Wall clock time and date at job start Fri Apr 10 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48499 * 109.46830 * 240.00026 * 3 2 1 5 5 H 1.48500 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47190 * 120.00091 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99884 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47135 * 180.02562 * 9 7 2 11 11 C 1.30093 * 120.00491 * 115.44508 * 10 9 7 12 12 O 1.35091 * 120.00229 * 185.31989 * 11 10 9 13 13 N 1.37346 * 119.99723 * 5.31915 * 11 10 9 14 14 C 1.46929 * 120.63092 * 265.14478 * 13 11 10 15 15 C 1.53192 * 108.77773 * 233.33448 * 14 13 11 16 16 C 1.53046 * 109.31171 * 305.36579 * 15 14 13 17 17 C 1.53040 * 109.53640 * 61.36130 * 16 15 14 18 18 H 1.09005 * 109.49293 * 58.59005 * 17 16 15 19 19 C 1.53003 * 109.49531 * 178.65021 * 17 16 15 20 20 N 1.46496 * 109.47116 * 185.00245 * 19 17 16 21 21 C 1.35310 * 125.86834 * 124.71511 * 20 19 17 22 22 C 1.35349 * 106.17695 * 179.90524 * 21 20 19 23 23 N 1.33768 * 106.49692 * 0.35126 * 22 21 20 24 24 N 1.28634 * 108.88633 * 359.77564 * 23 22 21 25 25 C 1.46931 * 120.63094 * 84.86599 * 13 11 10 26 26 H 0.97004 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 60.00239 * 9 7 2 28 28 H 1.09004 * 109.47129 * 299.99979 * 9 7 2 29 29 H 0.96689 * 114.00457 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.58695 * 353.12453 * 14 13 11 31 31 H 1.09004 * 109.58604 * 113.54521 * 14 13 11 32 32 H 1.08995 * 109.49421 * 65.31437 * 15 14 13 33 33 H 1.08996 * 109.49486 * 185.38377 * 15 14 13 34 34 H 1.08992 * 109.45746 * 181.38516 * 16 15 14 35 35 H 1.09004 * 109.45961 * 301.34484 * 16 15 14 36 36 H 1.09005 * 109.46910 * 305.00297 * 19 17 16 37 37 H 1.09002 * 109.46956 * 65.00114 * 19 17 16 38 38 H 1.08008 * 126.91476 * 0.02562 * 21 20 19 39 39 H 1.08004 * 126.75225 * 180.12198 * 22 21 20 40 40 H 1.08996 * 109.58556 * 246.45455 * 25 13 11 41 41 H 1.08993 * 109.58289 * 6.87970 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2579 -4.4217 1.0168 12 8 3.2065 -5.3822 1.0656 13 7 1.3512 -4.2992 2.0412 14 6 1.6792 -3.5182 3.2417 15 6 1.4479 -4.3933 4.4777 16 6 0.0173 -4.9366 4.4526 17 6 -0.1802 -5.8007 3.2050 18 1 0.5402 -6.6187 3.2114 19 6 -1.6001 -6.3706 3.1982 20 7 -1.7511 -7.2918 2.0691 21 6 -2.1529 -8.5815 2.1464 22 6 -2.1532 -9.0531 0.8778 23 7 -1.7492 -8.0444 0.0975 24 7 -1.5189 -7.0150 0.8337 25 6 0.0326 -4.9416 1.9547 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.7976 -5.3905 0.3005 30 1 2.7238 -3.2096 3.2028 31 1 1.0377 -2.6383 3.2917 32 1 2.1528 -5.2245 4.4719 33 1 1.5954 -3.7972 5.3782 34 1 -0.1577 -5.5396 5.3435 35 1 -0.6868 -4.1047 4.4333 36 1 -1.7813 -6.9057 4.1304 37 1 -2.3180 -5.5562 3.1012 38 1 -2.4216 -9.1248 3.0404 39 1 -2.4226 -10.0491 0.5586 40 1 -0.7430 -4.1779 1.8997 41 1 -0.0090 -5.5722 1.0667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331120967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:41 Heat of formation + Delta-G solvation = 66.306598 kcal Electronic energy + Delta-G solvation = -24200.132260 eV Core-core repulsion = 20731.292499 eV Total energy + Delta-G solvation = -3468.839762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.14093 -40.63880 -38.77336 -36.49345 -35.67804 -34.44638 -32.79835 -32.33051 -31.77522 -29.14255 -27.90157 -26.07081 -24.56659 -23.89248 -23.46833 -22.39819 -21.73403 -20.48916 -18.64840 -18.39527 -18.28101 -17.63602 -17.20478 -16.60468 -16.30082 -15.82362 -15.67908 -15.42426 -15.17434 -14.80746 -14.58833 -14.34394 -14.11611 -13.87305 -13.78087 -13.65312 -12.96895 -12.86978 -12.67770 -12.54420 -12.25010 -12.19624 -11.83622 -11.81873 -11.77076 -11.72591 -11.46515 -10.95566 -10.83590 -10.28942 -10.25033 -9.86261 -9.00751 -8.22644 -6.35713 0.75658 1.34854 1.40603 1.45366 1.53046 1.57175 1.70687 1.91059 2.39009 3.07408 3.32948 3.47088 3.67315 3.72261 3.90376 4.07963 4.11028 4.27922 4.30812 4.35394 4.39650 4.43030 4.53164 4.63082 4.82122 4.88066 4.94755 5.00695 5.07258 5.11832 5.17987 5.23083 5.33197 5.36398 5.46175 5.65482 5.78286 6.08805 6.29738 6.36298 6.64829 6.81094 7.27486 7.50656 7.62198 8.86890 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.004370 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.451608 B = 6406.218089 C = 6745.889954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.219 3.781 10 N -0.608 5.608 11 C 0.544 3.456 12 O -0.493 6.493 13 N -0.668 5.668 14 C 0.141 3.859 15 C -0.122 4.122 16 C -0.100 4.100 17 C -0.102 4.102 18 H 0.075 0.925 19 C 0.115 3.885 20 N -0.288 5.288 21 C -0.029 4.029 22 C -0.072 4.072 23 N -0.326 5.326 24 N -0.134 5.134 25 C 0.149 3.851 26 H 0.267 0.733 27 H -0.014 1.014 28 H 0.007 0.993 29 H 0.418 0.582 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.104 0.896 38 H 0.244 0.756 39 H 0.216 0.784 40 H 0.034 0.966 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.330 -17.570 16.540 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.092 3.908 10 N -0.345 5.345 11 C 0.230 3.770 12 O -0.288 6.288 13 N -0.408 5.408 14 C 0.018 3.982 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.123 4.123 18 H 0.093 0.907 19 C -0.005 4.005 20 N -0.082 5.082 21 C -0.181 4.181 22 C -0.230 4.230 23 N -0.191 5.191 24 N -0.113 5.113 25 C 0.025 3.975 26 H 0.076 0.924 27 H 0.004 0.996 28 H 0.025 0.975 29 H 0.275 0.725 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.088 0.912 36 H 0.183 0.817 37 H 0.123 0.877 38 H 0.260 0.740 39 H 0.233 0.767 40 H 0.052 0.948 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.832 -16.377 15.244 22.699 hybrid contribution -0.105 0.363 0.026 0.378 sum -3.936 -16.014 15.270 22.475 Atomic orbital electron populations 1.70089 1.07594 1.28101 1.50938 1.25889 0.95836 1.02921 0.94350 0.85400 0.78225 0.77664 0.79079 1.19721 1.20014 1.18991 1.21306 0.92992 0.91100 1.51493 0.93293 1.19060 0.90119 0.87187 0.94465 1.72164 1.29123 1.08462 1.24791 1.20034 0.85485 0.86537 0.84972 1.84687 1.43080 1.51509 1.49549 1.46109 1.12977 1.60979 1.20698 1.21364 0.99344 0.93056 0.84445 1.21889 0.97767 0.99663 0.96784 1.21456 0.96655 0.99386 0.96257 1.21779 0.95621 0.98403 0.96477 0.90655 1.22612 0.98075 0.93410 0.86391 1.47907 1.41367 1.11285 1.07612 1.24507 1.05461 0.85155 1.02927 1.24304 1.06494 1.01620 0.90613 1.75107 1.16518 0.98726 1.28732 1.78363 1.21763 1.21941 0.89227 1.21484 0.82746 0.94445 0.98820 0.92435 0.99579 0.97491 0.72463 0.92781 0.94244 0.91602 0.88640 0.87242 0.91219 0.81703 0.87747 0.74007 0.76749 0.94766 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -32.78 9.39 25.60 0.24 -32.54 16 8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 9 C 0.22 13.16 6.07 85.63 0.52 13.68 16 10 N -0.61 -31.79 10.48 -469.72 -4.92 -36.71 16 11 C 0.54 23.88 7.34 179.63 1.32 25.19 16 12 O -0.49 -17.96 13.62 -83.66 -1.14 -19.10 16 13 N -0.67 -25.90 1.56 -819.21 -1.27 -27.17 16 14 C 0.14 4.78 6.31 86.36 0.54 5.33 16 15 C -0.12 -2.62 6.08 30.67 0.19 -2.44 16 16 C -0.10 -1.63 5.17 30.62 0.16 -1.47 16 17 C -0.10 -2.16 2.53 -10.72 -0.03 -2.19 16 18 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 19 C 0.12 1.67 5.94 86.38 0.51 2.19 16 20 N -0.29 -6.23 3.44 -347.72 -1.20 -7.42 16 21 C -0.03 -0.42 11.57 83.49 0.97 0.54 16 22 C -0.07 -1.49 12.05 83.73 1.01 -0.48 16 23 N -0.33 -10.70 12.41 -58.26 -0.72 -11.42 16 24 N -0.13 -4.45 10.35 37.02 0.38 -4.06 16 25 C 0.15 5.18 4.92 86.36 0.43 5.60 16 26 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 27 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.01 0.44 6.04 -2.38 -0.01 0.42 16 29 H 0.42 12.36 8.97 -74.06 -0.66 11.70 16 30 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.17 0.54 8.07 -2.38 -0.02 0.52 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.24 0.55 8.06 -2.91 -0.02 0.53 16 39 H 0.22 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.03 1.33 8.05 -2.39 -0.02 1.31 16 41 H 0.06 2.62 5.63 -2.39 -0.01 2.61 16 Total: -1.00 -87.55 340.87 0.13 -87.42 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.38 Total: 13.43 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.32 Total: 14.39 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -7.45 Total: -144.07 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.14 Total: -19.10 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -87.55 0.13 -87.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331120967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.725 kcal (2) G-P(sol) polarization free energy of solvation -87.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds