Wall clock time and date at job start Fri Apr 10 2020 17:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30885 * 125.89176 * 2 1 4 4 C 1.33649 * 109.76654 * 179.97438 * 3 2 1 5 5 N 1.39613 * 125.60809 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00149 * 180.02562 * 5 4 3 7 7 C 1.53241 * 109.33973 * 187.25264 * 6 5 4 8 8 N 1.47075 * 108.52064 * 306.17201 * 7 6 5 9 9 C 1.34780 * 120.87669 * 231.18923 * 8 7 6 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 C 1.47074 * 118.24014 * 51.45789 * 8 7 6 22 22 C 1.46904 * 110.99929 * 304.30130 * 5 4 3 23 23 N 1.31198 * 108.78463 * 0.22781 * 4 3 2 24 24 N 1.34338 * 125.89440 * 179.97438 * 2 1 3 25 25 H 0.97004 * 126.76252 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47238 * 90.00363 * 1 2 3 27 27 H 1.09007 * 109.46668 * 209.99710 * 1 2 3 28 28 H 1.08991 * 109.47330 * 329.99971 * 1 2 3 29 29 H 1.09001 * 109.49120 * 67.28900 * 6 5 4 30 30 H 1.09004 * 109.51506 * 307.22621 * 6 5 4 31 31 H 1.09003 * 109.62612 * 186.45868 * 7 6 5 32 32 H 1.09003 * 109.62821 * 65.87958 * 7 6 5 33 33 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 34 34 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 35 35 H 1.09002 * 109.47153 * 299.99998 * 12 11 9 36 36 H 1.08998 * 109.47533 * 59.99628 * 12 11 9 37 37 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 38 38 H 1.08994 * 109.63016 * 68.25422 * 21 8 7 39 39 H 1.09001 * 109.62513 * 188.83332 * 21 8 7 40 40 H 1.08997 * 109.49121 * 292.70788 * 22 5 4 41 41 H 1.08999 * 109.49142 * 52.78587 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0603 0.0000 4 6 3.5583 0.6891 0.0006 5 7 4.6544 1.5538 0.0002 6 6 5.9171 0.8031 0.0004 7 6 7.0863 1.7768 0.1826 8 7 6.9859 2.8247 -0.8445 9 6 8.0410 3.1315 -1.6250 10 8 9.0910 2.5410 -1.4851 11 6 7.9163 4.2093 -2.6709 12 6 9.2471 4.3581 -3.4111 13 6 9.1223 5.4354 -4.4574 14 1 8.1874 5.9617 -4.5818 15 6 10.2018 5.7500 -5.2553 16 7 10.0930 6.6905 -6.1681 17 14 11.8195 4.8412 -5.0388 18 1 11.8357 3.6435 -5.9166 19 1 12.9444 5.7387 -5.4052 20 1 11.9643 4.4188 -3.6225 21 6 5.7056 3.5331 -0.9931 22 6 4.5893 2.4859 -1.1334 23 7 3.6191 -0.6214 -0.0040 24 7 2.2946 -1.0883 0.0005 25 1 2.0055 -2.0142 0.0012 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 6.0269 0.2759 -0.9473 30 1 5.9125 0.0831 0.8188 31 1 8.0293 1.2419 0.0691 32 1 7.0354 2.2289 1.1732 33 1 7.1340 3.9387 -3.3801 34 1 7.6605 5.1538 -2.1907 35 1 10.0291 4.6290 -2.7017 36 1 9.5034 3.4138 -3.8912 37 1 10.8524 6.9115 -6.7296 38 1 5.5246 4.1507 -0.1135 39 1 5.7354 4.1600 -1.8843 40 1 4.7180 1.9349 -2.0650 41 1 3.6213 2.9868 -1.1373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898183981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:38 Heat of formation + Delta-G solvation = 39.685530 kcal Electronic energy + Delta-G solvation = -23174.636633 eV Core-core repulsion = 19704.642495 eV Total energy + Delta-G solvation = -3469.994138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.22781 -41.26666 -39.24277 -35.96474 -35.58907 -33.60546 -33.40773 -32.92531 -32.20613 -29.40065 -28.44277 -27.51991 -24.94876 -23.74732 -22.91418 -21.87551 -21.51176 -19.93607 -19.25080 -18.90949 -18.00933 -17.06347 -16.86922 -16.77035 -16.70151 -16.19077 -16.10897 -15.63258 -15.04377 -14.90175 -14.79049 -14.52243 -13.92354 -13.75763 -13.59167 -13.49199 -13.35137 -12.91729 -12.79416 -12.66727 -12.55009 -12.41823 -12.02677 -11.97075 -11.76203 -11.69084 -11.38348 -11.09462 -10.78969 -10.77300 -10.73895 -9.86673 -9.53064 -8.30697 -6.33206 0.53436 1.33183 1.35364 1.47673 1.50509 1.61977 1.77687 1.94628 2.32228 2.35518 3.05010 3.40184 3.48691 3.64616 3.78849 3.87023 4.05890 4.19516 4.22861 4.29293 4.34834 4.45500 4.51065 4.63656 4.70783 4.73249 4.75852 4.85081 4.92405 5.01265 5.10875 5.14743 5.31560 5.42942 5.44258 5.54962 5.61177 5.91738 6.22433 6.23785 6.32774 6.72976 7.06607 7.16649 7.32094 8.84840 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.002901 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.052294 B = 9650.664503 C =10091.198161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.304 3.696 3 N -0.573 5.573 4 C 0.393 3.607 5 N -0.442 5.442 6 C 0.064 3.936 7 C 0.118 3.882 8 N -0.618 5.618 9 C 0.517 3.483 10 O -0.583 6.583 11 C -0.114 4.114 12 C 0.005 3.995 13 C -0.527 4.527 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.936 3.064 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.262 1.262 21 C 0.112 3.888 22 C 0.058 3.942 23 N -0.377 5.377 24 N -0.472 5.472 25 H 0.456 0.544 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.010 0.990 36 H 0.006 0.994 37 H 0.267 0.733 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.038 0.962 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.369 -16.012 15.963 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.026 3.974 3 N -0.307 5.307 4 C 0.022 3.978 5 N -0.166 5.166 6 C -0.065 4.065 7 C -0.005 4.005 8 N -0.352 5.352 9 C 0.308 3.692 10 O -0.463 6.463 11 C -0.154 4.154 12 C -0.033 4.033 13 C -0.565 4.565 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.761 3.239 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.010 4.010 22 C -0.070 4.070 23 N -0.213 5.213 24 N -0.193 5.193 25 H 0.305 0.695 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.028 0.972 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -22.143 -15.949 16.326 31.799 hybrid contribution 0.776 -1.217 -0.870 1.685 sum -21.367 -17.166 15.456 31.466 Atomic orbital electron populations 1.20684 0.79755 1.06753 1.06173 1.25205 0.98219 0.81461 0.92506 1.70235 1.00254 1.31158 1.29007 1.22331 0.90700 0.87693 0.97034 1.58913 0.99163 1.15523 1.43031 1.22374 0.86466 0.95245 1.02373 1.21710 0.97955 0.88863 0.91943 1.48339 1.12554 1.38339 1.35998 1.21282 0.82621 0.83733 0.81611 1.90626 1.29870 1.54728 1.71077 1.21527 1.00607 0.97281 0.95989 1.19227 0.94212 0.95258 0.94562 1.21415 0.98909 1.19072 1.17075 0.92885 1.25779 1.02319 0.95627 0.94632 1.70017 1.32732 1.32722 1.22864 0.85861 0.79739 0.78831 0.79478 1.19525 1.20325 1.18607 1.22198 0.79611 0.93786 1.05406 1.22666 1.01632 0.93531 0.89133 1.78171 0.99070 1.11122 1.32937 1.47620 1.02690 1.10942 1.58084 0.69475 0.87241 0.86707 0.87942 0.94369 0.87981 0.89326 0.89015 0.88020 0.87582 0.97152 0.97533 0.92394 0.88136 0.86896 0.94317 0.86732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.51 71.24 0.75 0.55 16 2 C 0.30 4.24 8.23 138.24 1.14 5.38 16 3 N -0.57 -12.56 10.88 -189.12 -2.06 -14.61 16 4 C 0.39 9.60 7.38 260.92 1.93 11.53 16 5 N -0.44 -10.41 4.72 -705.77 -3.33 -13.73 16 6 C 0.06 1.50 5.04 86.38 0.44 1.93 16 7 C 0.12 2.94 6.60 86.35 0.57 3.51 16 8 N -0.62 -17.30 3.00 -817.05 -2.45 -19.75 16 9 C 0.52 19.06 7.71 87.66 0.68 19.73 16 10 O -0.58 -26.30 15.43 -3.03 -0.05 -26.35 16 11 C -0.11 -4.38 4.00 29.85 0.12 -4.26 16 12 C 0.01 0.27 3.33 29.85 0.10 0.37 16 13 C -0.53 -30.44 9.66 25.60 0.25 -30.20 16 14 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 15 C 0.01 0.84 5.47 84.65 0.46 1.31 16 16 N -0.94 -59.19 13.96 21.45 0.30 -58.89 16 17 Si 0.94 47.21 27.47 68.60 1.88 49.09 16 18 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.26 -13.15 6.54 99.48 0.65 -12.50 16 21 C 0.11 2.38 6.53 86.51 0.57 2.94 16 22 C 0.06 1.25 5.57 86.54 0.48 1.73 16 23 N -0.38 -8.75 11.75 -59.03 -0.69 -9.44 16 24 N -0.47 -6.75 7.43 -50.73 -0.38 -7.13 16 25 H 0.46 2.82 8.96 -213.10 -1.91 0.91 16 26 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.11 -0.36 8.14 -2.38 -0.02 -0.38 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 2.24 7.86 -2.38 -0.02 2.23 16 31 H 0.09 2.49 7.06 -2.39 -0.02 2.47 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 3.54 7.67 -2.39 -0.02 3.52 16 34 H 0.11 3.65 7.99 -2.39 -0.02 3.63 16 35 H 0.01 0.53 7.15 -2.39 -0.02 0.52 16 36 H 0.01 0.33 7.53 -2.39 -0.02 0.31 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.23 6.02 -2.39 -0.01 2.21 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.11 2.24 7.83 -2.39 -0.02 2.22 16 Total: -1.00 -82.07 336.79 -0.22 -82.29 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -0.92 Total: 4.00 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 7.47 Total: 14.53 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -8.61 Total: -123.56 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.88 Total: 49.09 kcal Total: -82.07 -0.22 -82.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898183981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.978 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds