Wall clock time and date at job start Fri Apr 10 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00111 * 2 1 4 4 C 1.52992 * 109.47162 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47259 * 64.99896 * 4 3 2 6 6 C 1.46497 * 120.00463 * 270.00419 * 5 4 3 7 7 C 1.50699 * 109.46966 * 270.00119 * 6 5 4 8 8 H 1.07998 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99482 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00084 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47081 * 90.00299 * 11 9 7 13 13 H 1.48499 * 109.46957 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.47068 * 329.99978 * 11 9 7 15 15 C 1.34776 * 119.99735 * 89.99776 * 5 4 3 16 16 O 1.21282 * 119.99940 * 0.02562 * 15 5 4 17 17 C 1.50698 * 120.00035 * 179.97438 * 15 5 4 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 5 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 15 20 20 N 1.31789 * 119.12548 * 269.73113 * 19 18 17 21 21 C 1.32336 * 120.81931 * 179.75894 * 20 19 18 22 22 C 1.38605 * 119.09989 * 0.50454 * 21 20 19 23 23 C 1.38595 * 118.40130 * 359.75430 * 22 21 20 24 24 N 1.31797 * 119.11722 * 89.99981 * 19 18 17 25 25 H 1.08997 * 109.47331 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47126 * 299.99645 * 1 2 3 28 28 H 1.09004 * 109.46629 * 59.99927 * 3 2 1 29 29 H 1.08998 * 109.47018 * 300.00615 * 3 2 1 30 30 H 1.09004 * 109.47395 * 305.00332 * 4 3 2 31 31 H 1.08998 * 109.47295 * 185.00026 * 4 3 2 32 32 H 1.09000 * 109.47065 * 29.99364 * 6 5 4 33 33 H 1.08990 * 109.47304 * 149.99656 * 6 5 4 34 34 H 0.97004 * 119.99288 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46665 * 60.00498 * 17 15 5 36 36 H 1.08993 * 109.47304 * 300.00054 * 17 15 5 37 37 H 1.09001 * 109.46801 * 300.00442 * 18 17 15 38 38 H 1.09001 * 109.46998 * 60.00038 * 18 17 15 39 39 H 1.07994 * 120.45007 * 180.23609 * 21 20 19 40 40 H 1.08003 * 120.79657 * 179.77264 * 22 21 20 41 41 H 1.07999 * 120.44652 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3429 7 6 5.5008 -1.2979 -0.9450 8 1 6.2197 -0.5461 -0.6545 9 6 5.8604 -2.6289 -0.9529 10 7 7.0787 -2.9829 -0.6061 11 14 4.6174 -3.9293 -1.4561 12 1 4.7020 -4.1542 -2.9215 13 1 4.9121 -5.1979 -0.7427 14 1 3.2500 -3.4694 -1.1039 15 6 4.2614 1.3337 -2.3218 16 8 4.1546 2.5395 -2.2471 17 6 4.7148 0.6958 -3.6096 18 6 4.9715 1.7833 -4.6548 19 6 5.4243 1.1454 -5.9428 20 7 6.7124 0.9543 -6.1458 21 6 7.1467 0.3927 -7.2627 22 6 6.2276 0.0142 -8.2286 23 6 4.8821 0.2362 -7.9811 24 7 4.5219 0.7983 -6.8385 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3630 -0.6735 33 1 3.9119 -1.2113 -2.3669 34 1 7.3315 -3.9194 -0.6113 35 1 3.9411 0.0188 -3.9717 36 1 5.6339 0.1368 -3.4343 37 1 4.0526 2.3428 -4.8302 38 1 5.7453 2.4601 -4.2924 39 1 8.2033 0.2355 -7.4212 40 1 6.5520 -0.4431 -9.1517 41 1 4.1376 -0.0462 -8.7108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589703640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:10 Heat of formation + Delta-G solvation = -33.851045 kcal Electronic energy + Delta-G solvation = -23573.206149 eV Core-core repulsion = 20067.730475 eV Total energy + Delta-G solvation = -3505.475674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.97525 -39.27740 -37.48620 -35.02507 -34.02292 -33.65845 -32.51991 -31.01124 -29.72624 -27.56351 -26.24088 -25.25980 -24.51895 -22.74562 -22.45279 -21.42321 -18.24097 -17.50994 -17.13086 -17.01736 -16.46654 -15.97899 -15.72753 -15.26159 -15.12697 -14.94556 -14.62941 -14.32668 -14.06977 -13.57627 -13.35947 -12.83849 -12.59388 -12.50736 -12.08268 -11.93345 -11.74368 -11.58269 -11.45299 -10.96129 -10.83736 -10.80357 -10.76307 -10.63635 -10.49524 -10.18239 -9.56241 -9.53161 -9.45984 -9.18259 -9.03428 -8.64204 -7.70504 -6.14704 -4.15070 0.89657 1.11615 3.23059 3.31407 3.35326 3.36233 3.66057 3.89002 4.05940 4.13131 4.20738 4.34279 4.57142 4.95273 5.07629 5.16208 5.21710 5.32734 5.41019 5.47537 5.49881 5.54902 5.60201 5.65767 5.70564 5.76838 5.77509 6.00455 6.12868 6.30562 6.35334 6.43090 6.53017 6.62920 6.89980 7.03478 7.36790 7.42838 7.55154 8.16758 8.19113 8.47741 8.87748 8.96339 9.45639 10.98022 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.005414 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.681797 B = 5170.497119 C = 6536.561387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.047 3.953 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.210 3.790 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.893 5.893 11 Si 0.868 3.132 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.259 1.259 15 C 0.523 3.477 16 O -0.575 6.575 17 C -0.128 4.128 18 C -0.036 4.036 19 C 0.330 3.670 20 N -0.511 5.511 21 C 0.151 3.849 22 C -0.242 4.242 23 C 0.147 3.853 24 N -0.518 5.518 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 5.312 -10.222 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.311 5.311 6 C 0.089 3.911 7 C -0.577 4.577 8 H 0.096 0.904 9 C -0.127 4.127 10 N -0.531 5.531 11 Si 0.694 3.306 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.312 3.688 16 O -0.457 6.457 17 C -0.168 4.168 18 C -0.075 4.075 19 C 0.063 3.937 20 N -0.224 5.224 21 C -0.016 4.016 22 C -0.264 4.264 23 C -0.020 4.020 24 N -0.232 5.232 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.605 6.006 -9.287 13.422 hybrid contribution -0.367 -1.336 -1.170 1.814 sum -7.972 4.670 -10.457 13.954 Atomic orbital electron populations 1.22684 0.82120 1.02306 0.99358 1.88018 1.18736 1.27824 1.95255 1.23059 0.95312 0.84718 0.99946 1.21358 0.90873 0.99911 0.88061 1.47813 1.63976 1.08958 1.10378 1.19850 0.98201 0.75540 0.97509 1.21427 0.96024 0.93714 1.46551 0.90406 1.24849 0.95028 0.98284 0.94530 1.69904 1.18112 1.17374 1.47691 0.86964 0.82816 0.81748 0.79060 1.20163 1.20975 1.18363 1.20301 0.76486 0.86559 0.85451 1.90590 1.55810 1.14566 1.84746 1.21513 1.04658 0.98424 0.92239 1.20179 1.03181 0.97103 0.87046 1.23360 0.84657 0.90631 0.95015 1.68347 1.17887 1.14260 1.21920 1.23288 1.00948 0.89448 0.87891 1.22874 0.95883 1.04909 1.02701 1.23224 0.94931 0.90424 0.93386 1.68309 1.39551 1.12495 1.02828 0.94549 0.90014 0.94559 0.93036 0.93227 0.89297 0.89104 0.93467 0.95701 0.92511 0.89285 0.87144 0.88867 0.88475 0.81552 0.83728 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.51 9.53 -35.23 -0.34 -6.84 16 3 C 0.05 0.75 6.28 37.15 0.23 0.99 16 4 C 0.12 2.23 5.81 -4.04 -0.02 2.20 16 5 N -0.58 -12.23 2.42 -175.07 -0.42 -12.66 16 6 C 0.21 4.87 3.85 -5.20 -0.02 4.85 16 7 C -0.54 -14.59 9.83 -34.44 -0.34 -14.93 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 11 Si 0.87 20.64 27.47 -169.99 -4.67 15.97 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 15 C 0.52 10.81 7.67 -10.99 -0.08 10.73 16 16 O -0.58 -12.45 15.56 5.56 0.09 -12.36 16 17 C -0.13 -2.41 4.24 -27.88 -0.12 -2.53 16 18 C -0.04 -0.60 4.94 -27.88 -0.14 -0.74 16 19 C 0.33 5.39 6.90 -157.20 -1.08 4.30 16 20 N -0.51 -8.16 10.33 -10.73 -0.11 -8.27 16 21 C 0.15 1.83 11.31 -17.20 -0.19 1.63 16 22 C -0.24 -2.43 10.17 -39.31 -0.40 -2.83 16 23 C 0.15 1.67 11.30 -17.20 -0.19 1.48 16 24 N -0.52 -7.79 10.33 -10.73 -0.11 -7.91 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 31 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 32 H 0.05 1.12 6.17 -51.93 -0.32 0.80 16 33 H 0.03 0.57 5.87 -51.93 -0.30 0.26 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.62 7.40 -51.93 -0.38 1.24 16 36 H 0.11 2.31 8.00 -51.93 -0.42 1.89 16 37 H 0.09 1.52 8.10 -51.93 -0.42 1.09 16 38 H 0.10 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -33.46 349.53 -6.91 -40.37 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.04 Total: 3.52 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.35 Total: 8.70 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.13 Total: -54.62 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.25 Total: -19.20 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.46 -6.91 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.517 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds