Wall clock time and date at job start Fri Apr 10 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48504 * 109.46968 * 270.00305 * 3 2 1 5 5 H 1.48500 * 109.46976 * 29.99463 * 3 2 1 6 6 H 1.48498 * 109.47065 * 149.99871 * 3 2 1 7 7 C 1.37871 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00336 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.30107 * 119.99987 * 115.43729 * 10 9 7 12 12 O 1.35101 * 119.99732 * 185.30901 * 11 10 9 13 13 N 1.37339 * 119.99906 * 5.30839 * 11 10 9 14 14 C 1.46921 * 120.62980 * 85.13851 * 13 11 10 15 15 C 1.53187 * 108.77811 * 126.38770 * 14 13 11 16 16 C 1.53047 * 109.31152 * 54.63491 * 15 14 13 17 17 C 1.52998 * 109.46095 * 178.61487 * 16 15 14 18 18 N 1.46497 * 109.47368 * 184.99965 * 17 16 15 19 19 C 1.35311 * 125.87299 * 124.99660 * 18 17 16 20 20 C 1.35348 * 106.17687 * 180.02562 * 19 18 17 21 21 N 1.33768 * 106.49625 * 0.02562 * 20 19 18 22 22 N 1.28638 * 108.88687 * 359.72952 * 21 20 19 23 23 C 1.53040 * 109.53620 * 298.63501 * 16 15 14 24 24 C 1.46922 * 120.63078 * 265.13313 * 13 11 10 25 25 H 0.96999 * 120.00766 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47396 * 59.99572 * 9 7 2 27 27 H 1.09000 * 109.46841 * 299.99540 * 9 7 2 28 28 H 0.96701 * 114.00104 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.58953 * 6.60037 * 14 13 11 30 30 H 1.09004 * 109.58612 * 246.17404 * 14 13 11 31 31 H 1.09003 * 109.50064 * 294.68256 * 15 14 13 32 32 H 1.09000 * 109.49997 * 174.58307 * 15 14 13 33 33 H 1.08993 * 109.45817 * 58.65156 * 16 15 14 34 34 H 1.09004 * 109.46871 * 304.99995 * 17 16 15 35 35 H 1.09002 * 109.47219 * 64.99317 * 17 16 15 36 36 H 1.07997 * 126.90830 * 359.97438 * 19 18 17 37 37 H 1.08000 * 126.75323 * 179.97438 * 20 19 18 38 38 H 1.08995 * 109.49996 * 181.31526 * 23 16 15 39 39 H 1.09001 * 109.49634 * 301.41250 * 23 16 15 40 40 H 1.08998 * 109.58680 * 113.81952 * 24 13 11 41 41 H 1.09004 * 109.58629 * 353.40132 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.6735 -3.0277 -1.0147 12 8 5.0312 -4.3296 -1.0624 13 7 5.0207 -2.1821 -2.0397 14 6 6.2393 -1.3655 -1.9562 15 6 7.0888 -1.6183 -3.2056 16 6 6.2425 -1.3586 -4.4541 17 6 7.0976 -1.5766 -5.7039 18 7 6.3244 -1.2134 -6.8941 19 6 6.6993 -0.3237 -7.8421 20 6 5.6965 -0.2958 -8.7507 21 7 4.7691 -1.1580 -8.3194 22 7 5.1736 -1.6891 -7.2198 23 6 5.0533 -2.3216 -4.4756 24 6 4.1807 -2.0768 -3.2405 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6798 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 4.7421 -4.8453 -0.2972 29 1 6.8053 -1.6436 -1.0671 30 1 5.9695 -0.3106 -1.9050 31 1 7.4334 -2.6524 -3.2083 32 1 7.9483 -0.9479 -3.2029 33 1 5.8778 -0.3316 -4.4384 34 1 7.9903 -0.9537 -5.6465 35 1 7.3895 -2.6249 -5.7661 36 1 7.6143 0.2495 -7.8681 37 1 5.6531 0.3051 -9.6470 38 1 4.4640 -2.1520 -5.3767 39 1 5.4170 -3.3491 -4.4663 40 1 3.7430 -1.0801 -3.2940 41 1 3.3884 -2.8243 -3.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331127685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:47 Heat of formation + Delta-G solvation = 100.848822 kcal Electronic energy + Delta-G solvation = -23931.792362 eV Core-core repulsion = 20464.450464 eV Total energy + Delta-G solvation = -3467.341898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.39668 -39.38684 -37.61807 -35.40772 -34.10425 -32.55795 -31.53007 -31.33767 -30.80986 -28.22406 -27.13892 -23.97616 -23.42139 -22.57334 -22.37037 -21.42428 -20.63131 -19.28210 -17.74084 -17.27510 -16.75695 -16.35304 -15.93365 -15.28692 -15.15205 -14.78332 -14.35257 -14.25260 -14.04866 -13.75085 -13.51783 -13.17780 -12.90023 -12.60158 -12.32447 -12.11770 -12.08577 -11.71519 -11.33960 -11.13610 -11.07083 -10.99344 -10.59702 -10.50767 -10.45285 -10.27557 -10.15506 -9.55552 -9.52129 -8.91001 -8.47744 -8.06717 -7.72504 -6.05818 -4.02982 1.44781 2.16468 2.45829 3.02706 3.23737 3.25902 3.33434 3.35185 4.08316 4.29106 4.35132 4.40218 4.61094 4.77423 4.79213 4.92465 4.97755 5.05221 5.15967 5.26371 5.34956 5.46271 5.53853 5.57442 5.73460 5.76169 5.84964 5.95423 6.05854 6.08386 6.13994 6.25484 6.46846 6.53457 6.91762 7.11867 7.53719 7.68468 7.72194 8.16419 8.38985 8.49443 8.98522 9.06960 9.55493 11.07623 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.004544 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.722955 B = 6160.958771 C = 7102.124357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.167 3.833 10 N -0.556 5.556 11 C 0.526 3.474 12 O -0.502 6.502 13 N -0.661 5.661 14 C 0.149 3.851 15 C -0.126 4.126 16 C -0.096 4.096 17 C 0.118 3.882 18 N -0.286 5.286 19 C -0.055 4.055 20 C -0.054 4.054 21 N -0.276 5.276 22 N -0.074 5.074 23 C -0.142 4.142 24 C 0.149 3.851 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.011 0.989 28 H 0.406 0.594 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.248 -0.906 -13.456 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.093 0.907 9 C 0.039 3.961 10 N -0.292 5.292 11 C 0.211 3.789 12 O -0.296 6.296 13 N -0.400 5.400 14 C 0.025 3.975 15 C -0.166 4.166 16 C -0.115 4.115 17 C -0.003 4.003 18 N -0.080 5.080 19 C -0.207 4.207 20 C -0.212 4.212 21 N -0.142 5.142 22 N -0.054 5.054 23 C -0.181 4.181 24 C 0.025 3.975 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.205 0.795 37 H 0.204 0.796 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 18.889 -1.942 -12.742 22.868 hybrid contribution 1.415 1.926 -0.427 2.428 sum 20.304 -0.016 -13.170 24.201 Atomic orbital electron populations 1.69883 1.06098 1.26856 1.51024 1.24860 0.94714 0.98711 0.94854 0.86853 0.80366 0.84027 0.78482 1.20244 1.21091 1.19197 1.20961 0.88365 0.94711 1.50496 0.90680 1.19985 0.96476 0.83608 0.95999 1.72270 1.12798 1.21347 1.22787 1.19936 0.91462 0.82309 0.85190 1.84705 1.76925 1.19059 1.48871 1.46092 1.28033 1.45030 1.20866 1.21186 0.85067 0.94700 0.96594 1.21979 0.97699 1.02507 0.94390 1.21411 0.96433 1.01638 0.92054 1.22363 0.93519 1.03345 0.81098 1.47590 1.14585 1.27385 1.18408 1.23683 1.04084 1.00322 0.92563 1.23617 0.92093 1.02793 1.02661 1.75174 1.24870 1.09584 1.04547 1.78265 0.96700 1.20108 1.10343 1.22334 0.96780 0.98721 1.00253 1.21266 0.91982 1.01778 0.82448 0.92598 0.95318 0.97154 0.73982 0.90967 0.92482 0.90953 0.91156 0.90253 0.87712 0.88191 0.79510 0.79573 0.88608 0.91576 0.92249 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.51 -15.00 9.94 -34.44 -0.34 -15.35 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.17 4.22 5.14 -5.20 -0.03 4.19 16 10 N -0.56 -12.56 10.48 -63.71 -0.67 -13.23 16 11 C 0.53 9.96 7.34 -88.56 -0.65 9.31 16 12 O -0.50 -8.06 13.62 -17.01 -0.23 -8.29 16 13 N -0.66 -11.08 1.55 -175.37 -0.27 -11.36 16 14 C 0.15 1.99 6.12 -3.72 -0.02 1.97 16 15 C -0.13 -1.17 5.36 -26.61 -0.14 -1.32 16 16 C -0.10 -0.96 2.35 -90.58 -0.21 -1.17 16 17 C 0.12 0.86 5.93 -4.04 -0.02 0.84 16 18 N -0.29 -2.88 3.44 -61.26 -0.21 -3.09 16 19 C -0.06 -0.45 11.57 -17.05 -0.20 -0.64 16 20 C -0.05 -0.53 12.05 -17.74 -0.21 -0.75 16 21 N -0.28 -3.88 12.41 30.23 0.38 -3.50 16 22 N -0.07 -1.02 10.22 60.35 0.62 -0.40 16 23 C -0.14 -1.84 5.10 -26.61 -0.14 -1.98 16 24 C 0.15 2.48 6.31 -3.71 -0.02 2.46 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 27 H 0.01 0.26 5.50 -51.93 -0.29 -0.03 16 28 H 0.41 5.19 8.97 45.56 0.41 5.59 16 29 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 30 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.19 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.10 1.37 5.43 -51.93 -0.28 1.09 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -36.48 337.00 -6.46 -42.94 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.17 Total: 2.59 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.09 Total: -0.46 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.62 Total: -58.91 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.23 Total: -8.29 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.48 -6.46 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331127685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.789 kcal (2) G-P(sol) polarization free energy of solvation -36.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds