Wall clock time and date at job start Fri Apr 10 2020 17:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.39868 * 119.79679 * 2 1 4 4 C 1.29693 * 121.14298 * 199.17766 * 3 2 1 5 5 C 1.46725 * 119.55049 * 180.08713 * 4 3 2 6 6 O 1.21660 * 120.00560 * 170.56961 * 5 4 3 7 7 N 1.34784 * 120.00042 * 350.56010 * 5 4 3 8 8 C 1.46927 * 120.62830 * 352.24168 * 7 5 4 9 9 C 1.53185 * 108.89445 * 233.55621 * 8 7 5 10 10 C 1.53077 * 109.29230 * 305.57904 * 9 8 7 11 11 C 1.53036 * 109.65890 * 61.15532 * 10 9 8 12 12 H 1.08998 * 109.50072 * 58.65028 * 11 10 9 13 13 C 1.50705 * 109.49749 * 178.74821 * 11 10 9 14 14 H 1.07998 * 119.99794 * 359.83182 * 13 11 10 15 15 C 1.37874 * 119.99693 * 179.83911 * 13 11 10 16 16 N 1.31506 * 120.00491 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99860 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46778 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46986 * 119.99364 * 17 15 13 20 20 H 1.48492 * 109.47492 * 239.99921 * 17 15 13 21 21 C 1.46925 * 120.63198 * 172.25829 * 7 5 4 22 22 C 1.50549 * 120.89972 * 0.35531 * 4 3 2 23 23 C 1.53286 * 109.45064 * 325.45605 * 22 4 3 24 24 C 1.34750 * 119.80168 * 180.02562 * 2 1 3 25 25 O 1.21250 * 120.12005 * 359.74798 * 24 2 1 26 26 H 1.08996 * 109.47740 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46759 * 120.00325 * 1 2 3 28 28 H 1.09005 * 109.46974 * 239.99857 * 1 2 3 29 29 H 1.09001 * 109.58744 * 353.41591 * 8 7 5 30 30 H 1.09002 * 109.58470 * 113.69687 * 8 7 5 31 31 H 1.09001 * 109.49705 * 65.38932 * 9 8 7 32 32 H 1.09004 * 109.49975 * 185.48785 * 9 8 7 33 33 H 1.09001 * 109.34961 * 301.12576 * 10 9 8 34 34 H 1.09001 * 109.43998 * 181.23726 * 10 9 8 35 35 H 0.97008 * 120.00669 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.58590 * 246.15912 * 21 7 5 37 37 H 1.08999 * 109.58295 * 6.59026 * 21 7 5 38 38 H 1.08998 * 109.44429 * 85.61706 * 22 4 3 39 39 H 1.09004 * 109.44557 * 205.53019 * 22 4 3 40 40 H 1.09001 * 109.70449 * 287.77116 * 23 22 4 41 41 H 1.09001 * 109.42929 * 167.55635 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1600 1.2138 0.0000 4 6 3.4031 1.2748 -0.3646 5 6 4.0991 2.5664 -0.3494 6 8 5.3025 2.6112 -0.5221 7 7 3.4051 3.7035 -0.1443 8 6 1.9365 3.6872 -0.1035 9 6 1.4009 4.7181 -1.1019 10 6 2.0259 6.0833 -0.8033 11 6 3.5459 5.9990 -0.9598 12 1 3.7903 5.6816 -1.9735 13 6 4.1545 7.3520 -0.6952 14 1 3.5207 8.1894 -0.4434 15 6 5.5206 7.5208 -0.7746 16 7 6.2925 6.5011 -1.0808 17 14 6.2751 9.1980 -0.4473 18 1 5.1997 10.1702 -0.1251 19 1 7.2150 9.1029 0.6985 20 1 7.0102 9.6543 -1.6541 21 6 4.1028 4.9830 0.0424 22 6 4.1400 0.0396 -0.8090 23 6 3.6424 -1.1680 -0.0067 24 6 2.1346 -1.1693 -0.0005 25 8 1.5270 -2.2185 0.0036 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5139 0.8900 29 1 1.5745 2.6950 -0.3731 30 1 1.5960 3.9398 0.9007 31 1 1.6634 4.4138 -2.1151 32 1 0.3167 4.7840 -1.0106 33 1 1.7816 6.3768 0.2176 34 1 1.6297 6.8235 -1.4986 35 1 7.2537 6.6197 -1.1363 36 1 3.9389 5.3438 1.0578 37 1 5.1701 4.8459 -0.1311 38 1 3.9608 -0.1275 -1.8711 39 1 5.2083 0.1731 -0.6383 40 1 4.0107 -1.1060 1.0173 41 1 4.0053 -2.0856 -0.4699 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706323618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:39 Heat of formation + Delta-G solvation = -12.778785 kcal Electronic energy + Delta-G solvation = -24362.207225 eV Core-core repulsion = 20857.645313 eV Total energy + Delta-G solvation = -3504.561912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91334 -39.52807 -37.27870 -36.76460 -34.24766 -33.54220 -32.11608 -31.31189 -29.72355 -28.04052 -25.57269 -25.18542 -24.55685 -23.00560 -21.83258 -20.53247 -18.99891 -17.85311 -17.77475 -16.98082 -16.37794 -16.27543 -15.41848 -15.28923 -14.85302 -14.50006 -14.46462 -13.97175 -13.61769 -13.38846 -13.32413 -12.85278 -12.77973 -12.68607 -12.47438 -12.33253 -12.13119 -11.82136 -11.56256 -11.32239 -11.00875 -10.71823 -10.49935 -10.32542 -10.26392 -9.96965 -9.78350 -9.35126 -9.14905 -8.86884 -8.82793 -8.47324 -7.83344 -6.02984 -4.11712 0.87210 2.02951 2.29541 3.26532 3.33381 3.37287 3.40045 3.45629 3.85193 4.34235 4.40022 4.49460 4.77955 4.83104 5.07192 5.19043 5.20547 5.27217 5.45039 5.47395 5.51880 5.57282 5.57851 5.75841 5.87998 6.00601 6.15548 6.30224 6.41326 6.60718 6.65037 6.82804 6.94678 7.06733 7.18051 7.42879 7.58280 7.73991 7.82366 7.93731 8.12207 8.33601 8.59802 8.92580 9.54260 11.02265 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029227 B = 0.004124 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.787530 B = 6788.715919 C = 7589.630343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.470 5.470 3 N -0.207 5.207 4 C 0.095 3.905 5 C 0.556 3.444 6 O -0.519 6.519 7 N -0.578 5.578 8 C 0.078 3.922 9 C -0.134 4.134 10 C -0.112 4.112 11 C 0.040 3.960 12 H 0.030 0.970 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.880 5.880 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.110 3.890 22 C -0.108 4.108 23 C -0.141 4.141 24 C 0.495 3.505 25 O -0.525 6.525 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.263 0.737 36 H 0.048 0.952 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -12.076 1.820 15.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.290 5.290 3 N -0.019 5.019 4 C -0.098 4.098 5 C 0.339 3.661 6 O -0.393 6.393 7 N -0.310 5.310 8 C -0.046 4.046 9 C -0.172 4.172 10 C -0.150 4.150 11 C 0.021 3.979 12 H 0.048 0.952 13 C -0.559 4.559 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.518 5.518 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.010 4.010 22 C -0.148 4.148 23 C -0.181 4.181 24 C 0.283 3.717 25 O -0.398 6.398 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.347 -12.281 2.031 15.566 hybrid contribution 0.842 0.494 -0.007 0.976 sum -8.505 -11.787 2.024 14.675 Atomic orbital electron populations 1.21673 0.75263 1.03899 1.02652 1.49274 1.07482 1.01884 1.70324 1.75065 1.08407 1.04620 1.13805 1.25356 0.91504 0.97790 0.95191 1.17361 0.86805 0.82255 0.79649 1.90885 1.13257 1.85672 1.49460 1.48486 1.07205 1.08505 1.66776 1.22734 0.79954 1.02301 0.99564 1.21979 0.98974 0.97154 0.99128 1.21654 0.98806 0.94202 1.00295 1.18968 0.89160 0.94283 0.95490 0.95185 1.21118 0.91847 0.94499 1.48418 0.92262 1.25048 0.97425 0.96720 0.94802 1.69883 1.04767 1.29719 1.47428 0.86540 0.79255 0.84333 0.77910 1.19794 1.20965 1.21000 1.22451 1.00917 0.78983 0.98667 1.20979 1.03610 0.89207 1.01013 1.21899 0.90963 1.01140 1.04134 1.21316 0.91382 0.83385 0.75606 1.90718 1.70480 1.30513 1.48120 0.89066 0.91310 0.91111 0.86068 0.91966 0.92426 0.92189 0.93180 0.93069 0.92664 0.93396 0.85731 0.88128 0.86205 0.87442 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.99 10.35 59.84 0.62 1.61 16 2 N -0.47 -5.69 3.86 -67.06 -0.26 -5.95 16 3 N -0.21 -2.73 7.10 34.90 0.25 -2.48 16 4 C 0.09 1.35 6.62 -80.14 -0.53 0.81 16 5 C 0.56 10.37 7.62 -12.83 -0.10 10.27 16 6 O -0.52 -11.45 15.64 5.22 0.08 -11.37 16 7 N -0.58 -11.11 2.97 -174.30 -0.52 -11.63 16 8 C 0.08 1.22 5.87 -3.71 -0.02 1.20 16 9 C -0.13 -2.12 6.09 -26.60 -0.16 -2.29 16 10 C -0.11 -2.16 5.10 -26.67 -0.14 -2.30 16 11 C 0.04 0.96 2.26 -91.65 -0.21 0.75 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.52 -13.71 8.56 -34.44 -0.29 -14.01 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.88 -24.88 11.39 55.43 0.63 -24.25 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.11 2.53 5.41 -3.71 -0.02 2.51 16 22 C -0.11 -1.21 5.92 -27.81 -0.16 -1.37 16 23 C -0.14 -1.39 6.21 -27.70 -0.17 -1.57 16 24 C 0.49 6.24 7.55 -10.96 -0.08 6.15 16 25 O -0.52 -7.92 17.10 5.58 0.10 -7.82 16 26 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.12 1.70 4.06 -134.80 -0.55 1.15 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.12 3.35 5.11 -51.93 -0.27 3.08 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.12 1.34 7.46 -51.93 -0.39 0.95 16 40 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -31.33 330.28 -7.36 -38.70 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.23 Total: 0.71 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.36 Total: 3.38 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.10 Total: -44.31 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.33 -7.36 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706323618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.919 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds