Wall clock time and date at job start Fri Apr 10 2020 17:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34943 * 126.03520 * 2 1 4 4 C 1.35323 * 107.74321 * 180.14846 * 3 2 1 5 5 C 1.50701 * 126.03731 * 179.87467 * 4 3 2 6 6 H 1.08992 * 109.47395 * 16.95872 * 5 4 3 7 7 O 1.42901 * 109.47083 * 136.96332 * 5 4 3 8 8 C 1.50699 * 109.46725 * 256.95524 * 5 4 3 9 9 O 1.21279 * 120.00660 * 259.99699 * 8 5 4 10 10 N 1.34780 * 119.99492 * 80.00481 * 8 5 4 11 11 C 1.46929 * 120.60827 * 355.49709 * 10 8 5 12 12 C 1.53194 * 108.77229 * 233.53664 * 11 10 8 13 13 C 1.53038 * 109.34087 * 305.41205 * 12 11 10 14 14 C 1.53047 * 109.53531 * 61.34603 * 13 12 11 15 15 H 1.08996 * 109.49140 * 58.62360 * 14 13 12 16 16 C 1.50699 * 109.49496 * 178.68072 * 14 13 12 17 17 H 1.07997 * 119.99449 * 120.00227 * 16 14 13 18 18 C 1.37878 * 120.00577 * 300.00680 * 16 14 13 19 19 N 1.31513 * 119.99462 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00342 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47270 * 119.99805 * 20 18 16 23 23 H 1.48500 * 109.47168 * 239.99978 * 20 18 16 24 24 C 1.46927 * 120.62905 * 175.47694 * 10 8 5 25 25 C 1.39869 * 107.91714 * 359.60069 * 4 3 2 26 26 N 1.30833 * 108.20638 * 0.24794 * 25 4 3 27 27 H 1.08996 * 109.47371 * 270.31162 * 1 2 3 28 28 H 1.08999 * 109.47301 * 30.31531 * 1 2 3 29 29 H 1.09001 * 109.47003 * 150.31504 * 1 2 3 30 30 H 1.07996 * 126.12981 * 359.97438 * 3 2 1 31 31 H 0.96702 * 114.00574 * 59.99424 * 7 5 4 32 32 H 1.09004 * 109.56398 * 113.76423 * 11 10 8 33 33 H 1.08998 * 109.61271 * 353.33983 * 11 10 8 34 34 H 1.09003 * 109.49312 * 185.44523 * 12 11 10 35 35 H 1.09000 * 109.49751 * 65.38278 * 12 11 10 36 36 H 1.08993 * 109.45940 * 181.36793 * 13 12 11 37 37 H 1.09003 * 109.45715 * 301.33288 * 13 12 11 38 38 H 0.97006 * 119.99845 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.58860 * 6.64663 * 24 10 8 40 40 H 1.08994 * 109.70580 * 246.28757 * 24 10 8 41 41 H 1.08002 * 125.89407 * 180.26833 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0072 6 1 4.4908 2.5558 0.2927 7 8 5.7317 1.0236 0.9099 8 6 5.3591 1.5768 -1.3931 9 8 6.3171 0.8826 -1.6598 10 7 4.8232 2.3768 -2.3362 11 6 3.6045 3.1489 -2.0579 12 6 2.5696 2.8457 -3.1460 13 6 3.1854 3.1161 -4.5206 14 6 4.3911 2.1971 -4.7310 15 1 4.0740 1.1573 -4.6517 16 6 4.9771 2.4413 -6.0977 17 1 6.0006 2.7719 -6.1950 18 6 4.2068 2.2427 -7.2238 19 7 2.9606 1.8396 -7.1052 20 14 4.9331 2.5461 -8.9178 21 1 6.3431 2.9913 -8.7794 22 1 4.8855 1.2904 -9.7090 23 1 4.1481 3.5985 -9.6117 24 6 5.4468 2.4935 -3.6614 25 6 3.5346 -0.7321 0.0038 26 7 2.2891 -1.1328 0.0058 27 1 -0.3634 0.0056 1.0276 28 1 -0.3634 0.8871 -0.5187 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9281 2.1193 -0.0004 31 1 6.0246 0.1252 0.7040 32 1 3.8380 4.2136 -2.0621 33 1 3.2053 2.8641 -1.0844 34 1 1.6972 3.4841 -3.0062 35 1 2.2693 1.7999 -3.0811 36 1 2.4430 2.9242 -5.2952 37 1 3.5075 4.1559 -4.5760 38 1 2.4187 1.6995 -7.8975 39 1 6.2634 1.7763 -3.7454 40 1 5.8323 3.5037 -3.7985 41 1 4.4054 -1.3710 0.0074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:22 Heat of formation + Delta-G solvation = -4.772507 kcal Electronic energy + Delta-G solvation = -24564.762007 eV Core-core repulsion = 21060.547273 eV Total energy + Delta-G solvation = -3504.214734 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48081 -39.64997 -37.25096 -35.96008 -33.64195 -33.25033 -31.53059 -31.15503 -29.98523 -27.84071 -26.04038 -25.11077 -24.00751 -21.77554 -21.26855 -20.94383 -19.96934 -18.51049 -17.64937 -17.28787 -16.34838 -15.86411 -15.52476 -15.19344 -14.79410 -14.59724 -14.28550 -13.98605 -13.55511 -13.43014 -13.03166 -13.00017 -12.83782 -12.74690 -12.59059 -12.18367 -12.02615 -11.80417 -11.14310 -11.01031 -10.87754 -10.72852 -10.55927 -10.34044 -9.99505 -9.83272 -9.54681 -9.48671 -9.32885 -8.87075 -8.42077 -8.38608 -7.91853 -6.04414 -4.11308 1.75463 2.39316 2.58916 3.04722 3.27135 3.35405 3.39205 3.49696 4.35555 4.41110 4.53359 4.61184 4.80168 4.95696 4.98837 5.02576 5.20482 5.23580 5.25825 5.30273 5.55843 5.64410 5.73058 5.89321 6.03411 6.27448 6.35353 6.43747 6.48353 6.62523 6.76993 6.84250 6.93778 7.12370 7.28832 7.52734 7.59407 7.66736 7.88743 7.98154 8.04623 8.34760 8.57873 8.92702 9.53814 11.01159 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.004845 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.479859 B = 5778.223335 C = 6545.929501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.371 5.371 3 C 0.076 3.924 4 C -0.269 4.269 5 C 0.175 3.825 6 H 0.120 0.880 7 O -0.537 6.537 8 C 0.489 3.511 9 O -0.546 6.546 10 N -0.595 5.595 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.112 4.112 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.513 4.513 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.115 3.885 25 C 0.068 3.932 26 N -0.292 5.292 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.177 0.823 31 H 0.383 0.617 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.259 0.741 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.123 1.369 15.498 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.153 5.153 3 C -0.071 4.071 4 C -0.281 4.281 5 C 0.111 3.889 6 H 0.138 0.862 7 O -0.342 6.342 8 C 0.276 3.724 9 O -0.425 6.425 10 N -0.328 5.328 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.150 4.150 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.551 4.551 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.006 4.006 25 C -0.118 4.118 26 N -0.113 5.113 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.194 0.806 31 H 0.232 0.768 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.807 0.522 15.529 16.964 hybrid contribution 0.663 0.420 -1.393 1.599 sum -6.145 0.942 14.136 15.443 Atomic orbital electron populations 1.21896 0.73974 1.04951 1.03240 1.48471 1.06758 1.03716 1.56320 1.22290 0.90424 0.93554 1.00842 1.20349 0.94327 0.94709 1.18739 1.19881 0.84732 0.96967 0.87284 0.86232 1.86538 1.60330 1.36422 1.50897 1.21274 0.83954 0.79907 0.87306 1.90658 1.28493 1.42142 1.81178 1.48243 1.26527 1.43812 1.14240 1.21870 0.85746 0.95501 0.98654 1.21967 0.96619 1.00976 0.97456 1.21621 1.00995 0.98434 0.93925 1.18955 0.90982 0.95983 0.91902 0.95367 1.21124 0.98263 1.45430 0.90319 0.92399 1.24936 0.94858 0.94895 0.99136 1.69884 1.07329 1.46583 1.29064 0.86523 0.79378 0.77823 0.84220 1.19681 1.21029 1.21051 1.22009 0.97731 1.00803 0.80008 1.23637 0.95419 0.94106 0.98660 1.77384 1.01430 1.08059 1.24454 0.90733 0.89182 0.89122 0.80555 0.76801 0.91778 0.91359 0.92614 0.92570 0.88657 0.94526 0.93069 0.90296 0.92577 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.47 59.85 0.69 1.44 16 2 N -0.37 -4.44 4.01 -68.16 -0.27 -4.71 16 3 C 0.08 0.86 10.13 -17.22 -0.17 0.69 16 4 C -0.27 -3.56 4.79 -105.05 -0.50 -4.07 16 5 C 0.18 2.42 3.03 -29.03 -0.09 2.33 16 6 H 0.12 1.38 7.02 -51.93 -0.36 1.02 16 7 O -0.54 -7.46 13.06 -54.30 -0.71 -8.17 16 8 C 0.49 8.77 6.94 -10.98 -0.08 8.69 16 9 O -0.55 -11.64 15.75 -13.51 -0.21 -11.86 16 10 N -0.60 -10.80 2.97 -172.77 -0.51 -11.32 16 11 C 0.11 1.53 6.07 -3.71 -0.02 1.51 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C -0.11 -2.44 4.96 -26.69 -0.13 -2.58 16 14 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.88 11.31 55.43 0.63 -24.25 16 20 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.12 2.49 5.66 -3.71 -0.02 2.46 16 25 C 0.07 0.96 11.47 -17.37 -0.20 0.76 16 26 N -0.29 -4.27 12.58 30.62 0.39 -3.89 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.18 1.38 6.89 -52.49 -0.36 1.02 16 31 H 0.38 4.61 8.04 45.56 0.37 4.98 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.77 2.93 -51.93 -0.15 0.62 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 2.38 6.04 -51.93 -0.31 2.07 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.18 2.19 7.84 -52.49 -0.41 1.78 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -33.67 332.35 -6.94 -40.62 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.95 Total: 5.40 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.29 Total: -2.86 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.23 Total: -44.16 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.92 Total: -20.03 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.67 -6.94 -40.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.846 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds