Wall clock time and date at job start Fri Apr 10 2020 17:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34943 * 126.03520 * 2 1 4 4 C 1.35323 * 107.74321 * 180.14846 * 3 2 1 5 5 C 1.50701 * 126.03731 * 179.87467 * 4 3 2 6 6 H 1.08992 * 109.47395 * 16.95872 * 5 4 3 7 7 O 1.42901 * 109.47083 * 136.96332 * 5 4 3 8 8 C 1.50699 * 109.46725 * 256.95524 * 5 4 3 9 9 O 1.21279 * 120.00660 * 259.99699 * 8 5 4 10 10 N 1.34780 * 119.99492 * 80.00481 * 8 5 4 11 11 C 1.46929 * 120.60827 * 355.49709 * 10 8 5 12 12 C 1.53194 * 108.77229 * 233.53664 * 11 10 8 13 13 C 1.53038 * 109.34087 * 305.41205 * 12 11 10 14 14 C 1.53047 * 109.53531 * 61.34603 * 13 12 11 15 15 H 1.08996 * 109.49140 * 58.62360 * 14 13 12 16 16 C 1.50699 * 109.49496 * 178.68072 * 14 13 12 17 17 H 1.07997 * 119.99449 * 120.00227 * 16 14 13 18 18 C 1.37878 * 120.00577 * 300.00680 * 16 14 13 19 19 N 1.31513 * 119.99462 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00342 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47075 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47270 * 119.99805 * 20 18 16 23 23 H 1.48500 * 109.47168 * 239.99978 * 20 18 16 24 24 C 1.46927 * 120.62905 * 175.47694 * 10 8 5 25 25 C 1.39869 * 107.91714 * 359.60069 * 4 3 2 26 26 N 1.30833 * 108.20638 * 0.24794 * 25 4 3 27 27 H 1.08996 * 109.47371 * 270.31162 * 1 2 3 28 28 H 1.08999 * 109.47301 * 30.31531 * 1 2 3 29 29 H 1.09001 * 109.47003 * 150.31504 * 1 2 3 30 30 H 1.07996 * 126.12981 * 359.97438 * 3 2 1 31 31 H 0.96702 * 114.00574 * 59.99424 * 7 5 4 32 32 H 1.09004 * 109.56398 * 113.76423 * 11 10 8 33 33 H 1.08998 * 109.61271 * 353.33983 * 11 10 8 34 34 H 1.09003 * 109.49312 * 185.44523 * 12 11 10 35 35 H 1.09000 * 109.49751 * 65.38278 * 12 11 10 36 36 H 1.08993 * 109.45940 * 181.36793 * 13 12 11 37 37 H 1.09003 * 109.45715 * 301.33288 * 13 12 11 38 38 H 0.97006 * 119.99845 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.58860 * 6.64663 * 24 10 8 40 40 H 1.08994 * 109.70580 * 246.28757 * 24 10 8 41 41 H 1.08002 * 125.89407 * 180.26833 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0072 6 1 4.4908 2.5558 0.2927 7 8 5.7317 1.0236 0.9099 8 6 5.3591 1.5768 -1.3931 9 8 6.3171 0.8826 -1.6598 10 7 4.8232 2.3768 -2.3362 11 6 3.6045 3.1489 -2.0579 12 6 2.5696 2.8457 -3.1460 13 6 3.1854 3.1161 -4.5206 14 6 4.3911 2.1971 -4.7310 15 1 4.0740 1.1573 -4.6517 16 6 4.9771 2.4413 -6.0977 17 1 6.0006 2.7719 -6.1950 18 6 4.2068 2.2427 -7.2238 19 7 2.9606 1.8396 -7.1052 20 14 4.9331 2.5461 -8.9178 21 1 6.3431 2.9913 -8.7794 22 1 4.8855 1.2904 -9.7090 23 1 4.1481 3.5985 -9.6117 24 6 5.4468 2.4935 -3.6614 25 6 3.5346 -0.7321 0.0038 26 7 2.2891 -1.1328 0.0058 27 1 -0.3634 0.0056 1.0276 28 1 -0.3634 0.8871 -0.5187 29 1 -0.3633 -0.8928 -0.5089 30 1 1.9281 2.1193 -0.0004 31 1 6.0246 0.1252 0.7040 32 1 3.8380 4.2136 -2.0621 33 1 3.2053 2.8641 -1.0844 34 1 1.6972 3.4841 -3.0062 35 1 2.2693 1.7999 -3.0811 36 1 2.4430 2.9242 -5.2952 37 1 3.5075 4.1559 -4.5760 38 1 2.4187 1.6995 -7.8975 39 1 6.2634 1.7763 -3.7454 40 1 5.8323 3.5037 -3.7985 41 1 4.4054 -1.3710 0.0074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:22 Heat of formation + Delta-G solvation = -28.995332 kcal Electronic energy + Delta-G solvation = -24565.812387 eV Core-core repulsion = 21060.547273 eV Total energy + Delta-G solvation = -3505.265115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45712 -41.00843 -38.69622 -37.22201 -35.43516 -34.12124 -33.16443 -32.46052 -31.45754 -28.81792 -27.25562 -26.79666 -25.43587 -23.36407 -22.18621 -22.15686 -21.33316 -19.97622 -18.79582 -18.60140 -18.12678 -17.24659 -16.66873 -16.35920 -16.28128 -15.77718 -15.53370 -15.18486 -15.06226 -14.90019 -14.53977 -14.35038 -13.91972 -13.73511 -13.61535 -13.49012 -13.39045 -13.03185 -12.89897 -12.67128 -12.57927 -12.23651 -11.89340 -11.85385 -11.60074 -11.57158 -11.24818 -10.84678 -10.65431 -10.45903 -10.38840 -9.50496 -9.37985 -8.11966 -6.26974 0.86206 1.38400 1.40816 1.43723 1.52336 1.64417 1.79480 2.12147 2.42918 3.14743 3.43032 3.52261 3.64455 3.81241 4.05095 4.11431 4.24475 4.26611 4.31767 4.37203 4.48001 4.55156 4.61048 4.73374 4.76383 4.83808 4.87816 4.94170 4.98453 5.13463 5.28344 5.47923 5.50418 5.57509 5.60885 5.93604 6.06788 6.14578 6.34259 6.45727 6.59973 6.65487 6.83033 7.17922 7.41382 8.91689 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.004845 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.479859 B = 5778.223335 C = 6545.929501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.372 5.372 3 C 0.089 3.911 4 C -0.291 4.291 5 C 0.192 3.808 6 H 0.154 0.846 7 O -0.543 6.543 8 C 0.481 3.519 9 O -0.591 6.591 10 N -0.599 5.599 11 C 0.105 3.895 12 C -0.122 4.122 13 C -0.106 4.106 14 C 0.043 3.957 15 H -0.022 1.022 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.954 3.046 21 H -0.269 1.269 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.127 3.873 25 C 0.050 3.950 26 N -0.330 5.330 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.221 0.779 31 H 0.388 0.612 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 3.611 16.991 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.153 5.153 3 C -0.059 4.059 4 C -0.304 4.304 5 C 0.129 3.871 6 H 0.171 0.829 7 O -0.348 6.348 8 C 0.270 3.730 9 O -0.473 6.473 10 N -0.331 5.331 11 C -0.016 4.016 12 C -0.160 4.160 13 C -0.144 4.144 14 C 0.024 3.976 15 H -0.003 1.003 16 C -0.575 4.575 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.005 3.995 25 C -0.135 4.135 26 N -0.152 5.152 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.238 0.762 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.369 2.763 17.048 19.191 hybrid contribution 1.089 -0.338 -1.878 2.197 sum -7.279 2.425 15.170 17.000 Atomic orbital electron populations 1.22285 0.71611 1.06035 1.05086 1.48855 1.08153 1.03229 1.55030 1.22912 0.89532 0.95107 0.98362 1.20371 0.95017 0.94185 1.20816 1.19875 0.84414 0.98773 0.84087 0.82863 1.86514 1.60620 1.36992 1.50697 1.22254 0.83313 0.78599 0.88882 1.90631 1.30642 1.43744 1.82250 1.48316 1.27646 1.44398 1.12765 1.22159 0.83445 0.96547 0.99491 1.21850 0.98447 1.00654 0.95002 1.21412 0.98929 0.97702 0.96354 1.18846 0.92961 0.93732 0.92078 1.00335 1.21487 0.98209 1.45696 0.92128 0.93009 1.25673 0.95223 0.94681 1.02590 1.70018 1.08279 1.47068 1.29935 0.85566 0.78842 0.77725 0.79891 1.19286 1.21082 1.19976 1.21559 0.96164 1.00230 0.81571 1.23863 0.95633 0.95147 0.98900 1.77321 1.02008 1.09991 1.25898 0.88508 0.86424 0.89765 0.76249 0.76187 0.89129 0.87298 0.88513 0.94590 0.92089 0.94024 0.93004 0.93320 0.91597 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 11.47 127.77 1.47 2.53 16 2 N -0.37 -7.94 4.01 -369.57 -1.48 -9.42 16 3 C 0.09 1.68 10.13 83.54 0.85 2.52 16 4 C -0.29 -7.08 4.79 -20.14 -0.10 -7.17 16 5 C 0.19 4.81 3.03 29.10 0.09 4.90 16 6 H 0.15 2.77 7.02 -2.39 -0.02 2.75 16 7 O -0.54 -14.27 13.06 -130.75 -1.71 -15.98 16 8 C 0.48 16.89 6.94 87.66 0.61 17.49 16 9 O -0.59 -25.90 15.75 15.20 0.24 -25.66 16 10 N -0.60 -21.02 2.97 -818.90 -2.43 -23.45 16 11 C 0.10 2.64 6.07 86.36 0.52 3.16 16 12 C -0.12 -3.76 6.08 30.67 0.19 -3.58 16 13 C -0.11 -4.59 4.96 30.62 0.15 -4.44 16 14 C 0.04 2.17 2.25 -11.46 -0.03 2.14 16 15 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 16 C -0.54 -29.84 8.56 25.60 0.22 -29.62 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 18 C 0.02 0.96 5.30 84.66 0.45 1.41 16 19 N -0.91 -52.29 11.31 21.45 0.24 -52.05 16 20 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 C 0.13 5.60 5.66 86.36 0.49 6.08 16 25 C 0.05 1.39 11.47 85.24 0.98 2.37 16 26 N -0.33 -9.47 12.58 -57.03 -0.72 -10.19 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.22 1.97 6.89 -2.91 -0.02 1.95 16 31 H 0.39 9.31 8.04 -74.06 -0.60 8.71 16 32 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.11 1.85 2.93 -2.39 -0.01 1.84 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 39 H 0.05 2.39 7.00 -2.39 -0.02 2.38 16 40 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 41 H 0.18 4.64 7.84 -2.91 -0.02 4.62 16 Total: -1.00 -78.06 332.35 2.51 -75.56 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.46 Total: 17.66 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.88 Total: -2.20 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -4.39 Total: -95.11 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.47 Total: -41.64 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.06 2.51 -75.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.561 kcal (2) G-P(sol) polarization free energy of solvation -78.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds