Wall clock time and date at job start Fri Apr 10 2020 17:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00111 * 2 1 4 4 C 1.52992 * 109.47162 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47259 * 64.99896 * 4 3 2 6 6 C 1.46497 * 120.00463 * 270.00419 * 5 4 3 7 7 C 1.50699 * 109.46966 * 270.00119 * 6 5 4 8 8 H 1.07998 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99482 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 120.00084 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47081 * 90.00299 * 11 9 7 13 13 H 1.48499 * 109.46957 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.47068 * 329.99978 * 11 9 7 15 15 C 1.34776 * 119.99735 * 89.99776 * 5 4 3 16 16 O 1.21282 * 119.99940 * 0.02562 * 15 5 4 17 17 C 1.50698 * 120.00035 * 179.97438 * 15 5 4 18 18 C 1.53006 * 109.47184 * 180.02562 * 17 15 5 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 15 20 20 N 1.31789 * 119.12548 * 269.73113 * 19 18 17 21 21 C 1.32336 * 120.81931 * 179.75894 * 20 19 18 22 22 C 1.38605 * 119.09989 * 0.50454 * 21 20 19 23 23 C 1.38595 * 118.40130 * 359.75430 * 22 21 20 24 24 N 1.31797 * 119.11722 * 89.99981 * 19 18 17 25 25 H 1.08997 * 109.47331 * 59.99747 * 1 2 3 26 26 H 1.09001 * 109.47643 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47126 * 299.99645 * 1 2 3 28 28 H 1.09004 * 109.46629 * 59.99927 * 3 2 1 29 29 H 1.08998 * 109.47018 * 300.00615 * 3 2 1 30 30 H 1.09004 * 109.47395 * 305.00332 * 4 3 2 31 31 H 1.08998 * 109.47295 * 185.00026 * 4 3 2 32 32 H 1.09000 * 109.47065 * 29.99364 * 6 5 4 33 33 H 1.08990 * 109.47304 * 149.99656 * 6 5 4 34 34 H 0.97004 * 119.99288 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46665 * 60.00498 * 17 15 5 36 36 H 1.08993 * 109.47304 * 300.00054 * 17 15 5 37 37 H 1.09001 * 109.46801 * 300.00442 * 18 17 15 38 38 H 1.09001 * 109.46998 * 60.00038 * 18 17 15 39 39 H 1.07994 * 120.45007 * 180.23609 * 21 20 19 40 40 H 1.08003 * 120.79657 * 179.77264 * 22 21 20 41 41 H 1.07999 * 120.44652 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3429 7 6 5.5008 -1.2979 -0.9450 8 1 6.2197 -0.5461 -0.6545 9 6 5.8604 -2.6289 -0.9529 10 7 7.0787 -2.9829 -0.6061 11 14 4.6174 -3.9293 -1.4561 12 1 4.7020 -4.1542 -2.9215 13 1 4.9121 -5.1979 -0.7427 14 1 3.2500 -3.4694 -1.1039 15 6 4.2614 1.3337 -2.3218 16 8 4.1546 2.5395 -2.2471 17 6 4.7148 0.6958 -3.6096 18 6 4.9715 1.7833 -4.6548 19 6 5.4243 1.1454 -5.9428 20 7 6.7124 0.9543 -6.1458 21 6 7.1467 0.3927 -7.2627 22 6 6.2276 0.0142 -8.2286 23 6 4.8821 0.2362 -7.9811 24 7 4.5219 0.7983 -6.8385 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9785 2.1765 0.0889 32 1 3.3852 -1.3630 -0.6735 33 1 3.9119 -1.2113 -2.3669 34 1 7.3315 -3.9194 -0.6113 35 1 3.9411 0.0188 -3.9717 36 1 5.6339 0.1368 -3.4343 37 1 4.0526 2.3428 -4.8302 38 1 5.7453 2.4601 -4.2924 39 1 8.2033 0.2355 -7.4212 40 1 6.5520 -0.4431 -9.1517 41 1 4.1376 -0.0462 -8.7108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589703640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:10 Heat of formation + Delta-G solvation = -56.874952 kcal Electronic energy + Delta-G solvation = -23574.204541 eV Core-core repulsion = 20067.730475 eV Total energy + Delta-G solvation = -3506.474066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.99514 -40.89612 -38.74857 -36.72425 -35.29900 -34.67219 -34.56357 -32.30183 -31.14638 -29.39050 -27.37615 -26.52528 -25.45724 -24.41401 -23.99046 -22.71738 -19.90602 -19.11446 -18.53715 -18.42797 -17.58311 -17.48898 -17.00175 -16.77084 -16.31531 -16.12645 -15.95353 -15.77282 -15.56802 -14.88995 -14.53825 -14.39804 -14.16821 -13.86238 -13.79500 -13.46405 -13.16122 -13.05220 -12.75370 -12.66488 -12.49326 -12.16124 -12.05564 -11.93426 -11.84886 -11.76718 -11.68975 -10.89317 -10.77005 -10.56169 -10.38884 -10.20229 -9.43979 -8.30707 -6.36673 -0.07979 0.19263 1.35867 1.38622 1.50101 1.68501 2.21381 2.33426 2.79757 2.92053 2.94442 3.03979 3.27570 3.72683 3.78572 4.04759 4.08984 4.15349 4.19139 4.24733 4.26771 4.39548 4.47789 4.54943 4.57659 4.61782 4.66288 4.77324 4.78918 4.85213 4.92030 5.00202 5.01831 5.06479 5.45981 5.48229 5.68263 6.09728 6.17186 6.28307 6.60201 6.69097 7.14601 7.21367 7.32289 8.85712 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.005414 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.681797 B = 5170.497119 C = 6536.561387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.114 3.886 5 N -0.588 5.588 6 C 0.226 3.774 7 C -0.539 4.539 8 H 0.032 0.968 9 C 0.020 3.980 10 N -0.941 5.941 11 Si 0.936 3.064 12 H -0.266 1.266 13 H -0.281 1.281 14 H -0.241 1.241 15 C 0.519 3.481 16 O -0.586 6.586 17 C -0.116 4.116 18 C -0.025 4.025 19 C 0.306 3.694 20 N -0.548 5.548 21 C 0.131 3.869 22 C -0.218 4.218 23 C 0.136 3.864 24 N -0.539 5.539 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.268 0.732 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.512 4.342 -12.250 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.019 4.019 4 C -0.009 4.009 5 N -0.318 5.318 6 C 0.104 3.896 7 C -0.577 4.577 8 H 0.050 0.950 9 C -0.179 4.179 10 N -0.581 5.581 11 Si 0.759 3.241 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.164 1.164 15 C 0.308 3.692 16 O -0.469 6.469 17 C -0.157 4.157 18 C -0.064 4.064 19 C 0.038 3.962 20 N -0.262 5.262 21 C -0.033 4.033 22 C -0.239 4.239 23 C -0.029 4.029 24 N -0.253 5.253 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.212 0.788 40 H 0.208 0.792 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.647 5.058 -11.321 15.710 hybrid contribution 0.347 -0.991 -0.589 1.204 sum -9.300 4.067 -11.910 15.649 Atomic orbital electron populations 1.22894 0.79834 1.03487 1.00729 1.87952 1.21283 1.28305 1.95530 1.22909 0.93046 0.84795 1.01199 1.21536 0.93229 0.99512 0.86613 1.47870 1.64168 1.08253 1.11466 1.19548 0.95479 0.76889 0.97711 1.21561 0.97134 0.92968 1.46075 0.94998 1.25732 0.96979 1.00720 0.94419 1.70055 1.20506 1.18095 1.49462 0.85876 0.80749 0.78413 0.79085 1.19050 1.20674 1.16395 1.20609 0.76139 0.86495 0.85939 1.90571 1.56287 1.14948 1.85045 1.21387 1.03321 0.98897 0.92116 1.19964 1.02839 0.96223 0.87398 1.23018 0.85283 0.92564 0.95285 1.68269 1.17978 1.15781 1.24197 1.23919 1.02942 0.89087 0.87395 1.23344 0.94810 1.02393 1.03314 1.23986 0.96762 0.89388 0.92786 1.68265 1.39632 1.13404 1.04018 0.93812 0.89016 0.92509 0.89888 0.93671 0.90198 0.88912 0.93232 0.94721 0.92307 0.88540 0.89750 0.88603 0.89825 0.78790 0.79170 0.77872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.36 9.53 -148.98 -1.42 -14.78 16 3 C 0.06 1.76 6.28 71.98 0.45 2.21 16 4 C 0.11 4.20 5.81 86.38 0.50 4.70 16 5 N -0.59 -25.11 2.42 -826.19 -2.00 -27.11 16 6 C 0.23 10.48 3.85 85.63 0.33 10.81 16 7 C -0.54 -30.12 9.83 25.60 0.25 -29.87 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 9 C 0.02 1.14 5.47 84.65 0.46 1.61 16 10 N -0.94 -57.57 13.96 21.45 0.30 -57.27 16 11 Si 0.94 42.21 27.47 68.60 1.88 44.10 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 15 C 0.52 21.94 7.67 87.66 0.67 22.61 16 16 O -0.59 -25.81 15.56 -3.04 -0.05 -25.86 16 17 C -0.12 -4.53 4.24 29.85 0.13 -4.40 16 18 C -0.02 -0.86 4.94 29.85 0.15 -0.72 16 19 C 0.31 10.07 6.90 138.75 0.96 11.02 16 20 N -0.55 -17.62 10.33 -187.85 -1.94 -19.56 16 21 C 0.13 2.97 11.31 84.70 0.96 3.92 16 22 C -0.22 -3.62 10.17 22.44 0.23 -3.39 16 23 C 0.14 2.71 11.30 84.70 0.96 3.67 16 24 N -0.54 -15.64 10.33 -187.85 -1.94 -17.58 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 3.04 8.07 -2.39 -0.02 3.02 16 31 H 0.09 3.33 7.42 -2.39 -0.02 3.31 16 32 H 0.05 2.31 6.17 -2.39 -0.01 2.29 16 33 H 0.03 1.55 5.87 -2.39 -0.01 1.54 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.10 3.55 7.40 -2.39 -0.02 3.53 16 36 H 0.08 3.73 8.00 -2.39 -0.02 3.71 16 37 H 0.10 3.20 8.10 -2.39 -0.02 3.18 16 38 H 0.08 3.05 8.10 -2.39 -0.02 3.03 16 39 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 41 H 0.20 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -75.25 349.53 3.09 -72.16 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.96 Total: 21.87 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.29 Total: 24.03 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.58 Total: -121.51 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.47 Total: -40.65 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Total: -75.25 3.09 -72.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589703640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.285 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds