Wall clock time and date at job start Fri Apr 10 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48504 * 109.46968 * 270.00305 * 3 2 1 5 5 H 1.48500 * 109.46976 * 29.99463 * 3 2 1 6 6 H 1.48498 * 109.47065 * 149.99871 * 3 2 1 7 7 C 1.37871 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00336 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.30107 * 119.99987 * 115.43729 * 10 9 7 12 12 O 1.35101 * 119.99732 * 185.30901 * 11 10 9 13 13 N 1.37339 * 119.99906 * 5.30839 * 11 10 9 14 14 C 1.46921 * 120.62980 * 85.13851 * 13 11 10 15 15 C 1.53187 * 108.77811 * 126.38770 * 14 13 11 16 16 C 1.53047 * 109.31152 * 54.63491 * 15 14 13 17 17 C 1.52998 * 109.46095 * 178.61487 * 16 15 14 18 18 N 1.46497 * 109.47368 * 184.99965 * 17 16 15 19 19 C 1.35311 * 125.87299 * 124.99660 * 18 17 16 20 20 C 1.35348 * 106.17687 * 180.02562 * 19 18 17 21 21 N 1.33768 * 106.49625 * 0.02562 * 20 19 18 22 22 N 1.28638 * 108.88687 * 359.72952 * 21 20 19 23 23 C 1.53040 * 109.53620 * 298.63501 * 16 15 14 24 24 C 1.46922 * 120.63078 * 265.13313 * 13 11 10 25 25 H 0.96999 * 120.00766 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47396 * 59.99572 * 9 7 2 27 27 H 1.09000 * 109.46841 * 299.99540 * 9 7 2 28 28 H 0.96701 * 114.00104 * 0.02562 * 12 11 10 29 29 H 1.09001 * 109.58953 * 6.60037 * 14 13 11 30 30 H 1.09004 * 109.58612 * 246.17404 * 14 13 11 31 31 H 1.09003 * 109.50064 * 294.68256 * 15 14 13 32 32 H 1.09000 * 109.49997 * 174.58307 * 15 14 13 33 33 H 1.08993 * 109.45817 * 58.65156 * 16 15 14 34 34 H 1.09004 * 109.46871 * 304.99995 * 17 16 15 35 35 H 1.09002 * 109.47219 * 64.99317 * 17 16 15 36 36 H 1.07997 * 126.90830 * 359.97438 * 19 18 17 37 37 H 1.08000 * 126.75323 * 179.97438 * 20 19 18 38 38 H 1.08995 * 109.49996 * 181.31526 * 23 16 15 39 39 H 1.09001 * 109.49634 * 301.41250 * 23 16 15 40 40 H 1.08998 * 109.58680 * 113.81952 * 24 13 11 41 41 H 1.09004 * 109.58629 * 353.40132 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 3.9999 -2.5751 0.0022 11 6 4.6735 -3.0277 -1.0147 12 8 5.0312 -4.3296 -1.0624 13 7 5.0207 -2.1821 -2.0397 14 6 6.2393 -1.3655 -1.9562 15 6 7.0888 -1.6183 -3.2056 16 6 6.2425 -1.3586 -4.4541 17 6 7.0976 -1.5766 -5.7039 18 7 6.3244 -1.2134 -6.8941 19 6 6.6993 -0.3237 -7.8421 20 6 5.6965 -0.2958 -8.7507 21 7 4.7691 -1.1580 -8.3194 22 7 5.1736 -1.6891 -7.2198 23 6 5.0533 -2.3216 -4.4756 24 6 4.1807 -2.0768 -3.2405 25 1 -0.4851 0.8400 -0.0004 26 1 3.8746 -0.6798 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 4.7421 -4.8453 -0.2972 29 1 6.8053 -1.6436 -1.0671 30 1 5.9695 -0.3106 -1.9050 31 1 7.4334 -2.6524 -3.2083 32 1 7.9483 -0.9479 -3.2029 33 1 5.8778 -0.3316 -4.4384 34 1 7.9903 -0.9537 -5.6465 35 1 7.3895 -2.6249 -5.7661 36 1 7.6143 0.2495 -7.8681 37 1 5.6531 0.3051 -9.6470 38 1 4.4640 -2.1520 -5.3767 39 1 5.4170 -3.3491 -4.4663 40 1 3.7430 -1.0801 -3.2940 41 1 3.3884 -2.8243 -3.1989 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331127685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:47 Heat of formation + Delta-G solvation = 70.314998 kcal Electronic energy + Delta-G solvation = -23933.116408 eV Core-core repulsion = 20464.450464 eV Total energy + Delta-G solvation = -3468.665944 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.12179 -40.65771 -38.81281 -36.61865 -35.60200 -34.37991 -32.90657 -32.21811 -31.71891 -29.88236 -28.38527 -25.25880 -24.41070 -24.05603 -23.32998 -22.40211 -21.78747 -20.48528 -19.09809 -18.46801 -18.37070 -17.72375 -17.12795 -16.51375 -16.18131 -15.88219 -15.51077 -15.48070 -15.09169 -14.81265 -14.67364 -14.63353 -14.33994 -14.06128 -13.91923 -13.38156 -13.10773 -12.93860 -12.57498 -12.52490 -12.28856 -12.20659 -12.12816 -11.83325 -11.78342 -11.46870 -11.39968 -10.95357 -10.92748 -10.44386 -10.23311 -9.83319 -9.06492 -8.35213 -6.39873 0.77038 1.28052 1.31797 1.42087 1.43708 1.58973 1.71113 1.90474 2.28989 2.98390 3.32613 3.48132 3.60187 3.72156 3.82993 4.08570 4.18950 4.25875 4.32021 4.40664 4.41479 4.44086 4.48182 4.69095 4.71320 4.79194 4.85729 4.91444 4.97140 5.05197 5.08536 5.16007 5.17961 5.40683 5.42776 5.50768 5.82114 6.02447 6.28375 6.38252 6.61783 6.71553 7.20705 7.45224 7.62937 8.82211 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.004544 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.722955 B = 6160.958771 C = 7102.124357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.021 0.979 9 C 0.187 3.813 10 N -0.603 5.603 11 C 0.552 3.448 12 O -0.490 6.490 13 N -0.671 5.671 14 C 0.138 3.862 15 C -0.110 4.110 16 C -0.090 4.090 17 C 0.118 3.882 18 N -0.287 5.287 19 C -0.033 4.033 20 C -0.072 4.072 21 N -0.326 5.326 22 N -0.123 5.123 23 C -0.128 4.128 24 C 0.152 3.848 25 H 0.269 0.731 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.421 0.579 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.238 0.762 37 H 0.212 0.788 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.940 0.831 -14.588 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.562 4.562 8 H 0.039 0.961 9 C 0.058 3.942 10 N -0.341 5.341 11 C 0.238 3.762 12 O -0.284 6.284 13 N -0.412 5.412 14 C 0.015 3.985 15 C -0.149 4.149 16 C -0.110 4.110 17 C -0.002 4.002 18 N -0.080 5.080 19 C -0.185 4.185 20 C -0.231 4.231 21 N -0.191 5.191 22 N -0.102 5.102 23 C -0.167 4.167 24 C 0.028 3.972 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.278 0.722 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.172 0.828 35 H 0.128 0.872 36 H 0.255 0.745 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 23.606 -0.261 -13.872 27.381 hybrid contribution -0.068 1.245 -0.115 1.252 sum 23.538 0.984 -13.987 27.398 Atomic orbital electron populations 1.70052 1.08272 1.28362 1.52142 1.25888 0.95663 1.03308 0.93900 0.85637 0.79507 0.77976 0.79387 1.18835 1.20247 1.17008 1.21201 0.91072 0.92947 1.50932 0.96066 1.19572 0.93275 0.85539 0.95820 1.72205 1.16277 1.20009 1.25607 1.20068 0.88567 0.83119 0.84451 1.84724 1.76232 1.17788 1.49701 1.46278 1.29464 1.45350 1.20087 1.21489 0.84065 0.93645 0.99296 1.21877 0.97717 1.04042 0.91303 1.21310 0.95592 0.99751 0.94309 1.22591 0.93716 1.05286 0.78587 1.47869 1.13852 1.27152 1.19173 1.24449 1.04721 0.98671 0.90641 1.24240 0.92020 1.02624 1.04171 1.75099 1.27069 1.11411 1.05509 1.78207 0.98840 1.22042 1.11088 1.22157 0.97505 0.99877 0.97180 1.21137 0.92288 0.99354 0.84446 0.92215 0.95870 0.96365 0.72207 0.90445 0.93077 0.90277 0.86851 0.91345 0.82804 0.87204 0.74529 0.77106 0.90048 0.91453 0.94643 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.50 13.96 21.44 0.30 -61.20 16 2 C 0.01 0.59 5.47 84.65 0.46 1.06 16 3 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.52 -32.46 9.94 25.60 0.25 -32.21 16 8 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 9 C 0.19 9.58 5.14 85.63 0.44 10.02 16 10 N -0.60 -27.77 10.48 -469.72 -4.92 -32.69 16 11 C 0.55 20.86 7.34 179.63 1.32 22.18 16 12 O -0.49 -15.25 13.62 -83.77 -1.14 -16.39 16 13 N -0.67 -22.17 1.55 -819.21 -1.27 -23.44 16 14 C 0.14 3.33 6.12 86.36 0.53 3.85 16 15 C -0.11 -1.56 5.36 30.67 0.16 -1.40 16 16 C -0.09 -1.52 2.35 -10.77 -0.03 -1.55 16 17 C 0.12 1.18 5.93 86.38 0.51 1.70 16 18 N -0.29 -4.93 3.44 -347.74 -1.20 -6.13 16 19 C -0.03 -0.40 11.57 83.49 0.97 0.56 16 20 C -0.07 -1.29 12.05 83.73 1.01 -0.28 16 21 N -0.33 -9.15 12.41 -58.26 -0.72 -9.87 16 22 N -0.12 -3.30 10.22 37.02 0.38 -2.92 16 23 C -0.13 -3.28 5.10 30.67 0.16 -3.12 16 24 C 0.15 5.22 6.31 86.36 0.54 5.77 16 25 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 26 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 27 H 0.02 0.91 5.50 -2.39 -0.01 0.89 16 28 H 0.42 10.39 8.97 -74.06 -0.66 9.73 16 29 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 30 H 0.05 1.30 8.07 -2.38 -0.02 1.28 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.15 0.12 8.07 -2.38 -0.02 0.10 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.24 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.08 2.40 5.43 -2.39 -0.01 2.38 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.77 7.93 -2.38 -0.02 1.75 16 Total: -1.00 -86.94 337.00 -0.03 -86.97 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.32 Total: 12.09 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 6.33 Total: 6.59 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -7.43 Total: -136.26 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -1.14 Total: -16.39 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -86.94 -0.03 -86.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331127685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.287 kcal (2) G-P(sol) polarization free energy of solvation -86.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds