Wall clock time and date at job start Fri Apr 10 2020 17:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30885 * 125.89176 * 2 1 4 4 C 1.33649 * 109.76654 * 179.97438 * 3 2 1 5 5 N 1.39613 * 125.60809 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00149 * 180.02562 * 5 4 3 7 7 C 1.53241 * 109.33973 * 187.25264 * 6 5 4 8 8 N 1.47075 * 108.52064 * 306.17201 * 7 6 5 9 9 C 1.34780 * 120.87669 * 231.18923 * 8 7 6 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 C 1.47074 * 118.24014 * 51.45789 * 8 7 6 22 22 C 1.46904 * 110.99929 * 304.30130 * 5 4 3 23 23 N 1.31198 * 108.78463 * 0.22781 * 4 3 2 24 24 N 1.34338 * 125.89440 * 179.97438 * 2 1 3 25 25 H 0.97004 * 126.76252 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47238 * 90.00363 * 1 2 3 27 27 H 1.09007 * 109.46668 * 209.99710 * 1 2 3 28 28 H 1.08991 * 109.47330 * 329.99971 * 1 2 3 29 29 H 1.09001 * 109.49120 * 67.28900 * 6 5 4 30 30 H 1.09004 * 109.51506 * 307.22621 * 6 5 4 31 31 H 1.09003 * 109.62612 * 186.45868 * 7 6 5 32 32 H 1.09003 * 109.62821 * 65.87958 * 7 6 5 33 33 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 34 34 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 12 11 9 36 36 H 1.08998 * 109.47533 * 59.99628 * 12 11 9 37 37 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.63016 * 68.25422 * 21 8 7 39 39 H 1.09001 * 109.62513 * 188.83332 * 21 8 7 40 40 H 1.08997 * 109.49121 * 292.70788 * 22 5 4 41 41 H 1.08999 * 109.49142 * 52.78587 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0603 0.0000 4 6 3.5583 0.6891 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9171 0.8031 0.0004 7 6 7.0863 1.7768 0.1826 8 7 6.9859 2.8247 -0.8445 9 6 8.0410 3.1315 -1.6250 10 8 9.0910 2.5410 -1.4851 11 6 7.9163 4.2093 -2.6709 12 6 9.2471 4.3581 -3.4111 13 6 9.1223 5.4354 -4.4574 14 1 8.1874 5.9617 -4.5818 15 6 10.2018 5.7500 -5.2553 16 7 10.0930 6.6905 -6.1681 17 14 11.8195 4.8412 -5.0388 18 1 11.8357 3.6435 -5.9166 19 1 12.9444 5.7387 -5.4052 20 1 11.9643 4.4188 -3.6225 21 6 5.7056 3.5331 -0.9931 22 6 4.5893 2.4859 -1.1334 23 7 3.6191 -0.6214 -0.0040 24 7 2.2946 -1.0883 0.0005 25 1 2.0055 -2.0142 0.0012 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 6.0269 0.2759 -0.9473 30 1 5.9125 0.0831 0.8188 31 1 8.0293 1.2419 0.0691 32 1 7.0354 2.2289 1.1732 33 1 7.1340 3.9387 -3.3801 34 1 7.6605 5.1538 -2.1907 35 1 10.0291 4.6290 -2.7017 36 1 9.5034 3.4138 -3.8912 37 1 10.8524 6.9115 -6.7296 38 1 5.5246 4.1507 -0.1135 39 1 5.7354 4.1600 -1.8843 40 1 4.7180 1.9349 -2.0650 41 1 3.6213 2.9868 -1.1373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898183981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:39 Heat of formation + Delta-G solvation = 65.739914 kcal Electronic energy + Delta-G solvation = -23173.506830 eV Core-core repulsion = 19704.642495 eV Total energy + Delta-G solvation = -3468.864335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48466 -40.01653 -38.04944 -34.84230 -33.55248 -32.78963 -32.32286 -31.65463 -30.89642 -28.57900 -27.36603 -25.91682 -23.86536 -22.58200 -21.61260 -20.98059 -20.29107 -18.66038 -18.28175 -17.32718 -16.55039 -16.22893 -15.65943 -15.52829 -15.38796 -15.25041 -14.69761 -14.25632 -14.03819 -13.68702 -13.38157 -13.28536 -13.24505 -12.56824 -12.46749 -12.24772 -12.19473 -11.74528 -11.54229 -11.46683 -11.27852 -10.95658 -10.88526 -10.30804 -10.12250 -10.03328 -10.01348 -9.76775 -9.22733 -9.13364 -8.83479 -8.50558 -8.45692 -6.01544 -4.00168 1.23697 2.18161 2.50216 2.96233 3.08749 3.24584 3.39364 3.45940 3.57210 3.99870 4.27820 4.52540 4.55092 4.73824 4.79964 4.89518 4.98912 5.06475 5.14456 5.20941 5.27636 5.33149 5.34065 5.50544 5.61141 5.70776 5.79689 5.88237 5.90355 6.04967 6.09669 6.34499 6.57991 6.70760 6.72660 6.81319 7.37882 7.44994 7.61443 7.80797 7.81473 8.49993 8.61366 9.01417 9.61654 11.11247 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.002901 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.052294 B = 9650.664503 C =10091.198161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.296 3.704 3 N -0.541 5.541 4 C 0.409 3.591 5 N -0.439 5.439 6 C 0.050 3.950 7 C 0.116 3.884 8 N -0.628 5.628 9 C 0.514 3.486 10 O -0.539 6.539 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.524 4.524 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.114 3.886 22 C 0.051 3.949 23 N -0.347 5.347 24 N -0.482 5.482 25 H 0.440 0.560 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.515 -14.972 14.761 30.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 N -0.273 5.273 4 C 0.039 3.961 5 N -0.163 5.163 6 C -0.078 4.078 7 C -0.007 4.007 8 N -0.365 5.365 9 C 0.305 3.695 10 O -0.414 6.414 11 C -0.161 4.161 12 C -0.037 4.037 13 C -0.562 4.562 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.009 4.009 22 C -0.077 4.077 23 N -0.183 5.183 24 N -0.201 5.201 25 H 0.286 0.714 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.216 -14.878 15.102 29.294 hybrid contribution 0.403 -1.506 -0.525 1.645 sum -19.814 -16.385 14.577 29.555 Atomic orbital electron populations 1.20421 0.83446 1.05133 1.04729 1.24322 0.96583 0.82433 0.94966 1.70237 1.00406 1.29347 1.27310 1.22213 0.90228 0.87419 0.96238 1.58906 0.99192 1.15308 1.42847 1.22553 0.86645 0.95613 1.02951 1.21623 0.98122 0.89159 0.91805 1.48379 1.12610 1.38487 1.36979 1.21580 0.82321 0.84192 0.81400 1.90643 1.27969 1.53165 1.69665 1.21698 1.03256 0.95681 0.95473 1.19378 0.91481 0.97344 0.95452 1.21107 0.99772 1.18770 1.16552 0.90904 1.24970 0.98820 0.94749 0.94703 1.69911 1.31483 1.31137 1.21723 0.86802 0.83413 0.79723 0.79654 1.20290 1.21448 1.18502 1.21956 0.81256 0.93706 1.04027 1.22731 1.01357 0.93848 0.89788 1.78290 0.96630 1.11129 1.32231 1.47683 1.03903 1.09858 1.58682 0.71440 0.88822 0.89769 0.88163 0.92742 0.88717 0.88038 0.90811 0.89663 0.89431 0.95782 0.96338 0.92733 0.90122 0.87726 0.93105 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.30 2.38 8.23 -155.73 -1.28 1.10 16 3 N -0.54 -6.32 10.88 -11.13 -0.12 -6.44 16 4 C 0.41 5.20 7.38 -321.17 -2.37 2.83 16 5 N -0.44 -5.40 4.72 -174.43 -0.82 -6.22 16 6 C 0.05 0.61 5.04 -3.70 -0.02 0.59 16 7 C 0.12 1.50 6.60 -3.60 -0.02 1.48 16 8 N -0.63 -9.17 3.00 -172.18 -0.52 -9.69 16 9 C 0.51 9.65 7.71 -10.98 -0.08 9.56 16 10 O -0.54 -12.10 15.43 5.56 0.09 -12.01 16 11 C -0.12 -2.37 4.00 -27.88 -0.11 -2.49 16 12 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 13 C -0.52 -15.03 9.66 -34.44 -0.33 -15.37 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 17 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 21 C 0.11 1.32 6.53 -3.36 -0.02 1.30 16 22 C 0.05 0.58 5.57 -3.46 -0.02 0.56 16 23 N -0.35 -4.19 11.75 29.99 0.35 -3.84 16 24 N -0.48 -3.88 7.43 32.61 0.24 -3.64 16 25 H 0.44 1.83 8.96 -182.34 -1.63 0.20 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 31 H 0.10 1.43 7.06 -51.93 -0.37 1.06 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.54 7.67 -51.93 -0.40 1.14 16 34 H 0.09 1.57 7.99 -51.93 -0.41 1.16 16 35 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 36 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.15 6.02 -51.93 -0.31 0.83 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.10 7.83 -51.93 -0.41 0.69 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -37.66 336.79 -10.93 -48.59 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -7.25 Total: -4.19 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -4.08 Total: 1.61 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.09 Total: -57.17 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.66 -10.93 -48.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898183981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.328 kcal (2) G-P(sol) polarization free energy of solvation -37.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds