Wall clock time and date at job start Fri Apr 10 2020 17:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00296 * 2 1 4 4 C 1.52993 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.35199 * 126.00478 * 124.96578 * 5 4 3 7 7 C 1.34569 * 107.61508 * 180.02562 * 6 5 4 8 8 C 1.40481 * 108.04301 * 359.91097 * 7 6 5 9 9 N 1.30134 * 108.22716 * 0.12355 * 8 7 6 10 10 C 1.50948 * 123.48967 * 180.30000 * 8 7 6 11 11 H 1.08997 * 109.72030 * 256.92626 * 10 8 7 12 12 N 1.46507 * 109.71506 * 136.28244 * 10 8 7 13 13 C 1.34773 * 119.99696 * 86.25613 * 12 10 8 14 14 O 1.21691 * 120.00332 * 359.97438 * 13 12 10 15 15 C 1.46374 * 120.00160 * 179.97438 * 13 12 10 16 16 H 1.08005 * 119.99649 * 359.97438 * 15 13 12 17 17 C 1.40052 * 120.00357 * 179.97438 * 15 13 12 18 18 N 1.30664 * 119.99962 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99863 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47414 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47211 * 120.00390 * 19 17 15 22 22 H 1.48507 * 109.46692 * 240.00173 * 19 17 15 23 23 C 1.53372 * 108.20350 * 16.60736 * 10 8 7 24 24 C 1.53026 * 109.74563 * 309.34734 * 23 10 8 25 25 C 1.50889 * 128.32407 * 179.86103 * 7 6 5 26 26 H 1.09002 * 109.47004 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47676 * 59.99797 * 1 2 3 28 28 H 1.09001 * 109.47532 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46970 * 59.99458 * 3 2 1 30 30 H 1.09003 * 109.46782 * 300.00269 * 3 2 1 31 31 H 1.08995 * 109.47548 * 60.00058 * 4 3 2 32 32 H 1.09003 * 109.47187 * 299.99749 * 4 3 2 33 33 H 1.08002 * 126.19193 * 0.10759 * 6 5 4 34 34 H 0.96994 * 120.00230 * 266.24993 * 12 10 8 35 35 H 0.97001 * 120.00014 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.42359 * 189.25758 * 23 10 8 37 37 H 1.08999 * 109.42169 * 69.43103 * 23 10 8 38 38 H 1.09004 * 109.42597 * 191.80078 * 24 23 10 39 39 H 1.08997 * 109.42951 * 311.64720 * 24 23 10 40 40 H 1.08995 * 109.71622 * 76.89870 * 25 7 6 41 41 H 1.08999 * 109.75636 * 316.26814 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0275 2.9935 0.8962 7 6 5.3241 4.2594 0.5493 8 6 4.5861 4.5793 -0.6024 9 7 3.8722 3.5416 -0.9296 10 6 4.6607 5.9188 -1.2941 11 1 3.7782 6.5094 -1.0482 12 7 4.7369 5.7228 -2.7440 13 6 3.6068 5.5882 -3.4660 14 8 2.5233 5.6290 -2.9136 15 6 3.6828 5.3929 -4.9147 16 1 4.6444 5.3571 -5.4050 17 6 2.5085 5.2525 -5.6649 18 7 1.3451 5.2964 -5.0718 19 14 2.6056 5.0026 -7.5136 20 1 4.0288 4.9909 -7.9375 21 1 1.9711 3.7088 -7.8722 22 1 1.8940 6.1102 -8.2008 23 6 5.9208 6.6422 -0.8029 24 6 5.9581 6.6346 0.7269 25 6 6.2687 5.2192 1.2300 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8463 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8574 0.6435 0.8891 33 1 5.4331 2.4510 1.7375 34 1 5.6005 5.6900 -3.1843 35 1 0.5318 5.1987 -5.5914 36 1 5.9102 7.6719 -1.1602 37 1 6.8043 6.1343 -1.1896 38 1 6.7308 7.3205 1.0741 39 1 4.9906 6.9531 1.1148 40 1 7.2981 4.9590 0.9837 41 1 6.1260 5.1732 2.3096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331065110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:35 Heat of formation + Delta-G solvation = -41.648097 kcal Electronic energy + Delta-G solvation = -23819.722161 eV Core-core repulsion = 20313.908382 eV Total energy + Delta-G solvation = -3505.813780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.36783 -39.51125 -39.03277 -37.47198 -34.89055 -34.25121 -34.14222 -31.64028 -29.93101 -29.24155 -27.81374 -27.29082 -25.14591 -23.40365 -22.67640 -21.94832 -21.16699 -19.90777 -18.97731 -18.09221 -17.45169 -17.36497 -16.90134 -16.64749 -16.31350 -16.03335 -15.80694 -15.21627 -14.93596 -14.68808 -14.55759 -14.22040 -14.10108 -13.63078 -13.43014 -13.23867 -13.08491 -12.79643 -12.77711 -12.60214 -12.55987 -12.39852 -12.09096 -11.97266 -11.71905 -11.55051 -11.05461 -10.93651 -10.87551 -10.23503 -9.75060 -9.47653 -9.13479 -8.26207 -6.82408 1.05847 1.35900 1.37034 1.51100 1.54238 1.88232 2.24351 2.52189 2.69103 3.19522 3.53952 3.66810 3.78259 3.82522 4.01366 4.08614 4.10999 4.18702 4.33753 4.36643 4.43172 4.47598 4.54155 4.55580 4.60412 4.70407 4.80968 4.95655 5.00549 5.08612 5.25256 5.31943 5.35191 5.42064 5.52845 5.76767 5.90301 5.91993 6.25427 6.28920 6.32751 6.89018 6.98705 7.61183 8.56083 8.74110 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.006134 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.977076 B = 4563.857136 C = 6974.470054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.145 3.855 5 N -0.395 5.395 6 C 0.060 3.940 7 C -0.248 4.248 8 C 0.050 3.950 9 N -0.315 5.315 10 C 0.228 3.772 11 H 0.048 0.952 12 N -0.746 5.746 13 C 0.548 3.452 14 O -0.619 6.619 15 C -0.576 4.576 16 H 0.082 0.918 17 C 0.029 3.971 18 N -0.823 5.823 19 Si 0.995 3.005 20 H -0.247 1.247 21 H -0.272 1.272 22 H -0.265 1.265 23 C -0.107 4.107 24 C -0.110 4.110 25 C -0.029 4.029 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.080 0.920 32 H 0.146 0.854 33 H 0.221 0.779 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -6.041 14.426 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.017 4.017 4 C 0.024 3.976 5 N -0.179 5.179 6 C -0.083 4.083 7 C -0.260 4.260 8 C -0.121 4.121 9 N -0.135 5.135 10 C 0.120 3.880 11 H 0.066 0.934 12 N -0.399 5.399 13 C 0.352 3.648 14 O -0.505 6.505 15 C -0.612 4.612 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.452 5.452 19 Si 0.814 3.186 20 H -0.170 1.170 21 H -0.197 1.197 22 H -0.190 1.190 23 C -0.146 4.146 24 C -0.147 4.147 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.237 0.763 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.010 -6.834 14.009 17.525 hybrid contribution -0.160 0.356 -0.819 0.908 sum 7.850 -6.477 13.190 16.660 Atomic orbital electron populations 1.22982 0.78966 1.04529 1.00457 1.87707 1.21858 1.26542 1.95581 1.22489 0.94139 0.84977 1.00108 1.21421 0.91204 0.78835 1.06158 1.48881 1.35285 1.11875 1.21877 1.22719 0.93854 0.95220 0.96525 1.20577 1.08154 0.96975 1.00249 1.23310 0.95771 0.96138 0.96859 1.77471 1.23730 0.98290 1.14031 1.19218 0.99283 0.88718 0.80829 0.93440 1.45832 1.08789 1.79525 1.05757 1.18451 0.82471 0.75725 0.88200 1.90548 1.29731 1.56659 1.73518 1.21439 0.94533 1.53661 0.91602 0.90021 1.26935 0.93987 0.91604 1.06044 1.70220 0.99065 1.37094 1.38866 0.85021 0.79985 0.78401 0.75149 1.17027 1.19677 1.18976 1.21769 0.94760 1.00194 0.97839 1.21541 1.02612 0.97723 0.92875 1.20060 0.96506 0.90839 0.99295 0.92740 0.95063 0.86577 0.92518 0.95973 0.90202 0.83592 0.76262 0.77466 0.91914 0.90281 0.90205 0.87879 0.92972 0.89649 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.86 16 2 O -0.40 -11.37 10.70 -148.98 -1.59 -12.97 16 3 C 0.06 1.93 6.12 71.98 0.44 2.38 16 4 C 0.14 4.03 6.88 86.38 0.59 4.62 16 5 N -0.39 -13.54 3.69 -348.48 -1.29 -14.83 16 6 C 0.06 1.57 11.41 83.33 0.95 2.52 16 7 C -0.25 -7.40 5.89 -20.10 -0.12 -7.52 16 8 C 0.05 2.07 6.68 43.44 0.29 2.36 16 9 N -0.32 -14.87 12.40 -47.14 -0.58 -15.46 16 10 C 0.23 9.64 2.83 44.45 0.13 9.77 16 11 H 0.05 2.38 7.57 -2.39 -0.02 2.36 16 12 N -0.75 -36.45 5.07 -449.41 -2.28 -38.73 16 13 C 0.55 33.90 7.72 86.36 0.67 34.56 16 14 O -0.62 -43.86 14.68 -4.32 -0.06 -43.92 16 15 C -0.58 -34.81 9.54 24.83 0.24 -34.58 16 16 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 17 C 0.03 1.70 5.50 85.31 0.47 2.17 16 18 N -0.82 -53.21 11.83 21.84 0.26 -52.95 16 19 Si 1.00 43.56 29.56 68.60 2.03 45.59 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.11 -3.02 5.35 30.73 0.16 -2.86 16 24 C -0.11 -2.35 5.87 30.73 0.18 -2.17 16 25 C -0.03 -0.58 6.28 30.04 0.19 -0.39 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.15 2.58 8.07 -2.39 -0.02 2.56 16 33 H 0.22 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.39 16.76 8.59 -92.71 -0.80 15.96 16 35 H 0.27 15.88 8.29 -92.71 -0.77 15.11 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 38 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -91.25 346.38 2.15 -89.10 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.24 Total: 31.44 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.44 Total: 12.73 kcal Atomic # 7 Polarization: -118.07 SS G_CDS: -3.89 Total: -121.96 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.66 Total: -56.89 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -91.25 2.15 -89.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331065110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.449 kcal (2) G-P(sol) polarization free energy of solvation -91.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds