Wall clock time and date at job start Fri Apr 10 2020 17:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09001 * 109.46284 * 301.21051 * 5 4 2 7 7 N 1.46509 * 109.45726 * 181.25630 * 5 4 2 8 8 C 1.34774 * 119.99718 * 154.93248 * 7 5 4 9 9 O 1.21560 * 120.00146 * 359.97438 * 8 7 5 10 10 C 1.47870 * 120.00098 * 180.02562 * 8 7 5 11 11 N 1.34554 * 126.04560 * 359.68372 * 10 8 7 12 12 C 1.30868 * 107.26880 * 179.89705 * 11 10 8 13 13 N 1.34586 * 107.62403 * 0.36530 * 12 11 10 14 14 C 1.46502 * 125.74768 * 179.80262 * 13 12 11 15 15 N 1.28845 * 108.50287 * 359.76870 * 13 12 11 16 16 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 17 17 C 1.53193 * 109.30963 * 298.63474 * 16 5 4 18 18 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 19 19 C 1.36942 * 120.62997 * 353.41990 * 18 2 1 20 20 H 1.07996 * 119.99665 * 29.58632 * 19 18 2 21 21 C 1.38808 * 119.99877 * 209.58916 * 19 18 2 22 22 N 1.31618 * 120.00552 * 15.52077 * 21 19 18 23 23 Si 1.86804 * 119.99669 * 195.52646 * 21 19 18 24 24 H 1.48498 * 109.47155 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.46909 * 300.00011 * 23 21 19 26 26 H 1.48501 * 109.47361 * 59.99417 * 23 21 19 27 27 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 28 28 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 29 29 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 30 30 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 31 31 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 32 32 H 0.96997 * 120.00491 * 334.93339 * 7 5 4 33 33 H 1.07997 * 126.18815 * 180.13157 * 12 11 10 34 34 H 1.09001 * 109.46895 * 269.98810 * 14 13 12 35 35 H 1.09005 * 109.47285 * 29.98154 * 14 13 12 36 36 H 1.08997 * 109.47495 * 149.98992 * 14 13 12 37 37 H 1.08996 * 109.49796 * 178.68040 * 16 5 4 38 38 H 1.09000 * 109.52406 * 58.60257 * 16 5 4 39 39 H 1.08998 * 109.58588 * 294.84653 * 17 16 5 40 40 H 1.08997 * 109.70252 * 174.49039 * 17 16 5 41 41 H 0.96996 * 120.00275 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0058 0.1477 -1.0996 7 7 4.0578 -1.5119 -2.3805 8 6 5.3217 -1.3001 -2.7977 9 8 6.0517 -0.5561 -2.1721 10 6 5.8202 -1.9717 -4.0171 11 7 5.1226 -2.8188 -4.7958 12 6 5.9130 -3.1911 -5.7701 13 7 7.0989 -2.5812 -5.5885 14 6 8.2750 -2.7226 -6.4505 15 7 7.0254 -1.8514 -4.5292 16 6 3.9524 -1.6685 0.0581 17 6 3.4644 -0.9518 1.3211 18 7 2.0225 -0.6995 1.1944 19 6 1.1536 -1.1135 2.1685 20 1 0.1387 -1.3771 1.9102 21 6 1.5774 -1.1943 3.4879 22 7 2.6899 -0.5972 3.8596 23 14 0.5687 -2.1506 4.7359 24 1 1.2311 -2.0838 6.0633 25 1 -0.7904 -1.5597 4.8311 26 1 0.4631 -3.5679 4.3055 27 1 -0.3633 0.5083 0.8931 28 1 -0.3633 0.5193 -0.8868 29 1 -0.3634 -1.0276 -0.0064 30 1 1.7632 -0.1564 -2.1349 31 1 1.5964 -1.7169 -1.2937 32 1 3.4753 -2.1053 -2.8800 33 1 5.6607 -3.8685 -6.5725 34 1 8.8879 -3.5513 -6.0958 35 1 7.9542 -2.9199 -7.4734 36 1 8.8580 -1.8020 -6.4237 37 1 5.0363 -1.7760 0.0965 38 1 3.4910 -2.6543 -0.0021 39 1 3.9928 -0.0049 1.4310 40 1 3.6506 -1.5776 2.1938 41 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947277084.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:16 Heat of formation + Delta-G solvation = 80.177434 kcal Electronic energy + Delta-G solvation = -23580.196930 eV Core-core repulsion = 20111.958653 eV Total energy + Delta-G solvation = -3468.238277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.61380 -39.48738 -37.54784 -34.85475 -34.49165 -32.35889 -31.93891 -31.28419 -29.60146 -28.01738 -26.30637 -25.00393 -23.90153 -22.56134 -21.82173 -20.90934 -20.00588 -19.29052 -18.11448 -16.99154 -16.61223 -16.16696 -15.97661 -15.18828 -14.81622 -14.62329 -13.97946 -13.87330 -13.65216 -13.54510 -13.43021 -13.18628 -12.73298 -12.58884 -12.14747 -11.53789 -11.15495 -11.05144 -10.88091 -10.83744 -10.66710 -10.64461 -10.60123 -10.27468 -10.13787 -9.99780 -9.94864 -9.74835 -9.66847 -9.35276 -8.64349 -8.35832 -6.57178 -5.71139 -3.15095 1.28228 1.95377 1.96491 3.17745 3.42752 3.47587 3.48797 3.49423 3.95907 4.11104 4.54539 4.55024 4.56333 4.81547 4.89758 5.33680 5.44725 5.48464 5.65742 5.78559 5.85892 6.05414 6.09276 6.22423 6.23755 6.32356 6.38366 6.48432 6.50100 6.59061 6.71105 6.86683 6.95146 7.09427 7.16918 7.44943 7.61533 7.75942 7.88373 7.93142 8.39201 8.53654 9.28713 9.92449 10.50005 11.37750 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031196 B = 0.003227 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.348935 B = 8675.733438 C = 8970.559336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.084 0.916 7 N -0.701 5.701 8 C 0.609 3.391 9 O -0.518 6.518 10 C 0.149 3.851 11 N -0.485 5.485 12 C 0.188 3.812 13 N -0.309 5.309 14 C 0.086 3.914 15 N -0.255 5.255 16 C -0.148 4.148 17 C 0.176 3.824 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.291 1.291 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.405 0.595 33 H 0.226 0.774 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.021 0.979 40 H 0.088 0.912 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -5.979 -22.616 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.102 0.898 7 N -0.352 5.352 8 C 0.390 3.610 9 O -0.391 6.391 10 C -0.131 4.131 11 N -0.210 5.210 12 C -0.108 4.108 13 N -0.104 5.104 14 C -0.055 4.055 15 N -0.094 5.094 16 C -0.188 4.188 17 C 0.049 3.951 18 N -0.311 5.311 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.217 1.217 25 H -0.209 1.209 26 H -0.211 1.211 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.240 0.760 33 H 0.242 0.758 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.107 0.893 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.559 -5.095 -21.608 23.452 hybrid contribution -0.500 -1.132 -0.021 1.238 sum 7.059 -6.227 -21.629 23.588 Atomic orbital electron populations 1.21791 0.95746 1.01387 1.00350 1.20269 0.93094 0.93648 0.86568 0.95521 1.22320 0.93410 1.01874 0.99765 1.21144 0.94505 0.96778 0.82667 0.89779 1.46046 1.12071 1.48374 1.28711 1.16322 0.82668 0.80861 0.81138 1.90844 1.56208 1.36620 1.55443 1.23983 0.88389 1.00799 0.99956 1.71281 1.31415 1.13637 1.04676 1.26483 0.82712 1.00801 1.00800 1.47398 1.13197 1.31152 1.18656 1.22233 0.85039 1.05416 0.92767 1.74369 1.21303 1.14421 0.99291 1.22595 0.99874 0.99666 0.96696 1.20737 0.83288 0.97326 0.93725 1.44145 1.03026 1.64873 1.19038 1.19117 0.95071 1.37767 0.86136 0.91319 1.25101 0.97888 0.99600 0.96983 1.70012 1.23993 1.43836 1.16796 0.86408 0.79594 0.80237 0.80720 1.21736 1.20945 1.21101 0.91848 0.94294 0.92776 0.92484 0.91623 0.76047 0.75805 0.89154 0.88033 0.88188 0.92794 0.92487 0.96056 0.89339 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.94 37.16 0.29 -2.23 16 2 C 0.17 3.57 3.48 -67.83 -0.24 3.33 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.34 4.81 -26.83 -0.13 -2.47 16 5 C 0.15 2.82 2.42 -67.88 -0.16 2.65 16 6 H 0.08 1.71 7.57 -51.93 -0.39 1.32 16 7 N -0.70 -11.47 5.07 -54.69 -0.28 -11.75 16 8 C 0.61 10.92 7.80 -12.32 -0.10 10.82 16 9 O -0.52 -11.10 16.75 5.31 0.09 -11.01 16 10 C 0.15 2.31 7.96 -156.35 -1.24 1.06 16 11 N -0.48 -6.15 11.09 -12.37 -0.14 -6.29 16 12 C 0.19 1.56 12.62 -90.48 -1.14 0.42 16 13 N -0.31 -2.80 3.72 -69.39 -0.26 -3.05 16 14 C 0.09 0.28 11.38 59.85 0.68 0.96 16 15 N -0.25 -3.65 12.08 32.07 0.39 -3.26 16 16 C -0.15 -3.08 5.65 -26.61 -0.15 -3.23 16 17 C 0.18 4.34 5.29 -3.71 -0.02 4.32 16 18 N -0.59 -14.64 2.99 -165.03 -0.49 -15.13 16 19 C -0.25 -6.77 8.57 -15.06 -0.13 -6.90 16 20 H 0.07 1.79 6.23 -52.49 -0.33 1.47 16 21 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 22 N -0.90 -26.53 11.23 55.49 0.62 -25.90 16 23 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 5.79 8.31 -40.82 -0.34 5.45 16 33 H 0.23 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -35.67 337.80 -8.37 -44.04 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.95 Total: 1.74 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.42 Total: 8.74 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.16 Total: -65.39 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.67 -8.37 -44.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277084.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.217 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds