Wall clock time and date at job start Fri Apr 10 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48506 * 109.46730 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00401 * 3 2 1 6 6 H 1.48501 * 109.46878 * 60.01099 * 3 2 1 7 7 C 1.37877 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00364 * 170.00098 * 10 9 7 12 12 C 1.53230 * 109.34186 * 187.25323 * 11 10 9 13 13 N 1.47082 * 108.51951 * 306.16425 * 12 11 10 14 14 C 1.34777 * 120.87981 * 231.18555 * 13 12 11 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99675 * 179.72731 * 14 13 12 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 N 1.46499 * 109.47198 * 179.97438 * 17 16 14 19 19 C 1.34430 * 126.82299 * 124.71210 * 18 17 16 20 20 N 1.30827 * 108.07802 * 179.89334 * 19 18 17 21 21 C 1.33242 * 109.82811 * 0.38067 * 20 19 18 22 22 N 1.30715 * 108.94837 * 359.76001 * 21 20 19 23 23 C 1.47079 * 118.23776 * 51.46441 * 13 12 11 24 24 C 1.46903 * 110.99692 * 294.29851 * 10 9 7 25 25 H 0.96995 * 119.99631 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46978 * 60.00190 * 9 7 2 27 27 H 1.08997 * 109.46756 * 300.00162 * 9 7 2 28 28 H 1.09007 * 109.49363 * 67.28772 * 11 10 9 29 29 H 1.09006 * 109.48829 * 307.21036 * 11 10 9 30 30 H 1.09007 * 109.62838 * 186.45836 * 12 11 10 31 31 H 1.08995 * 109.63343 * 65.87824 * 12 11 10 32 32 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 33 33 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 34 34 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 35 35 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 36 36 H 1.07998 * 125.95631 * 0.03240 * 19 18 17 37 37 H 1.08001 * 125.52830 * 179.72962 * 21 20 19 38 38 H 1.08993 * 109.62875 * 68.24376 * 23 13 12 39 39 H 1.08998 * 109.63018 * 188.83153 * 23 13 12 40 40 H 1.09000 * 109.49258 * 292.70544 * 24 10 9 41 41 H 1.09002 * 109.49243 * 52.78589 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8935 0.2376 12 6 2.5637 -6.0031 0.4104 13 7 3.4614 -5.9862 -0.7546 14 6 3.7117 -7.1124 -1.4515 15 8 3.1936 -8.1579 -1.1208 16 6 4.6300 -7.0710 -2.6456 17 6 4.7372 -8.4703 -3.2553 18 7 5.6294 -8.4300 -4.4165 19 6 6.7241 -9.1838 -4.6181 20 7 7.2413 -8.8482 -5.7719 21 6 6.5128 -7.8821 -6.3299 22 7 5.5144 -7.5919 -5.5377 23 6 4.0837 -4.7090 -1.1351 24 6 2.9766 -3.6491 -1.2505 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 0.8795 -5.1263 -0.6123 29 1 0.9160 -4.8191 1.1412 30 1 2.0631 -6.9694 0.4728 31 1 3.1394 -5.8265 1.3189 32 1 4.2295 -6.3809 -3.3883 33 1 5.6183 -6.7345 -2.3326 34 1 5.1375 -9.1604 -2.5127 35 1 3.7488 -8.8068 -3.5684 36 1 7.1080 -9.9368 -3.9458 37 1 6.7147 -7.4144 -7.2822 38 1 4.8026 -4.4104 -0.3723 39 1 4.5884 -4.8192 -2.0949 40 1 2.3147 -3.8993 -2.0796 41 1 3.4270 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206415.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:13 Heat of formation + Delta-G solvation = 46.372309 kcal Electronic energy + Delta-G solvation = -23108.311517 eV Core-core repulsion = 19638.607339 eV Total energy + Delta-G solvation = -3469.704177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.97704 -41.29701 -39.09369 -36.03826 -35.85563 -34.43580 -32.56429 -32.15658 -31.31195 -29.96399 -27.47092 -25.90195 -24.65294 -23.79980 -22.89177 -22.61329 -21.76808 -19.86200 -18.79601 -18.51295 -17.62989 -17.27214 -16.87843 -16.68230 -16.28733 -16.03306 -15.84805 -15.50942 -15.31664 -15.13314 -14.83893 -14.63587 -14.22512 -13.97801 -13.67473 -13.43154 -13.06984 -13.00075 -12.76884 -12.62893 -12.45760 -12.36958 -12.19963 -12.13091 -11.79607 -11.28726 -11.09885 -10.92477 -10.77694 -10.64676 -10.63499 -9.81826 -9.09543 -8.21992 -6.32413 0.70796 1.30934 1.42203 1.43142 1.48322 1.56161 1.95407 2.04431 2.39845 3.10668 3.20149 3.35718 3.48707 3.56232 3.75960 3.93596 4.00680 4.11088 4.20382 4.20450 4.25138 4.31411 4.41072 4.53710 4.65589 4.71125 4.76424 4.83283 4.91935 4.99158 5.16591 5.20443 5.29217 5.38900 5.49226 5.62487 5.90638 6.00481 6.18716 6.36185 6.53583 6.83946 6.99995 7.14151 7.37944 8.89639 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.003070 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.640722 B = 9117.382313 C =10142.373317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.041 3.959 12 C 0.128 3.872 13 N -0.610 5.610 14 C 0.523 3.477 15 O -0.577 6.577 16 C -0.141 4.141 17 C 0.150 3.850 18 N -0.384 5.384 19 C 0.264 3.736 20 N -0.579 5.579 21 C 0.193 3.807 22 N -0.354 5.354 23 C 0.121 3.879 24 C 0.048 3.952 25 H 0.264 0.736 26 H -0.042 1.042 27 H 0.005 0.995 28 H 0.013 0.987 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.260 0.740 37 H 0.238 0.762 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.013 0.987 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.122 -17.000 -6.151 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.088 4.088 12 C 0.005 3.995 13 N -0.342 5.342 14 C 0.312 3.688 15 O -0.458 6.458 16 C -0.182 4.182 17 C 0.029 3.971 18 N -0.174 5.174 19 C -0.032 4.032 20 N -0.307 5.307 21 C -0.109 4.109 22 N -0.182 5.182 23 C -0.002 4.002 24 C -0.081 4.081 25 H 0.073 0.927 26 H -0.025 1.025 27 H 0.023 0.977 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.276 0.724 37 H 0.254 0.746 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.031 0.969 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.720 -16.965 -5.823 22.583 hybrid contribution -1.116 1.055 -0.439 1.597 sum 12.605 -15.910 -6.262 21.242 Atomic orbital electron populations 1.70102 1.07911 1.27876 1.51875 1.25949 0.95691 1.03367 0.94811 0.85312 0.79225 0.78447 0.77509 1.18133 1.20713 1.20693 1.21489 0.93853 0.90657 1.49852 0.91151 1.19377 0.90099 0.88995 0.93359 1.62023 1.27016 1.02605 1.34684 1.22461 0.95779 0.90125 1.00408 1.21627 0.91261 0.98292 0.88305 1.48297 1.46531 1.09157 1.30247 1.20684 0.81634 0.82636 0.83850 1.90685 1.53648 1.30889 1.70553 1.21818 1.01420 0.99428 0.95494 1.21577 0.94363 0.97625 0.83583 1.50657 1.22381 1.28272 1.16126 1.26943 0.84927 0.96130 0.95214 1.70585 1.32496 1.18088 1.09501 1.26548 0.89168 0.94166 1.01066 1.78029 1.25211 1.17464 0.97467 1.22100 0.94498 0.80797 1.02755 1.22463 0.95676 1.00197 0.89768 0.92737 1.02462 0.97698 0.96835 0.90054 0.88796 0.89696 0.87855 0.86165 0.84602 0.89549 0.72425 0.74629 0.89202 0.86934 0.96853 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.52 -28.24 8.41 25.60 0.22 -28.03 16 8 H 0.07 3.66 7.13 -2.91 -0.02 3.64 16 9 C 0.21 10.77 4.72 85.56 0.40 11.18 16 10 N -0.54 -21.87 4.62 -898.88 -4.15 -26.03 16 11 C 0.04 1.43 5.62 86.38 0.49 1.92 16 12 C 0.13 3.54 6.60 86.35 0.57 4.11 16 13 N -0.61 -15.41 3.00 -817.05 -2.45 -17.86 16 14 C 0.52 12.07 7.71 87.66 0.68 12.74 16 15 O -0.58 -16.32 15.43 -3.04 -0.05 -16.37 16 16 C -0.14 -2.28 4.28 29.85 0.13 -2.15 16 17 C 0.15 2.13 5.84 86.38 0.50 2.63 16 18 N -0.38 -6.26 3.69 -352.06 -1.30 -7.56 16 19 C 0.26 3.51 12.63 180.36 2.28 5.79 16 20 N -0.58 -10.79 11.19 -204.00 -2.28 -13.07 16 21 C 0.19 3.55 13.03 180.76 2.36 5.90 16 22 N -0.35 -7.47 12.57 -61.24 -0.77 -8.24 16 23 C 0.12 2.90 6.54 86.51 0.57 3.47 16 24 C 0.05 1.66 5.47 86.54 0.47 2.13 16 25 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 26 H -0.04 -2.43 8.12 -2.39 -0.02 -2.45 16 27 H 0.00 0.28 7.97 -2.39 -0.02 0.26 16 28 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.08 2.79 7.99 -2.38 -0.02 2.77 16 30 H 0.09 2.55 7.06 -2.38 -0.02 2.53 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 1.88 7.67 -2.38 -0.02 1.86 16 33 H 0.12 1.49 7.99 -2.39 -0.02 1.47 16 34 H 0.14 1.24 8.04 -2.39 -0.02 1.23 16 35 H 0.09 1.46 8.10 -2.39 -0.02 1.45 16 36 H 0.26 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.24 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.11 2.01 6.01 -2.39 -0.01 2.00 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.09 3.16 6.67 -2.39 -0.02 3.15 16 Total: -1.00 -73.47 340.69 1.45 -72.02 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.02 Total: 7.48 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 9.12 Total: 20.14 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -10.67 Total: -128.16 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.37 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.47 1.45 -72.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206415.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.393 kcal (2) G-P(sol) polarization free energy of solvation -73.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds