 24 C 1.46956 * 110.88042 * 59.32532 * 16 15 14 25 25 C 1.46954 * 110.99900 * 293.79852 * 13 12 10 26 26 H 0.96997 * 119.99590 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99873 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.46825 * 60.00356 * 12 10 9 29 29 H 1.09002 * 109.47091 * 300.00396 * 12 10 9 30 30 H 1.09002 * 109.48908 * 303.15220 * 14 13 12 31 31 H 1.09002 * 109.49369 * 63.22349 * 14 13 12 32 32 H 1.08997 * 109.48880 * 61.56749 * 15 14 13 33 33 H 1.09004 * 109.48844 * 181.62946 * 15 14 13 34 34 H 1.08997 * 109.47258 * 166.20113 * 17 16 15 35 35 H 1.09001 * 109.46957 * 286.20350 * 17 16 15 36 36 H 1.08002 * 125.99032 * 180.02562 * 20 19 18 37 37 H 1.07992 * 126.59544 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.48908 * 180.71202 * 24 16 15 39 39 H 1.09002 * 109.49369 * 60.64073 * 24 16 15 40 40 H 1.08997 * 109.49355 * 296.78047 * 25 13 12 41 41 H 1.09003 * 109.49032 * 56.82589 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1983 -5.9795 0.0016 14 6 1.5135 -7.2576 0.2404 15 6 2.5490 -8.3824 0.3126 16 7 3.3120 -8.4235 -0.9427 17 6 4.2667 -9.5401 -0.9422 18 6 3.5782 -10.7892 -0.4557 19 7 3.4264 -11.1368 0.7930 20 6 2.7692 -12.3047 0.8502 21 6 2.5031 -12.6954 -0.4109 22 7 3.0112 -11.7316 -1.2395 23 1 2.9731 -11.7273 -2.2087 24 6 3.9968 -7.1454 -1.1815 25 6 2.9613 -6.0206 -1.2536 26 1 -0.4849 0.8401 0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6168 -4.9209 -0.8887 29 1 0.6173 -4.9205 0.8913 30 1 0.9659 -7.2066 1.1815 31 1 0.8179 -7.4555 -0.5752 32 1 3.2281 -8.1986 1.1451 33 1 2.0411 -9.3354 0.4607 34 1 4.6384 -9.7008 -1.9542 35 1 5.1011 -9.3044 -0.2817 36 1 2.4998 -12.8379 1.7499 37 1 1.9852 -13.5943 -0.7106 38 1 4.5444 -7.1964 -2.1226 39 1 4.6924 -6.9475 -0.3659 40 1 2.2822 -6.2044 -2.0862 41 1 3.4690 -5.0675 -1.4020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330783332.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:29 Heat of formation + Delta-G solvation = 21.630362 kcal Electronic energy + Delta-G solvation = -23262.516062 eV Core-core repulsion = 19791.738993 eV Total energy + Delta-G solvation = -3470.777069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.99561 -40.71102 -39.47498 -36.57967 -35.75425 -33.42816 -33.28093 -32.05389 -31.62235 -29.58725 -27.59195 -26.09519 -24.64738 -24.23102 -22.42525 -21.44135 -21.07833 -20.74867 -19.86435 -18.77729 -17.73742 -17.44407 -16.57505 -16.37744 -16.11939 -15.96506 -15.85296 -15.52015 -15.28332 -15.25687 -14.73082 -14.62997 -14.52861 -13.93131 -13.70479 -13.49420 -13.21568 -12.94925 -12.82757 -12.63433 -12.41190 -12.23361 -12.11598 -11.96510 -11.78392 -11.43283 -10.98931 -10.92715 -10.26292 -9.98965 -9.60589 -9.26922 -9.15919 -8.45272 -5.93774 1.10523 1.38541 1.42085 1.55057 2.06352 2.10606 2.28655 2.29181 2.75432 2.99572 3.21529 3.39549 3.47880 3.88411 4.02055 4.13903 4.24187 4.32776 4.37266 4.40574 4.48429 4.49991 4.52664 4.58619 4.61347 4.65168 4.81538 4.90191 4.93787 5.05212 5.11334 5.20052 5.42217 5.78499 5.85014 5.87540 5.97426 6.11249 6.22471 6.54481 6.62176 7.14336 7.17381 7.57859 8.13637 8.72330 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.049060 B = 0.002671 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.590816 B =10479.231398 C =10741.539705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.536 5.536 14 C 0.061 3.939 15 C 0.075 3.925 16 N -0.532 5.532 17 C 0.137 3.863 18 C 0.197 3.803 19 N -0.524 5.524 20 C -0.062 4.062 21 C -0.035 4.035 22 N -0.547 5.547 23 H 0.434 0.566 24 C 0.070 3.930 25 C 0.059 3.941 26 H 0.277 0.723 27 H 0.396 0.604 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.180 0.820 37 H 0.214 0.786 38 H 0.103 0.897 39 H 0.029 0.971 40 H 0.038 0.962 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.287 -24.535 -5.288 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.231 3.769 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.262 5.262 14 C -0.067 4.067 15 C -0.054 4.054 16 N -0.258 5.258 17 C 0.009 3.991 18 C -0.067 4.067 19 N -0.246 5.246 20 C -0.210 4.210 21 C -0.170 4.170 22 N -0.151 5.151 23 H 0.275 0.725 24 C -0.058 4.058 25 C -0.069 4.069 26 H 0.087 0.913 27 H 0.229 0.771 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.137 0.863 35 H 0.076 0.924 36 H 0.197 0.803 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.236 -23.945 -4.580 24.481 hybrid contribution -0.541 0.557 -0.756 1.084 sum 1.695 -23.388 -5.336 24.048 Atomic orbital electron populations 1.69677 1.06850 1.29243 1.50542 1.26043 0.96542 1.02411 0.96387 0.84930 0.77861 0.76896 0.78660 1.19545 1.19606 1.19824 1.19655 0.92676 0.83937 1.49719 0.90273 1.41937 1.09295 1.04695 1.65307 1.20697 0.88284 0.85804 0.82129 1.90454 1.15599 1.87722 1.56084 1.21708 0.93638 0.88643 1.03283 1.61718 1.25852 1.02449 1.36172 1.22233 0.95508 0.87556 1.01414 1.22015 0.95514 0.97871 0.89959 1.62441 1.25735 1.03034 1.34602 1.20489 0.92180 0.83968 1.02495 1.22966 1.02643 0.94684 0.86387 1.70257 1.19655 1.15126 1.19545 1.22768 1.04617 0.95072 0.98536 1.23334 1.05649 0.97551 0.90488 1.43245 1.42919 1.17802 1.11165 0.72489 1.22073 0.94896 0.87132 1.01696 1.22183 0.96129 0.99187 0.89356 0.91343 0.77079 0.91555 0.87461 0.89667 0.93738 0.95665 0.89782 0.86281 0.92442 0.80265 0.76911 0.87852 0.95229 0.94378 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -30.05 5.29 -306.99 -1.62 -31.68 16 10 C 0.44 21.61 7.48 87.66 0.66 22.27 16 11 O -0.61 -34.21 13.92 -3.06 -0.04 -34.25 16 12 C 0.06 2.14 5.45 85.56 0.47 2.60 16 13 N -0.54 -18.73 4.45 -900.26 -4.00 -22.73 16 14 C 0.06 1.70 5.61 86.31 0.48 2.18 16 15 C 0.07 2.02 4.95 86.31 0.43 2.45 16 16 N -0.53 -12.62 4.85 -900.25 -4.37 -16.99 16 17 C 0.14 2.62 5.91 85.55 0.51 3.13 16 18 C 0.20 3.92 6.15 138.12 0.85 4.77 16 19 N -0.52 -12.81 10.00 -188.12 -1.88 -14.70 16 20 C -0.06 -1.15 11.87 83.52 0.99 -0.16 16 21 C -0.03 -0.43 12.04 83.09 1.00 0.57 16 22 N -0.55 -7.12 6.15 -186.27 -1.15 -8.27 16 23 H 0.43 2.91 8.96 -92.71 -0.83 2.07 16 24 C 0.07 1.89 5.58 86.31 0.48 2.37 16 25 C 0.06 1.99 5.26 86.31 0.45 2.44 16 26 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 27 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 28 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 29 H 0.11 3.51 8.03 -2.39 -0.02 3.49 16 30 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 2.25 5.99 -2.39 -0.01 2.24 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 36 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 2.94 5.85 -2.39 -0.01 2.92 16 Total: -1.00 -73.47 335.48 -3.66 -77.13 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.50 Total: 31.99 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.60 Total: 24.16 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -12.74 Total: -144.46 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.04 Total: -34.25 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -73.47 -3.66 -77.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330783332.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.760 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds