Wall clock time and date at job start Fri Apr 10 2020 17:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30834 * 125.96037 * 2 1 4 4 C 1.33242 * 109.82816 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52720 * 180.02562 * 4 3 2 6 6 N 1.46507 * 109.47256 * 89.99498 * 5 4 3 7 7 C 1.34772 * 119.99926 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00132 * 4.99577 * 7 6 5 9 9 N 1.34773 * 120.00051 * 184.99913 * 7 6 5 10 10 C 1.46930 * 120.63140 * 175.05565 * 9 7 6 11 11 C 1.53186 * 108.89474 * 126.46350 * 10 9 7 12 12 C 1.53043 * 109.31535 * 54.56001 * 11 10 9 13 13 C 1.50697 * 109.45964 * 178.62861 * 12 11 10 14 14 H 1.08001 * 120.00093 * 5.41424 * 13 12 11 15 15 C 1.37876 * 119.99820 * 185.40525 * 13 12 11 16 16 N 1.31514 * 120.00028 * 9.48610 * 15 13 12 17 17 Si 1.86806 * 119.99940 * 189.47600 * 15 13 12 18 18 H 1.48497 * 109.46722 * 95.00012 * 17 15 13 19 19 H 1.48497 * 109.46984 * 214.99443 * 17 15 13 20 20 H 1.48497 * 109.47374 * 334.99568 * 17 15 13 21 21 C 1.53037 * 109.53543 * 298.63867 * 12 11 10 22 22 C 1.46959 * 120.65213 * 354.86979 * 9 7 6 23 23 N 1.30717 * 108.94664 * 0.26087 * 4 3 2 24 24 N 1.34432 * 125.95998 * 180.02562 * 2 1 3 25 25 H 0.96996 * 126.82715 * 359.97438 * 24 2 1 26 26 H 1.08991 * 109.47159 * 89.97593 * 1 2 3 27 27 H 1.08999 * 109.47066 * 209.97905 * 1 2 3 28 28 H 1.09004 * 109.46956 * 329.97764 * 1 2 3 29 29 H 1.08995 * 109.47131 * 329.99663 * 5 4 3 30 30 H 1.09001 * 109.47196 * 209.99632 * 5 4 3 31 31 H 0.96998 * 119.99784 * 0.02562 * 6 5 4 32 32 H 1.08997 * 109.58874 * 6.59956 * 10 9 7 33 33 H 1.09004 * 109.58030 * 246.31896 * 10 9 7 34 34 H 1.09002 * 109.50099 * 174.51379 * 11 10 9 35 35 H 1.09005 * 109.49823 * 294.57809 * 11 10 9 36 36 H 1.08997 * 109.45875 * 58.65596 * 12 11 10 37 37 H 0.97006 * 119.99895 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.49401 * 181.31382 * 21 12 11 39 39 H 1.09000 * 109.50033 * 301.41008 * 21 12 11 40 40 H 1.09006 * 109.46709 * 113.75692 * 22 9 7 41 41 H 1.09000 * 109.71437 * 353.46751 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0002 6 7 5.1205 1.9257 1.3812 7 6 6.1602 2.7471 1.6277 8 8 6.7226 3.3089 0.7077 9 7 6.5765 2.9457 2.8941 10 6 7.7738 3.7513 3.1708 11 6 7.4114 4.8494 4.1755 12 6 6.7819 4.2125 5.4165 13 6 6.4549 5.2870 6.4213 14 1 6.5925 6.3268 6.1640 15 6 5.9799 4.9426 7.6690 16 7 5.9873 3.6842 8.0511 17 14 5.3261 6.2634 8.8168 18 1 3.8513 6.3592 8.6720 19 1 5.6639 5.9117 10.2194 20 1 5.9433 7.5692 8.4715 21 6 5.4991 3.4782 5.0200 22 6 5.8397 2.3644 4.0249 23 7 3.6194 -0.6168 -0.0066 24 7 2.2964 -1.0881 -0.0005 25 1 2.0094 -2.0146 -0.0006 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4700 2.5473 -0.5133 30 1 5.5742 1.1513 -0.5145 31 1 4.6265 1.5339 2.1183 32 1 8.1307 4.2050 2.2463 33 1 8.5532 3.1150 3.5902 34 1 8.3124 5.3919 4.4623 35 1 6.7010 5.5393 3.7200 36 1 7.4839 3.5047 5.8572 37 1 5.6534 3.4419 8.9291 38 1 5.0388 3.0445 5.9079 39 1 4.8062 4.1805 4.5566 40 1 6.4597 1.6136 4.5150 41 1 4.9205 1.9015 3.6658 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898361094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:45 Heat of formation + Delta-G solvation = 31.385092 kcal Electronic energy + Delta-G solvation = -23295.092815 eV Core-core repulsion = 19824.738743 eV Total energy + Delta-G solvation = -3470.354072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.29424 -41.37406 -38.60898 -36.33381 -35.31068 -33.91944 -33.45752 -32.83552 -31.71937 -29.49167 -28.40088 -27.40584 -24.67944 -23.94762 -22.59966 -21.84927 -21.69686 -20.45904 -19.31022 -18.84145 -18.26599 -17.54862 -16.72744 -16.66272 -16.48507 -15.69149 -15.46618 -15.27102 -14.90144 -14.65000 -14.52231 -14.29413 -14.08640 -13.72287 -13.68168 -13.54184 -13.25710 -13.14110 -12.80437 -12.77844 -12.47313 -12.17491 -12.02857 -11.51521 -11.41477 -11.21416 -11.19719 -10.88672 -10.82425 -10.63326 -10.39744 -10.31432 -9.42695 -8.10885 -6.18364 0.38796 1.35448 1.41401 1.44027 1.53086 1.61695 1.97984 2.09706 2.45471 2.82719 2.95484 3.18858 3.44276 3.82749 4.05936 4.21294 4.35627 4.39359 4.41987 4.48086 4.60222 4.65423 4.71005 4.73407 4.90471 4.97436 5.02157 5.11827 5.19568 5.21892 5.22994 5.31166 5.36469 5.47608 5.67211 5.95479 5.99491 6.04181 6.13769 6.40064 6.87615 6.91597 6.96314 7.47917 7.48230 8.96597 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017812 B = 0.003476 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.563789 B = 8052.874799 C = 9116.795444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.290 3.710 3 N -0.563 5.563 4 C 0.206 3.794 5 C 0.240 3.760 6 N -0.733 5.733 7 C 0.711 3.289 8 O -0.628 6.628 9 N -0.619 5.619 10 C 0.135 3.865 11 C -0.114 4.114 12 C 0.046 3.954 13 C -0.535 4.535 14 H 0.047 0.953 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.945 3.055 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.107 4.107 22 C 0.123 3.877 23 N -0.318 5.318 24 N -0.467 5.467 25 H 0.458 0.542 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.010 0.990 37 H 0.261 0.739 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 -12.343 -14.952 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.013 3.987 3 N -0.294 5.294 4 C -0.077 4.077 5 C 0.114 3.886 6 N -0.392 5.392 7 C 0.412 3.588 8 O -0.509 6.509 9 N -0.355 5.355 10 C 0.013 3.987 11 C -0.152 4.152 12 C 0.027 3.973 13 C -0.573 4.573 14 H 0.065 0.935 15 C -0.179 4.179 16 N -0.552 5.552 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.146 4.146 22 C 0.000 4.000 23 N -0.149 5.149 24 N -0.188 5.188 25 H 0.308 0.692 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.240 0.760 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.702 -12.107 -15.482 22.379 hybrid contribution -0.801 -0.061 1.327 1.551 sum -11.503 -12.168 -14.155 21.926 Atomic orbital electron populations 1.20681 0.79913 1.06622 1.06262 1.25293 0.98330 0.81780 0.93309 1.70405 1.01370 1.31433 1.26208 1.23973 0.93467 0.90178 1.00055 1.19105 0.90639 0.95878 0.83026 1.45000 1.33981 1.51571 1.08642 1.15768 0.80360 0.79655 0.83009 1.90845 1.61057 1.54866 1.44165 1.47355 1.29814 1.54425 1.03935 1.21506 0.85480 0.92559 0.99196 1.21872 1.00314 0.97071 0.95973 1.18592 0.92902 0.94379 0.91419 1.21522 1.43718 0.93271 0.98754 0.93470 1.25616 0.96063 0.97124 0.99104 1.70048 1.46870 1.17800 1.20466 0.85750 0.78796 0.80041 0.78310 1.20296 1.20954 1.19671 1.21710 0.99623 0.96342 0.96905 1.21698 0.95626 0.95944 0.86700 1.77970 0.98948 1.12038 1.25974 1.47967 1.03003 1.11232 1.56620 0.69208 0.86938 0.86723 0.88377 0.89237 0.89024 0.75967 0.89810 0.91082 0.91551 0.93997 0.97188 0.92985 0.92091 0.94904 0.91315 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.29 4.51 8.24 138.23 1.14 5.65 16 3 N -0.56 -13.50 11.19 -179.72 -2.01 -15.51 16 4 C 0.21 5.22 7.51 138.63 1.04 6.26 16 5 C 0.24 6.48 6.30 85.63 0.54 7.02 16 6 N -0.73 -21.98 5.46 -482.30 -2.63 -24.61 16 7 C 0.71 25.87 8.30 179.06 1.49 27.36 16 8 O -0.63 -26.24 15.77 -4.00 -0.06 -26.30 16 9 N -0.62 -22.62 2.98 -836.83 -2.49 -25.12 16 10 C 0.14 5.01 6.44 86.36 0.56 5.56 16 11 C -0.11 -4.77 5.30 30.67 0.16 -4.60 16 12 C 0.05 2.22 1.93 -11.51 -0.02 2.20 16 13 C -0.53 -29.10 8.48 25.60 0.22 -28.89 16 14 H 0.05 2.58 7.77 -2.91 -0.02 2.56 16 15 C 0.02 1.10 5.19 84.65 0.44 1.54 16 16 N -0.91 -51.17 12.15 21.45 0.26 -50.91 16 17 Si 0.94 43.16 29.55 68.60 2.03 45.19 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.11 -4.74 5.21 30.67 0.16 -4.58 16 22 C 0.12 4.37 6.38 86.36 0.55 4.92 16 23 N -0.32 -7.41 12.80 -51.33 -0.66 -8.06 16 24 N -0.47 -6.87 7.45 -50.70 -0.38 -7.25 16 25 H 0.46 2.91 8.96 -213.10 -1.91 1.00 16 26 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.40 11.26 5.96 -92.71 -0.55 10.70 16 32 H 0.08 3.08 6.99 -2.39 -0.02 3.06 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 37 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 38 H 0.06 2.99 6.87 -2.38 -0.02 2.97 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.08 2.46 5.66 -2.39 -0.01 2.45 16 Total: -1.00 -71.97 338.46 -0.33 -72.29 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -1.39 Total: 17.48 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 7.02 Total: 22.81 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -7.91 Total: -131.46 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.06 Total: -26.30 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -71.97 -0.33 -72.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898361094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.676 kcal (2) G-P(sol) polarization free energy of solvation -71.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds