Wall clock time and date at job start Fri Apr 10 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30828 * 125.96163 * 2 1 4 4 C 1.33247 * 109.83188 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52863 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.52287 * 0.07764 * 5 4 3 7 7 C 1.53046 * 109.49673 * 239.99685 * 5 4 3 8 8 C 1.53035 * 109.53886 * 178.68200 * 7 5 4 9 9 C 1.53199 * 109.31016 * 61.36695 * 8 7 5 10 10 N 1.46922 * 108.77517 * 305.35998 * 9 8 7 11 11 C 1.34773 * 120.63802 * 233.58904 * 10 9 8 12 12 O 1.21593 * 119.99276 * 354.96377 * 11 10 9 13 13 N 1.34773 * 120.00757 * 174.96833 * 11 10 9 14 14 C 1.46501 * 120.00474 * 185.07523 * 13 11 10 15 15 C 1.50695 * 109.47359 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99715 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00494 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47123 * 59.99726 * 19 17 15 21 21 H 1.48496 * 109.47408 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47007 * 300.00288 * 19 17 15 23 23 C 1.46930 * 118.73587 * 53.61202 * 10 9 8 24 24 N 1.30722 * 108.94333 * 0.25763 * 4 3 2 25 25 N 1.34435 * 125.96046 * 180.02562 * 2 1 3 26 26 H 0.97001 * 126.82316 * 359.97244 * 25 2 1 27 27 H 1.09003 * 109.46703 * 90.00821 * 1 2 3 28 28 H 1.08999 * 109.47044 * 210.00056 * 1 2 3 29 29 H 1.08995 * 109.47415 * 330.00448 * 1 2 3 30 30 H 1.09002 * 109.45724 * 298.70275 * 7 5 4 31 31 H 1.09004 * 109.45824 * 58.66324 * 7 5 4 32 32 H 1.08995 * 109.49624 * 181.31563 * 8 7 5 33 33 H 1.08997 * 109.49976 * 301.38527 * 8 7 5 34 34 H 1.08990 * 109.58625 * 65.15373 * 9 8 7 35 35 H 1.08997 * 109.58413 * 185.58031 * 9 8 7 36 36 H 0.97001 * 119.99785 * 5.06661 * 13 11 10 37 37 H 1.08998 * 109.46823 * 300.00087 * 14 13 11 38 38 H 1.09004 * 109.46977 * 59.99105 * 14 13 11 39 39 H 0.96996 * 120.00649 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.58579 * 186.60087 * 23 10 9 41 41 H 1.09003 * 109.58758 * 66.17897 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0002 6 1 4.3856 2.6554 0.0020 7 6 5.5851 1.3755 -1.2499 8 6 6.7677 2.3467 -1.2672 9 6 7.6422 2.1021 -0.0333 10 7 6.8017 2.1962 1.1681 11 6 7.1371 3.0233 2.1779 12 8 8.1892 3.6317 2.1413 13 7 6.3065 3.1761 3.2282 14 6 6.6170 4.1570 4.2711 15 6 5.5381 4.1305 5.3229 16 1 4.7043 3.4511 5.2242 17 6 5.6156 4.9734 6.4112 18 7 6.6311 5.8002 6.5317 19 14 4.2779 4.9410 7.7148 20 1 4.2050 3.5849 8.3157 21 1 4.5933 5.9343 8.7726 22 1 2.9722 5.2774 7.0925 23 6 5.5887 1.3709 1.2480 24 7 3.6195 -0.6169 -0.0065 25 7 2.2965 -1.0881 -0.0005 26 1 2.0093 -2.0147 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 5.9568 0.3509 -1.2390 31 1 4.9747 1.5308 -2.1396 32 1 7.3579 2.1852 -2.1692 33 1 6.3970 3.3716 -1.2536 34 1 8.0866 1.1087 -0.0916 35 1 8.4293 2.8548 0.0116 36 1 5.5030 2.6366 3.2936 37 1 7.5758 3.9111 4.7273 38 1 6.6693 5.1523 3.8297 39 1 6.6854 6.3935 7.2972 40 1 5.0209 1.6410 2.1384 41 1 5.8657 0.3177 1.2943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426433574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:27 Heat of formation + Delta-G solvation = 23.698442 kcal Electronic energy + Delta-G solvation = -23478.492723 eV Core-core repulsion = 20007.805333 eV Total energy + Delta-G solvation = -3470.687390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.21428 -41.36225 -38.73891 -36.24329 -34.88218 -34.50336 -33.35073 -33.24123 -31.77893 -29.26551 -28.74773 -26.40449 -25.36938 -24.54010 -22.66389 -21.94504 -21.21188 -20.49881 -19.59811 -18.79995 -18.05724 -17.38134 -16.75359 -16.59046 -16.50742 -15.64469 -15.55398 -15.42920 -15.06392 -14.75762 -14.63783 -14.44168 -14.06389 -13.71090 -13.69955 -13.62435 -13.40389 -12.91239 -12.77948 -12.68712 -12.44762 -12.24906 -12.04568 -11.85323 -11.73426 -11.49723 -11.24719 -11.07031 -11.02527 -10.79600 -10.46369 -10.05488 -9.42348 -8.28069 -6.44934 0.56712 1.42009 1.47080 1.54820 1.63896 1.74359 1.86833 2.18271 2.38346 2.86594 3.06311 3.18805 3.49662 3.71414 3.79094 3.92742 4.03639 4.17951 4.23574 4.41367 4.54021 4.70875 4.72078 4.74427 4.81643 4.94379 5.01780 5.06078 5.07522 5.11063 5.24046 5.26961 5.31952 5.39159 5.46645 5.54935 5.72181 5.84428 6.07272 6.22693 6.65286 7.09227 7.12782 7.24813 7.65710 8.84174 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.004436 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.321202 B = 6310.900379 C = 8299.253996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.287 3.713 3 N -0.576 5.576 4 C 0.230 3.770 5 C -0.004 4.004 6 H 0.088 0.912 7 C -0.096 4.096 8 C -0.123 4.123 9 C 0.122 3.878 10 N -0.625 5.625 11 C 0.695 3.305 12 O -0.642 6.642 13 N -0.726 5.726 14 C 0.286 3.714 15 C -0.557 4.557 16 H 0.078 0.922 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.985 3.015 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.129 3.871 24 N -0.327 5.327 25 N -0.474 5.474 26 H 0.456 0.544 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.399 0.601 37 H -0.013 1.013 38 H -0.013 1.013 39 H 0.270 0.730 40 H 0.071 0.929 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 -17.207 -17.842 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.009 3.991 3 N -0.306 5.306 4 C -0.053 4.053 5 C -0.026 4.026 6 H 0.107 0.893 7 C -0.134 4.134 8 C -0.161 4.161 9 C -0.001 4.001 10 N -0.362 5.362 11 C 0.396 3.604 12 O -0.524 6.524 13 N -0.382 5.382 14 C 0.163 3.837 15 C -0.595 4.595 16 H 0.096 0.904 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.187 1.187 23 C 0.005 3.995 24 N -0.156 5.156 25 N -0.194 5.194 26 H 0.305 0.695 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.236 0.764 37 H 0.005 0.995 38 H 0.005 0.995 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.621 -16.651 -17.743 27.411 hybrid contribution -0.822 -0.357 0.954 1.309 sum -13.443 -17.008 -16.788 27.420 Atomic orbital electron populations 1.20646 0.80292 1.06437 1.06092 1.25204 0.98217 0.82039 0.93620 1.70390 1.01828 1.31524 1.26890 1.23953 0.93098 0.90189 0.98100 1.19840 0.88934 0.96697 0.97145 0.89329 1.21465 0.95911 1.00631 0.95389 1.21894 0.96743 0.99515 0.97921 1.21672 0.93180 1.02833 0.82366 1.47258 1.26861 1.43892 1.18207 1.16198 0.83336 0.80066 0.80780 1.90818 1.26296 1.54055 1.81238 1.45551 1.26250 1.43107 1.23266 1.18420 0.95320 0.85582 0.84370 1.21514 1.08330 1.22928 1.06748 0.90440 1.26032 0.98646 0.94070 1.00508 1.70126 1.32039 1.23382 1.31166 0.85215 0.78309 0.78417 0.77315 1.18772 1.20690 1.18690 1.21573 0.84866 0.95620 0.97435 1.77885 0.98406 1.11922 1.27430 1.47945 1.03326 1.10967 1.57143 0.69504 0.87086 0.86876 0.88594 0.90182 0.90548 0.87252 0.92316 0.89763 0.90860 0.76406 0.99535 0.99509 0.92130 0.91114 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.29 4.79 8.24 138.23 1.14 5.92 16 3 N -0.58 -14.45 11.19 -179.72 -2.01 -16.46 16 4 C 0.23 5.78 6.65 138.63 0.92 6.70 16 5 C 0.00 -0.10 2.81 -11.46 -0.03 -0.13 16 6 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 7 C -0.10 -1.88 5.15 30.62 0.16 -1.73 16 8 C -0.12 -2.49 6.08 30.67 0.19 -2.30 16 9 C 0.12 3.29 6.42 86.37 0.55 3.85 16 10 N -0.62 -21.09 2.97 -836.91 -2.49 -23.58 16 11 C 0.69 31.84 8.30 179.06 1.49 33.33 16 12 O -0.64 -34.95 15.79 -4.01 -0.06 -35.02 16 13 N -0.73 -34.62 5.46 -482.30 -2.63 -37.25 16 14 C 0.29 16.75 5.43 85.63 0.47 17.21 16 15 C -0.56 -31.86 9.28 25.60 0.24 -31.62 16 16 H 0.08 4.07 7.60 -2.91 -0.02 4.04 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -57.38 13.29 21.44 0.28 -57.10 16 19 Si 0.98 43.49 29.54 68.60 2.03 45.52 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C 0.13 3.63 5.70 86.36 0.49 4.13 16 24 N -0.33 -7.44 12.80 -51.33 -0.66 -8.09 16 25 N -0.47 -7.28 7.45 -50.70 -0.38 -7.66 16 26 H 0.46 3.24 8.96 -213.09 -1.91 1.33 16 27 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.34 7.03 -2.39 -0.02 2.32 16 36 H 0.40 16.63 5.78 -92.71 -0.54 16.09 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.07 2.15 5.57 -2.38 -0.01 2.14 16 41 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -82.50 340.76 -0.48 -82.98 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -1.38 Total: 20.14 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: 6.82 Total: 36.52 kcal Atomic # 7 Polarization: -142.26 SS G_CDS: -7.88 Total: -150.14 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -82.50 -0.48 -82.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.679 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds