Wall clock time and date at job start Fri Apr 10 2020 17:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30834 * 125.96037 * 2 1 4 4 C 1.33242 * 109.82816 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52720 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47256 * 89.99498 * 5 4 3 7 7 C 1.34772 * 119.99926 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00132 * 4.99577 * 7 6 5 9 9 N 1.34773 * 120.00051 * 184.99913 * 7 6 5 10 10 C 1.46930 * 120.63140 * 175.05565 * 9 7 6 11 11 C 1.53186 * 108.89474 * 126.46350 * 10 9 7 12 12 C 1.53043 * 109.31535 * 54.56001 * 11 10 9 13 13 C 1.50697 * 109.45964 * 178.62861 * 12 11 10 14 14 H 1.08001 * 120.00093 * 5.41424 * 13 12 11 15 15 C 1.37876 * 119.99820 * 185.40525 * 13 12 11 16 16 N 1.31514 * 120.00028 * 9.48610 * 15 13 12 17 17 Si 1.86806 * 119.99940 * 189.47600 * 15 13 12 18 18 H 1.48497 * 109.46722 * 95.00012 * 17 15 13 19 19 H 1.48497 * 109.46984 * 214.99443 * 17 15 13 20 20 H 1.48497 * 109.47374 * 334.99568 * 17 15 13 21 21 C 1.53037 * 109.53543 * 298.63867 * 12 11 10 22 22 C 1.46959 * 120.65213 * 354.86979 * 9 7 6 23 23 N 1.30717 * 108.94664 * 0.26087 * 4 3 2 24 24 N 1.34432 * 125.95998 * 180.02562 * 2 1 3 25 25 H 0.96996 * 126.82715 * 359.97438 * 24 2 1 26 26 H 1.08991 * 109.47159 * 89.97593 * 1 2 3 27 27 H 1.08999 * 109.47066 * 209.97905 * 1 2 3 28 28 H 1.09004 * 109.46956 * 329.97764 * 1 2 3 29 29 H 1.08995 * 109.47131 * 329.99663 * 5 4 3 30 30 H 1.09001 * 109.47196 * 209.99632 * 5 4 3 31 31 H 0.96998 * 119.99784 * 0.02562 * 6 5 4 32 32 H 1.08997 * 109.58874 * 6.59956 * 10 9 7 33 33 H 1.09004 * 109.58030 * 246.31896 * 10 9 7 34 34 H 1.09002 * 109.50099 * 174.51379 * 11 10 9 35 35 H 1.09005 * 109.49823 * 294.57809 * 11 10 9 36 36 H 1.08997 * 109.45875 * 58.65596 * 12 11 10 37 37 H 0.97006 * 119.99895 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.49401 * 181.31382 * 21 12 11 39 39 H 1.09000 * 109.50033 * 301.41008 * 21 12 11 40 40 H 1.09006 * 109.46709 * 113.75692 * 22 9 7 41 41 H 1.09000 * 109.71437 * 353.46751 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 7 5.1205 1.9257 1.3812 7 6 6.1602 2.7471 1.6277 8 8 6.7226 3.3089 0.7077 9 7 6.5765 2.9457 2.8941 10 6 7.7738 3.7513 3.1708 11 6 7.4114 4.8494 4.1755 12 6 6.7819 4.2125 5.4165 13 6 6.4549 5.2870 6.4213 14 1 6.5925 6.3268 6.1640 15 6 5.9799 4.9426 7.6690 16 7 5.9873 3.6842 8.0511 17 14 5.3261 6.2634 8.8168 18 1 3.8513 6.3592 8.6720 19 1 5.6639 5.9117 10.2194 20 1 5.9433 7.5692 8.4715 21 6 5.4991 3.4782 5.0200 22 6 5.8397 2.3644 4.0249 23 7 3.6194 -0.6168 -0.0066 24 7 2.2964 -1.0881 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4700 2.5473 -0.5133 30 1 5.5742 1.1513 -0.5145 31 1 4.6265 1.5339 2.1183 32 1 8.1307 4.2050 2.2463 33 1 8.5532 3.1150 3.5902 34 1 8.3124 5.3919 4.4623 35 1 6.7010 5.5393 3.7200 36 1 7.4839 3.5047 5.8572 37 1 5.6534 3.4419 8.9291 38 1 5.0388 3.0445 5.9079 39 1 4.8062 4.1805 4.5566 40 1 6.4597 1.6136 4.5150 41 1 4.9205 1.9015 3.6658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898361094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:46 Heat of formation + Delta-G solvation = 53.827583 kcal Electronic energy + Delta-G solvation = -23294.119635 eV Core-core repulsion = 19824.738743 eV Total energy + Delta-G solvation = -3469.380892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.49773 -39.88905 -36.98860 -35.10159 -33.50191 -32.91863 -32.68601 -31.11048 -30.08233 -28.73475 -27.19572 -25.75737 -22.94188 -22.33466 -21.78942 -20.84291 -20.21114 -18.94029 -18.26208 -17.59654 -16.36696 -16.24369 -15.65521 -15.36750 -14.68936 -14.56803 -14.29494 -13.89858 -13.54082 -13.34203 -13.21227 -13.11254 -12.94021 -12.61409 -12.48996 -12.21924 -12.09751 -11.56887 -11.34873 -10.91455 -10.62380 -10.53796 -10.36063 -10.35182 -10.20599 -9.92780 -9.70673 -9.54616 -9.04562 -8.99482 -8.93535 -8.33334 -7.88499 -6.03832 -4.04928 1.18377 2.23463 2.34837 3.20602 3.30020 3.37576 3.41302 3.55756 3.63820 4.20775 4.29461 4.43067 4.43944 4.92241 4.97275 5.27276 5.33092 5.46526 5.55642 5.58199 5.83010 5.88083 5.96751 6.03143 6.09129 6.22083 6.25281 6.50813 6.57460 6.67032 6.68403 6.87995 7.02847 7.13214 7.18288 7.44439 7.67289 7.75126 7.92516 7.98259 8.30238 8.42913 8.94062 8.98911 9.58722 11.04800 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.003476 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.563789 B = 8052.874799 C = 9116.795444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.526 5.526 4 C 0.217 3.783 5 C 0.237 3.763 6 N -0.745 5.745 7 C 0.711 3.289 8 O -0.601 6.601 9 N -0.616 5.616 10 C 0.129 3.871 11 C -0.124 4.124 12 C 0.048 3.952 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.117 4.117 22 C 0.111 3.889 23 N -0.296 5.296 24 N -0.481 5.481 25 H 0.441 0.559 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 -11.345 -14.429 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.004 3.996 3 N -0.255 5.255 4 C -0.066 4.066 5 C 0.110 3.890 6 N -0.405 5.405 7 C 0.413 3.587 8 O -0.481 6.481 9 N -0.352 5.352 10 C 0.007 3.993 11 C -0.162 4.162 12 C 0.029 3.971 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.156 4.156 22 C -0.011 4.011 23 N -0.126 5.126 24 N -0.200 5.200 25 H 0.287 0.713 26 H 0.111 0.889 27 H 0.102 0.898 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.130 -11.065 -14.951 20.720 hybrid contribution -1.216 -0.327 1.185 1.729 sum -10.346 -11.392 -13.767 20.648 Atomic orbital electron populations 1.20424 0.83390 1.05294 1.04644 1.24493 0.96785 0.82692 0.95614 1.70433 1.01236 1.29431 1.24421 1.24231 0.93410 0.90055 0.98881 1.19135 0.89893 0.95700 0.84248 1.45084 1.35148 1.52713 1.07579 1.15688 0.79983 0.79512 0.83531 1.90865 1.60012 1.53713 1.43514 1.47362 1.29822 1.54336 1.03722 1.21595 0.85029 0.92921 0.99762 1.22020 1.00677 0.96698 0.96820 1.18632 0.92444 0.95242 0.90765 1.21190 1.43379 0.92919 0.97629 0.92660 1.24956 0.95897 0.95254 0.97698 1.69957 1.46390 1.16414 1.20062 0.86668 0.79366 0.82397 0.80126 1.20782 1.21368 1.19886 1.21939 1.01060 0.95654 0.96912 1.21850 0.94322 0.97409 0.87567 1.78079 0.96698 1.12335 1.25489 1.48045 1.04275 1.10188 1.57513 0.71330 0.88883 0.89755 0.88063 0.88690 0.89324 0.76524 0.90134 0.92362 0.91990 0.92956 0.94729 0.93086 0.89774 0.93915 0.91869 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.28 2.50 8.24 -155.69 -1.28 1.22 16 3 N -0.53 -6.60 11.19 -8.16 -0.09 -6.69 16 4 C 0.22 2.84 7.51 -156.85 -1.18 1.66 16 5 C 0.24 3.25 6.30 -5.19 -0.03 3.22 16 6 N -0.75 -11.51 5.46 -66.41 -0.36 -11.88 16 7 C 0.71 13.25 8.30 -86.93 -0.72 12.53 16 8 O -0.60 -12.73 15.77 5.29 0.08 -12.65 16 9 N -0.62 -11.52 2.98 -178.47 -0.53 -12.05 16 10 C 0.13 2.44 6.44 -3.71 -0.02 2.42 16 11 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 12 C 0.05 1.14 1.93 -91.73 -0.18 0.97 16 13 C -0.51 -13.79 8.48 -34.44 -0.29 -14.09 16 14 H 0.06 1.49 7.77 -52.49 -0.41 1.09 16 15 C 0.06 1.72 5.19 -17.82 -0.09 1.62 16 16 N -0.89 -24.75 12.15 55.43 0.67 -24.08 16 17 Si 0.89 21.01 29.55 -169.99 -5.02 15.99 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.12 -2.58 5.21 -26.61 -0.14 -2.72 16 22 C 0.11 2.03 6.38 -3.69 -0.02 2.01 16 23 N -0.30 -3.63 12.80 32.42 0.41 -3.22 16 24 N -0.48 -4.06 7.45 32.62 0.24 -3.82 16 25 H 0.44 1.98 8.96 -182.34 -1.63 0.34 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.40 5.83 5.96 -40.82 -0.24 5.59 16 32 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 38 H 0.08 2.04 6.87 -51.92 -0.36 1.68 16 39 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.87 5.66 -51.93 -0.29 0.58 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -33.41 338.46 -10.30 -43.71 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.08 Total: 3.42 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -3.72 Total: 6.17 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.35 Total: -61.74 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.41 -10.30 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898361094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.533 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds