Wall clock time and date at job start Fri Apr 10 2020 17:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47188 * 65.00463 * 4 3 2 6 6 C 1.37099 * 120.00047 * 269.99606 * 5 4 3 7 7 H 1.07995 * 120.00010 * 142.37958 * 6 5 4 8 8 C 1.38949 * 119.99858 * 322.38915 * 6 5 4 9 9 N 1.31409 * 120.00341 * 338.27824 * 8 6 5 10 10 Si 1.86800 * 119.99923 * 158.28145 * 8 6 5 11 11 H 1.48495 * 109.47514 * 59.99615 * 10 8 6 12 12 H 1.48507 * 109.47079 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47162 * 299.99391 * 10 8 6 14 14 C 1.34783 * 120.00107 * 89.99700 * 5 4 3 15 15 O 1.21286 * 119.99719 * 5.16729 * 14 5 4 16 16 C 1.50692 * 119.99789 * 185.17074 * 14 5 4 17 17 H 1.08996 * 109.44073 * 36.74973 * 16 14 5 18 18 C 1.53121 * 109.43170 * 156.61275 * 16 14 5 19 19 C 1.53502 * 109.30423 * 189.99116 * 18 16 14 20 20 C 1.50715 * 108.05794 * 311.30369 * 19 18 16 21 21 C 1.33864 * 128.67949 * 195.78056 * 20 19 18 22 22 N 1.34424 * 107.79662 * 179.84518 * 21 20 19 23 23 C 1.30793 * 109.32165 * 0.02562 * 22 21 20 24 24 N 1.34407 * 108.55120 * 0.06608 * 23 22 21 25 25 C 1.46470 * 128.43915 * 179.81999 * 24 23 22 26 26 H 1.08996 * 109.47776 * 59.99233 * 1 2 3 27 27 H 1.09000 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47190 * 299.99342 * 1 2 3 29 29 H 1.08999 * 109.46354 * 60.00611 * 3 2 1 30 30 H 1.08992 * 109.47078 * 300.00510 * 3 2 1 31 31 H 1.09005 * 109.47350 * 304.99981 * 4 3 2 32 32 H 1.09006 * 109.46707 * 185.00451 * 4 3 2 33 33 H 0.96995 * 120.00409 * 185.14111 * 9 8 6 34 34 H 1.09000 * 109.49405 * 309.93763 * 18 16 14 35 35 H 1.08998 * 109.49811 * 70.04064 * 18 16 14 36 36 H 1.08998 * 109.74138 * 70.94834 * 19 18 16 37 37 H 1.09000 * 109.73754 * 191.61593 * 19 18 16 38 38 H 1.07999 * 126.10156 * 0.10425 * 21 20 19 39 39 H 1.08000 * 125.71985 * 180.10254 * 23 22 21 40 40 H 1.08998 * 109.60197 * 317.06648 * 25 24 23 41 41 H 1.08996 * 109.60233 * 77.54916 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0969 -0.7984 -1.3371 7 1 3.8209 -1.3098 -2.2474 8 6 4.5748 -1.5219 -0.2513 9 7 5.2961 -0.9243 0.6703 10 14 4.1920 -3.3441 -0.1018 11 1 4.7384 -4.0632 -1.2805 12 1 4.8127 -3.8804 1.1362 13 1 2.7208 -3.5376 -0.0422 14 6 4.2614 1.3340 -2.3219 15 8 4.2451 2.5425 -2.2209 16 6 4.6012 0.6926 -3.6425 17 1 3.9935 -0.2020 -3.7783 18 6 4.3135 1.6797 -4.7771 19 6 4.4192 0.9500 -6.1235 20 6 5.7091 0.1706 -6.1325 21 6 6.3521 -0.3710 -7.1742 22 7 7.4623 -0.9676 -6.7067 23 6 7.5239 -0.8115 -5.4096 24 7 6.4493 -0.1091 -5.0118 25 6 6.0843 0.3069 -3.6557 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8464 -0.8899 31 1 3.8514 0.5682 0.8410 32 1 3.9784 2.1766 0.0890 33 1 5.6920 -1.4427 1.3881 34 1 3.3082 2.0848 -4.6608 35 1 5.0396 2.4920 -4.7455 36 1 3.5764 0.2688 -6.2402 37 1 4.4211 1.6761 -6.9365 38 1 6.0374 -0.3317 -8.2066 39 1 8.3074 -1.1840 -4.7662 40 1 6.2549 -0.5165 -2.9622 41 1 6.6871 1.1662 -3.3621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597754956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:16 Heat of formation + Delta-G solvation = -31.165941 kcal Electronic energy + Delta-G solvation = -24660.129611 eV Core-core repulsion = 21154.770372 eV Total energy + Delta-G solvation = -3505.359239 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23608 -40.79745 -38.69478 -37.14506 -36.53997 -33.90504 -33.53160 -32.02101 -30.55584 -28.68842 -27.29304 -26.65928 -25.60663 -24.23329 -22.79705 -22.29154 -20.98843 -20.05601 -18.76199 -18.05189 -17.87377 -17.13448 -16.97981 -16.61731 -16.20033 -16.11754 -15.81062 -15.52978 -14.99482 -14.80903 -14.76150 -14.65959 -14.21983 -13.95415 -13.62982 -13.40693 -12.96505 -12.91391 -12.87207 -12.70901 -12.54712 -12.40594 -12.13442 -11.97185 -11.86531 -11.71942 -11.04517 -10.91133 -10.54232 -10.45517 -10.33789 -9.44311 -9.22550 -8.28127 -5.98771 1.18051 1.40464 1.50120 1.55647 1.72891 2.06979 2.22191 2.31831 2.83588 2.99817 3.15104 3.60333 3.73607 3.79887 3.88475 3.97501 4.23672 4.25568 4.27535 4.42266 4.48172 4.50469 4.52413 4.57530 4.60190 4.61965 4.75296 4.79089 4.85038 4.89447 4.98112 5.11090 5.24497 5.34791 5.51837 5.55065 5.86739 5.99657 6.30003 6.40472 6.41276 7.13837 7.16295 7.56665 7.97918 8.75288 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.005899 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.825541 B = 4745.717009 C = 5665.742409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.065 3.935 4 C 0.107 3.893 5 N -0.431 5.431 6 C -0.335 4.335 7 H 0.088 0.912 8 C 0.023 3.977 9 N -0.888 5.888 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.467 3.533 15 O -0.629 6.629 16 C -0.088 4.088 17 H 0.093 0.907 18 C -0.097 4.097 19 C -0.036 4.036 20 C -0.031 4.031 21 C -0.043 4.043 22 N -0.529 5.529 23 C 0.174 3.826 24 N -0.452 5.452 25 C 0.134 3.866 26 H 0.041 0.959 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.190 0.810 39 H 0.224 0.776 40 H 0.099 0.901 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 0.641 -6.052 7.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.017 4.017 5 N -0.147 5.147 6 C -0.462 4.462 7 H 0.105 0.895 8 C -0.181 4.181 9 N -0.525 5.525 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.256 3.744 15 O -0.517 6.517 16 C -0.110 4.110 17 H 0.111 0.889 18 C -0.136 4.136 19 C -0.074 4.074 20 C -0.146 4.146 21 C -0.189 4.189 22 N -0.248 5.248 23 C -0.108 4.108 24 N -0.134 5.134 25 C 0.011 3.989 26 H 0.060 0.940 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.207 0.793 39 H 0.241 0.759 40 H 0.118 0.882 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.099 0.618 -6.054 7.337 hybrid contribution -0.726 -0.229 1.211 1.430 sum -4.825 0.389 -4.844 6.848 Atomic orbital electron populations 1.22874 0.80784 1.03170 1.00312 1.88090 1.20293 1.27718 1.95295 1.22811 0.94321 0.84668 0.99474 1.21453 0.91610 0.98064 0.90533 1.43523 1.55371 1.06467 1.09378 1.19299 1.44240 0.80750 1.01916 0.89484 1.25807 0.93816 1.02815 0.95626 1.69901 1.29285 1.38189 1.15106 0.85422 0.78740 0.79096 0.77714 1.19224 1.21170 1.19884 1.20570 0.80321 0.86418 0.87119 1.90510 1.59487 1.15609 1.86086 1.21164 0.95902 1.00345 0.93590 0.88928 1.21433 1.02846 0.96807 0.92469 1.20313 0.91440 0.97981 0.97664 1.21633 0.99081 1.07178 0.86703 1.22191 0.93851 1.03134 0.99769 1.70468 1.21876 1.23932 1.08494 1.25263 0.93373 0.99361 0.92777 1.45569 1.19363 1.40630 1.07867 1.21576 0.95266 1.01539 0.80517 0.93999 0.89158 0.93075 0.91652 0.94857 0.88742 0.91939 0.91891 0.90587 0.92255 0.88732 0.86887 0.79324 0.75946 0.88240 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 11.01 113.37 1.25 1.96 16 2 O -0.39 -15.69 10.18 -148.98 -1.52 -17.20 16 3 C 0.06 2.51 6.28 71.98 0.45 2.96 16 4 C 0.11 4.88 5.47 86.38 0.47 5.35 16 5 N -0.43 -20.11 2.50 -635.54 -1.59 -21.69 16 6 C -0.33 -15.71 7.41 84.04 0.62 -15.09 16 7 H 0.09 4.00 6.50 -2.91 -0.02 3.98 16 8 C 0.02 1.11 4.95 84.93 0.42 1.53 16 9 N -0.89 -44.65 11.49 21.66 0.25 -44.40 16 10 Si 0.96 39.11 29.61 68.60 2.03 41.14 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 C 0.47 20.79 6.73 87.65 0.59 21.38 16 15 O -0.63 -30.76 15.79 -3.05 -0.05 -30.81 16 16 C -0.09 -3.21 1.81 -11.42 -0.02 -3.23 16 17 H 0.09 3.42 6.57 -2.39 -0.02 3.40 16 18 C -0.10 -2.99 4.63 30.80 0.14 -2.84 16 19 C -0.04 -0.87 6.31 30.02 0.19 -0.69 16 20 C -0.03 -0.92 6.57 40.73 0.27 -0.65 16 21 C -0.04 -1.25 11.84 83.30 0.99 -0.26 16 22 N -0.53 -17.47 11.27 -200.96 -2.26 -19.74 16 23 C 0.17 5.39 12.66 180.38 2.28 7.67 16 24 N -0.45 -14.49 3.13 -514.91 -1.61 -16.10 16 25 C 0.13 4.66 6.17 86.47 0.53 5.20 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 4.68 5.54 -2.38 -0.01 4.67 16 32 H 0.06 2.90 7.36 -2.38 -0.02 2.88 16 33 H 0.27 13.09 8.32 -92.71 -0.77 12.32 16 34 H 0.08 2.32 8.11 -2.39 -0.02 2.30 16 35 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 39 H 0.22 5.47 8.06 -2.91 -0.02 5.45 16 40 H 0.10 3.72 7.46 -2.39 -0.02 3.70 16 41 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 Total: -1.00 -61.32 336.32 4.46 -56.86 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.03 Total: 28.66 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 8.19 Total: 23.28 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -5.22 Total: -101.93 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -1.56 Total: -48.01 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -61.32 4.46 -56.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597754956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.691 kcal (2) G-P(sol) polarization free energy of solvation -61.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds