Wall clock time and date at job start Fri Apr 10 2020 17:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99801 * 2 1 4 4 H 1.48498 * 109.46927 * 239.99720 * 3 2 1 5 5 H 1.48496 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47040 * 119.99944 * 3 2 1 7 7 C 1.37881 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9 13 13 C 1.52997 * 117.50231 * 243.62602 * 12 11 10 14 14 C 1.52998 * 117.50058 * 174.99994 * 12 11 10 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 10 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 C 1.50708 * 109.47076 * 179.97438 * 19 18 17 21 21 N 1.33316 * 126.55307 * 269.69143 * 20 19 18 22 22 N 1.28989 * 107.35492 * 179.83422 * 21 20 19 23 23 N 1.28788 * 108.72513 * 0.43238 * 22 21 20 24 24 H 0.97004 * 125.44763 * 179.73027 * 23 22 21 25 25 N 1.28878 * 109.10273 * 359.72552 * 23 22 21 26 26 H 0.96991 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 28 28 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 29 29 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 30 30 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 31 31 H 1.09001 * 115.54721 * 29.33740 * 12 11 10 32 32 H 1.09000 * 117.49450 * 0.02562 * 13 12 11 33 33 H 1.08994 * 117.49954 * 145.01950 * 13 12 11 34 34 H 1.08996 * 117.50282 * 214.98430 * 14 12 11 35 35 H 1.09000 * 117.49560 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 10 37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 10 38 38 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 39 39 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 40 40 H 1.08998 * 109.46965 * 299.99512 * 19 18 17 41 41 H 1.09003 * 109.47184 * 60.00331 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 2.6801 -4.1688 -1.2702 12 6 1.7498 -5.2998 -1.7130 13 6 2.3418 -6.7078 -1.8016 14 6 2.0112 -5.9352 -3.0801 15 6 2.6403 -4.1254 1.1658 16 8 2.2457 -3.6647 2.2161 17 6 3.6244 -5.2667 1.1660 18 6 3.9590 -5.6514 2.6085 19 6 4.9576 -6.8105 2.6087 20 6 5.2876 -7.1890 4.0297 21 7 6.2764 -6.6935 4.7741 22 7 6.2182 -7.2721 5.9255 23 7 5.2403 -8.1101 5.9182 24 1 4.9812 -8.6788 6.6601 25 7 4.6609 -8.0721 4.7676 26 1 -0.4849 0.8400 -0.0004 27 1 0.6249 -2.5563 -0.8920 28 1 0.6242 -2.5575 0.8881 29 1 2.6884 -3.3868 -2.0294 30 1 3.6895 -4.5588 -1.1392 31 1 0.7126 -5.2090 -1.3903 32 1 3.3941 -6.8284 -1.5439 33 1 1.6943 -7.5436 -1.5369 34 1 1.1460 -6.2627 -3.6566 35 1 2.8462 -5.5477 -3.6638 36 1 3.1870 -6.1236 0.6536 37 1 4.5350 -4.9612 0.6509 38 1 4.3963 -4.7944 3.1210 39 1 3.0482 -5.9567 3.1237 40 1 4.5198 -7.6672 2.0965 41 1 5.8684 -6.5054 2.0935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602091584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:00 Heat of formation + Delta-G solvation = 98.401884 kcal Electronic energy + Delta-G solvation = -23032.843984 eV Core-core repulsion = 19565.395979 eV Total energy + Delta-G solvation = -3467.448006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.60272 -39.25388 -37.19714 -35.62291 -34.39136 -34.14390 -32.69685 -32.34406 -28.83565 -27.46160 -25.97517 -24.69157 -23.76407 -22.31350 -22.28607 -21.18261 -20.62898 -19.31462 -18.30514 -17.19776 -16.55911 -16.45274 -15.56250 -15.41845 -15.03542 -14.58228 -14.40696 -14.15082 -13.90458 -13.35759 -12.94684 -12.54884 -12.48000 -12.20255 -12.11284 -11.71188 -11.50572 -11.42619 -11.40682 -11.28100 -11.18534 -11.10021 -10.87384 -10.64377 -10.55699 -10.36890 -10.31017 -10.06387 -9.79694 -9.59805 -8.82722 -8.40013 -7.63430 -6.01230 -4.05776 0.98405 1.96265 2.16401 3.34318 3.38705 3.40974 3.49787 3.69555 3.85265 4.07479 4.17046 4.47779 4.82711 4.96357 5.01582 5.04557 5.11572 5.20847 5.32764 5.39820 5.44896 5.49809 5.59089 5.62227 5.68259 5.69193 5.82278 5.90595 6.00160 6.11696 6.18633 6.23527 6.26535 6.42455 6.48258 7.10946 7.48320 7.59088 7.95522 8.08702 8.27231 8.47429 8.93936 9.15424 9.59343 11.06840 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.003822 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.032409 B = 7323.706458 C = 8982.838978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.246 3.754 10 N -0.596 5.596 11 C 0.143 3.857 12 C -0.164 4.164 13 C -0.185 4.185 14 C -0.177 4.177 15 C 0.507 3.493 16 O -0.542 6.542 17 C -0.140 4.140 18 C -0.098 4.098 19 C -0.025 4.025 20 C 0.183 3.817 21 N -0.274 5.274 22 N -0.056 5.056 23 N -0.234 5.234 24 H 0.473 0.527 25 N -0.301 5.301 26 H 0.263 0.737 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -19.134 1.255 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.127 3.873 10 N -0.327 5.327 11 C 0.018 3.982 12 C -0.184 4.184 13 C -0.222 4.222 14 C -0.215 4.215 15 C 0.293 3.707 16 O -0.420 6.420 17 C -0.180 4.180 18 C -0.137 4.137 19 C -0.065 4.065 20 C -0.099 4.099 21 N -0.147 5.147 22 N -0.051 5.051 23 N -0.079 5.079 24 H 0.326 0.674 25 N -0.153 5.153 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.764 -18.688 2.331 20.772 hybrid contribution -0.058 0.526 -0.010 0.530 sum 8.706 -18.162 2.321 20.274 Atomic orbital electron populations 1.69922 1.05994 1.27064 1.50485 1.24931 0.94863 0.99180 0.95107 0.86575 0.79534 0.82778 0.78637 1.20244 1.21222 1.20174 1.21410 0.93319 0.90728 1.51018 0.92511 1.19252 0.87543 0.82190 0.98286 1.48189 1.45805 1.34704 1.04017 1.21007 0.95096 0.94592 0.87498 1.22944 1.01477 0.93909 1.00054 1.23051 1.01467 0.95259 1.02459 1.22893 1.03346 1.04468 0.90778 1.20306 0.82410 0.83846 0.84104 1.90674 1.58567 1.61749 1.31024 1.21701 0.99808 0.98550 0.97937 1.21285 0.98705 0.97037 0.96712 1.20099 1.01580 1.00132 0.84736 1.25791 0.91074 0.92865 1.00194 1.75906 1.20377 1.21141 0.97305 1.78948 1.07332 1.02021 1.16821 1.47789 1.19466 1.28575 1.12102 0.67375 1.74727 1.23444 1.22889 0.94214 0.92713 0.95066 0.93996 0.89604 0.91328 0.87470 0.88794 0.89218 0.89082 0.88765 0.89068 0.89310 0.90482 0.90816 0.88686 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.25 6.40 5.16 -5.20 -0.03 6.37 16 10 N -0.60 -12.26 2.46 -175.06 -0.43 -12.69 16 11 C 0.14 2.21 5.50 -4.04 -0.02 2.19 16 12 C -0.16 -2.18 5.97 -90.62 -0.54 -2.72 16 13 C -0.19 -1.88 9.19 -26.73 -0.25 -2.13 16 14 C -0.18 -1.89 10.25 -26.73 -0.27 -2.16 16 15 C 0.51 10.22 7.67 -10.98 -0.08 10.13 16 16 O -0.54 -13.59 15.56 5.55 0.09 -13.50 16 17 C -0.14 -1.89 4.25 -27.88 -0.12 -2.01 16 18 C -0.10 -1.30 4.49 -26.74 -0.12 -1.42 16 19 C -0.03 -0.25 5.84 -27.88 -0.16 -0.41 16 20 C 0.18 2.20 7.62 -156.62 -1.19 1.00 16 21 N -0.27 -3.66 12.50 32.45 0.41 -3.26 16 22 N -0.06 -0.65 13.48 60.35 0.81 0.17 16 23 N -0.23 -2.04 7.91 60.34 0.48 -1.56 16 24 H 0.47 1.80 8.96 -340.52 -3.05 -1.25 16 25 N -0.30 -3.30 12.36 32.47 0.40 -2.90 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 29 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.07 0.87 6.17 -51.93 -0.32 0.55 16 31 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.02 6.88 -51.93 -0.36 0.66 16 37 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 38 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -35.84 351.22 -9.12 -44.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -8.67 Total: -2.73 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -3.21 Total: -4.73 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 2.40 Total: -46.26 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.84 -9.12 -44.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602091584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.355 kcal (2) G-P(sol) polarization free energy of solvation -35.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds