Wall clock time and date at job start Fri Apr 10 2020 17:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30831 * 125.95974 * 2 1 4 4 C 1.33245 * 109.82625 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52582 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.49761 * 0.07625 * 5 4 3 7 7 C 1.53047 * 109.49089 * 120.16322 * 5 4 3 8 8 C 1.53045 * 109.53426 * 181.31861 * 7 5 4 9 9 C 1.53627 * 109.23941 * 298.51214 * 8 7 5 10 10 N 1.46923 * 108.54408 * 54.86025 * 9 8 7 11 11 C 1.34778 * 120.63191 * 126.36420 * 10 9 8 12 12 O 1.21586 * 120.00021 * 4.74573 * 11 10 9 13 13 N 1.34775 * 119.99817 * 184.46777 * 11 10 9 14 14 C 1.46507 * 120.00024 * 175.20268 * 13 11 10 15 15 C 1.50693 * 109.47225 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00211 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00361 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99578 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46943 * 90.00040 * 19 17 15 21 21 H 1.48497 * 109.46936 * 210.00322 * 19 17 15 22 22 H 1.48502 * 109.47058 * 330.00312 * 19 17 15 23 23 C 1.46932 * 118.73700 * 306.08979 * 10 9 8 24 24 N 1.30714 * 108.94420 * 0.26694 * 4 3 2 25 25 N 1.34423 * 125.95989 * 179.97438 * 2 1 3 26 26 H 0.97005 * 126.82581 * 0.02699 * 25 2 1 27 27 H 1.09003 * 109.46960 * 89.99825 * 1 2 3 28 28 H 1.08998 * 109.46831 * 210.00108 * 1 2 3 29 29 H 1.08997 * 109.46627 * 330.00466 * 1 2 3 30 30 H 1.08994 * 109.46139 * 301.33869 * 7 5 4 31 31 H 1.08996 * 109.45719 * 61.31476 * 7 5 4 32 32 H 1.09000 * 109.49687 * 58.58999 * 8 7 5 33 33 H 1.08995 * 109.49616 * 178.65402 * 8 7 5 34 34 H 1.08991 * 109.74373 * 295.11560 * 9 8 7 35 35 H 1.09005 * 109.66060 * 174.54672 * 9 8 7 36 36 H 0.97002 * 120.00445 * 355.21036 * 13 11 10 37 37 H 1.09000 * 109.47128 * 300.00363 * 14 13 11 38 38 H 1.08997 * 109.46697 * 59.99902 * 14 13 11 39 39 H 0.97001 * 120.00240 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.58363 * 173.64770 * 23 10 9 41 41 H 1.08992 * 109.58902 * 293.93181 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6236 0.0002 6 1 4.3853 2.6551 0.0008 7 6 5.5872 1.3726 1.2480 8 6 6.7699 2.3438 1.2654 9 6 7.6452 2.0979 0.0270 10 7 6.7997 2.1988 -1.1703 11 6 7.1334 3.0282 -2.1788 12 8 8.1853 3.6370 -2.1424 13 7 6.3038 3.1786 -3.2303 14 6 6.6151 4.1575 -4.2749 15 6 5.5374 4.1285 -5.3278 16 1 4.7041 3.4486 -5.2290 17 6 5.6157 4.9692 -6.4178 18 7 4.6749 4.9442 -7.3364 19 14 7.0574 6.1446 -6.5890 20 1 8.1532 5.4781 -7.3374 21 1 6.6217 7.3583 -7.3255 22 1 7.5433 6.5318 -5.2402 23 6 5.5865 1.3737 -1.2500 24 7 3.6194 -0.6168 -0.0048 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0147 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 4.9784 1.5259 2.1389 31 1 5.9591 0.3481 1.2340 32 1 6.3992 3.3688 1.2542 33 1 7.3614 2.1806 2.1662 34 1 8.0866 1.1027 0.0799 35 1 8.4347 2.8481 -0.0190 36 1 5.5005 2.6388 -3.2954 37 1 6.6667 5.1537 -3.8356 38 1 7.5745 3.9108 -4.7296 39 1 4.7298 5.5359 -8.1031 40 1 5.0172 1.6459 -2.1388 41 1 5.8634 0.3208 -1.3017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426433573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:25 Heat of formation + Delta-G solvation = 27.165690 kcal Electronic energy + Delta-G solvation = -23509.215101 eV Core-core repulsion = 20038.678063 eV Total energy + Delta-G solvation = -3470.537039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.22370 -41.39238 -38.75850 -36.26863 -34.89128 -34.52877 -33.36072 -33.31992 -31.79108 -29.80892 -28.76045 -26.39131 -25.36473 -24.14939 -22.63547 -21.96257 -21.25758 -20.56083 -19.61644 -18.81903 -18.41998 -17.39223 -16.75935 -16.62726 -16.43471 -15.63732 -15.56353 -15.46415 -15.17368 -14.79441 -14.64280 -14.54428 -14.38835 -13.80384 -13.71477 -13.65053 -13.41759 -13.01150 -12.78743 -12.69462 -12.45201 -12.10207 -11.90950 -11.86211 -11.73886 -11.62821 -11.28199 -11.08608 -11.03677 -10.91558 -10.47511 -10.13165 -9.47217 -8.39700 -6.46982 0.55740 1.34559 1.35532 1.49879 1.61543 1.73401 1.85281 2.14071 2.29612 2.83172 2.95765 3.14170 3.48864 3.70013 3.78365 3.92207 4.03429 4.17164 4.22975 4.40726 4.53639 4.67368 4.70670 4.70936 4.77119 4.87021 4.95084 5.02035 5.04781 5.06647 5.09809 5.22116 5.24092 5.31869 5.39389 5.52071 5.57874 5.89644 6.18007 6.21650 6.53384 7.03464 7.08446 7.18036 7.58956 8.75332 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.004214 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.904713 B = 6642.816956 C = 8272.802366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.577 5.577 4 C 0.229 3.771 5 C -0.004 4.004 6 H 0.089 0.911 7 C -0.096 4.096 8 C -0.122 4.122 9 C 0.122 3.878 10 N -0.624 5.624 11 C 0.698 3.302 12 O -0.636 6.636 13 N -0.726 5.726 14 C 0.251 3.749 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.029 3.971 18 N -0.931 5.931 19 Si 0.940 3.060 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.260 1.260 23 C 0.129 3.871 24 N -0.327 5.327 25 N -0.473 5.473 26 H 0.456 0.544 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.399 0.601 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.273 0.727 40 H 0.068 0.932 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -14.250 20.858 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 N -0.307 5.307 4 C -0.055 4.055 5 C -0.026 4.026 6 H 0.107 0.893 7 C -0.134 4.134 8 C -0.161 4.161 9 C 0.000 4.000 10 N -0.361 5.361 11 C 0.400 3.600 12 O -0.519 6.519 13 N -0.381 5.381 14 C 0.127 3.873 15 C -0.585 4.585 16 H 0.071 0.929 17 C -0.172 4.172 18 N -0.570 5.570 19 Si 0.763 3.237 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.184 1.184 23 C 0.004 3.996 24 N -0.157 5.157 25 N -0.194 5.194 26 H 0.305 0.695 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.688 -13.754 20.689 25.487 hybrid contribution -0.417 -0.217 -0.781 0.912 sum -6.105 -13.971 19.908 25.076 Atomic orbital electron populations 1.20647 0.80329 1.06635 1.05877 1.25200 0.98227 0.82072 0.93629 1.70392 1.01892 1.31531 1.26885 1.24002 0.93148 0.90230 0.98076 1.19847 0.88889 0.96668 0.97182 0.89289 1.21469 0.95963 1.00699 0.95293 1.21971 0.96628 0.99489 0.97979 1.21788 0.93034 1.02961 0.82214 1.47256 1.26611 1.43642 1.18633 1.16098 0.83242 0.80108 0.80578 1.90811 1.25911 1.53948 1.81183 1.45378 1.26598 1.43169 1.22966 1.18972 0.95358 0.87561 0.85377 1.21239 1.08195 1.23041 1.06071 0.92863 1.25584 0.98757 0.98199 0.94639 1.69979 1.35251 1.39859 1.11891 0.85822 0.79531 0.78987 0.79345 1.18905 1.19549 1.18406 1.21557 0.84965 0.95702 0.97327 1.77869 0.98399 1.11936 1.27456 1.47938 1.03343 1.10956 1.57127 0.69500 0.87821 0.86523 0.88248 0.90611 0.90230 0.92163 0.87255 0.89734 0.90397 0.76372 0.97002 0.97138 0.91765 0.91400 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.51 71.24 0.75 0.19 16 2 C 0.29 5.09 8.24 138.23 1.14 6.23 16 3 N -0.58 -15.02 11.19 -179.72 -2.01 -17.03 16 4 C 0.23 5.88 6.65 138.63 0.92 6.80 16 5 C 0.00 -0.09 2.81 -11.46 -0.03 -0.12 16 6 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 7 C -0.10 -1.83 5.15 30.63 0.16 -1.67 16 8 C -0.12 -2.31 6.10 30.82 0.19 -2.12 16 9 C 0.12 3.05 6.45 86.51 0.56 3.61 16 10 N -0.62 -19.91 2.97 -836.07 -2.48 -22.39 16 11 C 0.70 29.71 8.30 179.05 1.49 31.19 16 12 O -0.64 -31.42 15.78 -3.99 -0.06 -31.48 16 13 N -0.73 -32.78 5.46 -482.30 -2.63 -35.41 16 14 C 0.25 13.21 4.50 85.63 0.39 13.59 16 15 C -0.55 -31.76 9.83 25.60 0.25 -31.51 16 16 H 0.05 3.27 7.84 -2.91 -0.02 3.25 16 17 C 0.03 1.66 5.47 84.66 0.46 2.13 16 18 N -0.93 -56.91 13.96 21.45 0.30 -56.61 16 19 Si 0.94 45.36 27.47 68.60 1.88 47.25 16 20 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -12.48 6.54 99.48 0.65 -11.83 16 23 C 0.13 3.57 5.69 86.36 0.49 4.07 16 24 N -0.33 -7.65 12.80 -51.33 -0.66 -8.30 16 25 N -0.47 -7.70 7.45 -50.70 -0.38 -8.08 16 26 H 0.46 3.63 8.96 -213.09 -1.91 1.72 16 27 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.26 7.03 -2.38 -0.02 2.24 16 36 H 0.40 16.64 5.78 -92.71 -0.54 16.10 16 37 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 38 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.07 2.10 5.57 -2.38 -0.01 2.08 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -79.57 337.19 -0.71 -80.28 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -1.43 Total: 19.40 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 6.76 Total: 32.37 kcal Atomic # 7 Polarization: -139.96 SS G_CDS: -7.86 Total: -147.82 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -79.57 -0.71 -80.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.446 kcal (2) G-P(sol) polarization free energy of solvation -79.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds