Wall clock time and date at job start Fri Apr 10 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.69780 * 2 1 4 4 C 1.53190 * 109.58306 * 120.35605 * 2 1 3 5 5 C 1.53039 * 109.31264 * 174.42109 * 4 2 1 6 6 H 1.09009 * 109.44572 * 58.64677 * 5 4 2 7 7 N 1.46495 * 109.46160 * 178.61192 * 5 4 2 8 8 C 1.34782 * 120.00150 * 205.07180 * 7 5 4 9 9 O 1.21554 * 119.99935 * 359.97438 * 8 7 5 10 10 C 1.47867 * 120.00174 * 179.73075 * 8 7 5 11 11 N 1.34554 * 126.04800 * 0.02562 * 10 8 7 12 12 C 1.30868 * 107.27104 * 179.97438 * 11 10 8 13 13 N 1.34586 * 107.62263 * 0.02562 * 12 11 10 14 14 C 1.46500 * 125.74789 * 180.02562 * 13 12 11 15 15 N 1.28850 * 108.50674 * 359.75165 * 13 12 11 16 16 C 1.53038 * 109.53810 * 298.63592 * 5 4 2 17 17 C 1.53193 * 109.31261 * 61.36368 * 16 5 4 18 18 N 1.46917 * 109.58540 * 239.64318 * 2 1 3 19 19 C 1.36936 * 120.63533 * 6.58569 * 18 2 1 20 20 H 1.07999 * 119.99763 * 330.17764 * 19 18 2 21 21 C 1.38812 * 120.00586 * 150.17443 * 19 18 2 22 22 N 1.31622 * 119.99803 * 344.49655 * 21 19 18 23 23 Si 1.86790 * 120.00258 * 164.49615 * 21 19 18 24 24 H 1.48502 * 109.47416 * 90.00409 * 23 21 19 25 25 H 1.48505 * 109.47327 * 210.00306 * 23 21 19 26 26 H 1.48503 * 109.47413 * 330.00283 * 23 21 19 27 27 H 1.08996 * 109.47686 * 180.35457 * 1 2 3 28 28 H 1.09007 * 109.47267 * 300.35760 * 1 2 3 29 29 H 1.09007 * 109.46860 * 60.35092 * 1 2 3 30 30 H 1.09000 * 109.50192 * 54.46652 * 4 2 1 31 31 H 1.09003 * 109.49507 * 294.37352 * 4 2 1 32 32 H 0.96995 * 120.00054 * 25.07172 * 7 5 4 33 33 H 1.07997 * 126.18715 * 180.02562 * 12 11 10 34 34 H 1.08994 * 109.47842 * 89.99413 * 14 13 12 35 35 H 1.09001 * 109.46944 * 210.00264 * 14 13 12 36 36 H 1.09007 * 109.46610 * 329.99620 * 14 13 12 37 37 H 1.09006 * 109.49630 * 181.31272 * 16 5 4 38 38 H 1.08996 * 109.49870 * 301.40896 * 16 5 4 39 39 H 1.09005 * 109.58737 * 65.15511 * 17 16 5 40 40 H 1.09000 * 109.58741 * 185.57856 * 17 16 5 41 41 H 0.96996 * 120.00132 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5674 -0.8481 1.1702 6 1 4.0059 0.1474 1.0993 7 7 4.0650 -1.5158 2.3754 8 6 5.3289 -1.3011 2.7917 9 8 6.0559 -0.5538 2.1668 10 6 5.8293 -1.9704 4.0116 11 7 5.1321 -2.8136 4.7947 12 6 5.9253 -3.1872 5.7663 13 7 7.1099 -2.5751 5.5833 14 6 8.2871 -2.7142 6.4441 15 7 7.0360 -1.8507 4.5202 16 6 3.9568 -1.6658 -0.0634 17 6 3.4650 -0.9470 -1.3237 18 7 2.0225 -0.6995 -1.1944 19 6 1.1537 -1.1135 -2.1685 20 1 0.1398 -1.3807 -1.9097 21 6 1.5760 -1.1896 -3.4887 22 7 2.6865 -0.5886 -3.8600 23 14 0.5683 -2.1449 -4.7380 24 1 -0.4258 -1.2396 -5.3686 25 1 1.4684 -2.6961 -5.7827 26 1 -0.1390 -3.2586 -4.0562 27 1 -0.3634 -1.0276 0.0064 28 1 -0.3634 0.5194 0.8868 29 1 -0.3633 0.5084 -0.8932 30 1 1.6028 -1.7253 1.2914 31 1 1.7659 -0.1668 2.1368 32 1 3.4850 -2.1124 2.8739 33 1 5.6746 -3.8642 6.5695 34 1 8.9011 -3.5418 6.0893 35 1 8.8684 -1.7925 6.4164 36 1 7.9675 -2.9115 7.4674 37 1 5.0412 -1.7696 -0.1036 38 1 3.4983 -2.6529 -0.0052 39 1 3.9904 0.0020 -1.4316 40 1 3.6518 -1.5718 -2.1971 41 1 2.9818 -0.6421 -4.7824 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947277085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:18 Heat of formation + Delta-G solvation = 54.837156 kcal Electronic energy + Delta-G solvation = -23579.504233 eV Core-core repulsion = 20110.167119 eV Total energy + Delta-G solvation = -3469.337114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.43882 -40.95165 -39.21820 -36.19591 -35.52800 -34.19901 -32.98066 -32.78212 -31.36588 -28.81340 -27.88339 -26.71141 -25.15233 -23.76266 -23.18351 -22.26648 -21.48882 -20.94100 -19.21960 -18.22913 -17.76613 -17.40253 -17.32148 -16.92011 -15.97636 -15.92123 -15.68416 -15.48353 -15.11296 -14.82418 -14.56270 -14.38401 -13.96577 -13.89651 -13.31976 -12.95440 -12.85172 -12.70557 -12.69477 -12.59643 -12.34317 -12.10065 -11.87828 -11.71404 -11.55437 -11.53477 -11.51245 -11.44836 -11.09864 -10.61478 -10.52764 -10.07318 -8.62234 -7.81709 -5.28395 0.29088 1.13033 1.29946 1.48786 1.50503 1.59712 2.05656 2.24284 2.54841 3.09138 3.34643 3.48999 3.62034 3.83535 3.92177 4.04870 4.26963 4.35706 4.39179 4.41947 4.62246 4.70030 4.71118 4.76212 4.79330 4.84542 4.96674 5.07249 5.08849 5.16635 5.31833 5.39243 5.43016 5.53359 5.57907 5.67370 5.72044 5.75474 6.37683 6.45607 6.95706 7.11340 7.19053 7.90672 8.44483 9.26093 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.003225 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.242756 B = 8678.915444 C = 8974.626096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.013 0.987 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.062 0.938 7 N -0.686 5.686 8 C 0.607 3.393 9 O -0.566 6.566 10 C 0.119 3.881 11 N -0.508 5.508 12 C 0.208 3.792 13 N -0.301 5.301 14 C 0.074 3.926 15 N -0.287 5.287 16 C -0.132 4.132 17 C 0.185 3.815 18 N -0.603 5.603 19 C -0.249 4.249 20 H 0.081 0.919 21 C -0.057 4.057 22 N -0.941 5.941 23 Si 0.965 3.035 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.266 1.266 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.418 0.582 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.043 0.957 38 H 0.063 0.937 39 H -0.010 1.010 40 H 0.055 0.945 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 -7.987 26.329 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.080 0.920 7 N -0.337 5.337 8 C 0.390 3.610 9 O -0.442 6.442 10 C -0.160 4.160 11 N -0.234 5.234 12 C -0.086 4.086 13 N -0.096 5.096 14 C -0.064 4.064 15 N -0.129 5.129 16 C -0.172 4.172 17 C 0.059 3.941 18 N -0.327 5.327 19 C -0.379 4.379 20 H 0.098 0.902 21 C -0.252 4.252 22 N -0.588 5.588 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.191 1.191 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.256 0.744 33 H 0.299 0.701 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.165 0.835 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.008 0.992 40 H 0.074 0.926 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.420 -7.138 25.405 27.158 hybrid contribution -0.030 -0.510 -0.969 1.095 sum 6.389 -7.647 24.436 26.389 Atomic orbital electron populations 1.21708 0.93660 1.01784 1.01209 1.20639 0.94856 0.92906 0.86225 0.96885 1.22204 0.91831 1.02503 0.99141 1.20820 0.95451 0.95295 0.82650 0.92009 1.45741 1.12079 1.47938 1.27974 1.16702 0.82384 0.80201 0.81693 1.90806 1.57533 1.38607 1.57295 1.23372 0.89443 1.02985 1.00166 1.71208 1.32558 1.13881 1.05737 1.27555 0.81371 0.99411 1.00306 1.47836 1.14959 1.29614 1.17195 1.22777 0.83715 1.05869 0.94078 1.74271 1.21203 1.16232 1.01155 1.22340 0.99051 0.99721 0.96095 1.20423 0.83785 0.95478 0.94457 1.44422 1.02567 1.65596 1.20076 1.19545 0.95681 1.36170 0.86476 0.90160 1.25901 0.99169 1.01065 0.99073 1.70204 1.26133 1.45914 1.16539 0.85314 0.77740 0.78865 0.78774 1.21212 1.22576 1.19108 0.92539 0.90405 0.94013 0.90449 0.89149 0.74416 0.70052 0.87589 0.88677 0.83510 0.93802 0.91854 0.99218 0.92627 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.45 7.95 71.98 0.57 -3.88 16 2 C 0.16 6.55 3.50 44.98 0.16 6.71 16 3 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.12 -3.87 4.84 30.67 0.15 -3.72 16 5 C 0.16 6.02 2.42 45.02 0.11 6.13 16 6 H 0.06 2.61 7.58 -2.38 -0.02 2.59 16 7 N -0.69 -22.09 5.07 -445.25 -2.26 -24.35 16 8 C 0.61 22.12 7.80 86.79 0.68 22.80 16 9 O -0.57 -25.38 16.75 -3.88 -0.07 -25.45 16 10 C 0.12 3.63 7.96 137.12 1.09 4.72 16 11 N -0.51 -11.70 11.09 -193.03 -2.14 -13.84 16 12 C 0.21 2.63 12.62 180.30 2.27 4.90 16 13 N -0.30 -4.59 3.72 -373.46 -1.39 -5.98 16 14 C 0.07 0.21 11.38 127.77 1.45 1.66 16 15 N -0.29 -8.00 12.08 -52.44 -0.63 -8.63 16 16 C -0.13 -5.65 5.65 30.67 0.17 -5.48 16 17 C 0.19 9.64 5.28 86.36 0.46 10.10 16 18 N -0.60 -30.57 2.99 -675.24 -2.02 -32.59 16 19 C -0.25 -13.49 8.57 84.03 0.72 -12.77 16 20 H 0.08 4.12 6.24 -2.91 -0.02 4.10 16 21 C -0.06 -3.26 4.94 84.86 0.42 -2.85 16 22 N -0.94 -57.78 11.23 21.65 0.24 -57.53 16 23 Si 0.96 45.58 29.58 68.60 2.03 47.60 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 28 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.04 1.63 7.63 -2.38 -0.02 1.61 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.42 11.23 8.31 -92.71 -0.77 10.46 16 33 H 0.28 -0.30 8.06 -2.91 -0.02 -0.32 16 34 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 35 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.15 -0.89 8.14 -2.38 -0.02 -0.91 16 37 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 40 H 0.06 3.24 6.15 -2.39 -0.01 3.22 16 41 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -83.61 337.85 2.29 -81.32 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.27 Total: 11.13 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 8.25 Total: 28.32 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -8.20 Total: -142.92 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -83.61 2.29 -81.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.156 kcal (2) G-P(sol) polarization free energy of solvation -83.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds