Wall clock time and date at job start Fri Apr 10 2020 17:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.08999 * 109.46845 * 301.22059 * 5 4 2 7 7 N 1.46502 * 109.44885 * 181.25664 * 5 4 2 8 8 C 1.34777 * 119.99989 * 154.94231 * 7 5 4 9 9 O 1.21548 * 120.00166 * 359.97438 * 8 7 5 10 10 C 1.47874 * 119.99879 * 180.02562 * 8 7 5 11 11 N 1.34547 * 126.05023 * 359.68408 * 10 8 7 12 12 C 1.30870 * 107.27325 * 179.89614 * 11 10 8 13 13 N 1.34589 * 107.62077 * 0.36635 * 12 11 10 14 14 C 1.46496 * 125.74678 * 179.72929 * 13 12 11 15 15 N 1.28855 * 108.50476 * 359.76794 * 13 12 11 16 16 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 17 17 C 1.53188 * 109.30760 * 298.63191 * 16 5 4 18 18 N 1.46920 * 108.77580 * 54.63833 * 17 16 5 19 19 C 1.36939 * 120.63582 * 126.36663 * 18 17 16 20 20 H 1.07995 * 120.00292 * 209.22921 * 19 18 17 21 21 C 1.38821 * 119.99775 * 29.22866 * 19 18 17 22 22 N 1.31613 * 119.99866 * 24.23336 * 21 19 18 23 23 Si 1.86800 * 119.99862 * 204.23488 * 21 19 18 24 24 H 1.48493 * 109.46799 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46833 * 299.99850 * 23 21 19 26 26 H 1.48503 * 109.47246 * 59.99528 * 23 21 19 27 27 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 28 28 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 29 29 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 30 30 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 31 31 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 32 32 H 0.97002 * 120.00297 * 334.94176 * 7 5 4 33 33 H 1.07992 * 126.19058 * 180.13300 * 12 11 10 34 34 H 1.09004 * 109.47242 * 270.01977 * 14 13 12 35 35 H 1.09006 * 109.47284 * 30.01948 * 14 13 12 36 36 H 1.09000 * 109.47110 * 150.02165 * 14 13 12 37 37 H 1.09004 * 109.49599 * 178.68183 * 16 5 4 38 38 H 1.08999 * 109.49891 * 58.58386 * 16 5 4 39 39 H 1.08993 * 109.59025 * 294.84561 * 17 16 5 40 40 H 1.09004 * 109.70226 * 174.48951 * 17 16 5 41 41 H 0.97003 * 120.00561 * 5.76988 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2811 1.0996 7 7 2.1016 -2.8894 2.3804 8 6 1.4763 -4.0080 2.7978 9 8 0.5300 -4.4446 2.1724 10 6 1.9410 -4.7035 4.0173 11 7 2.9736 -4.3321 4.7958 12 6 3.0580 -5.2016 5.7702 13 7 2.0841 -6.1127 5.5887 14 6 1.8221 -7.2684 6.4500 15 7 1.4216 -5.7977 4.5294 16 6 2.2843 -2.8431 -0.0582 17 6 1.7740 -2.1421 -1.3211 18 7 2.0226 -0.6996 -1.1945 19 6 2.7052 -0.0210 -2.1685 20 1 3.2873 0.8517 -1.9118 21 6 2.6490 -0.4549 -3.4860 22 7 1.6257 -1.1718 -3.8996 23 14 4.0259 -0.0214 -4.6716 24 1 3.7298 -0.6000 -6.0067 25 1 4.1351 1.4552 -4.7846 26 1 5.3075 -0.5753 -4.1657 27 1 -0.3634 -1.0276 0.0063 28 1 -0.3633 0.5194 0.8867 29 1 -0.3633 0.5084 -0.8931 30 1 1.5987 -0.2724 2.1349 31 1 3.1241 -0.6413 1.2936 32 1 2.8566 -2.5408 2.8797 33 1 3.7808 -5.1921 6.5725 34 1 2.3960 -8.1242 6.0944 35 1 2.1163 -7.0334 7.4730 36 1 0.7590 -7.5076 6.4235 37 1 2.0200 -3.8999 -0.0966 38 1 3.3678 -2.7405 0.0022 39 1 0.7043 -2.3203 -1.4310 40 1 2.3004 -2.5283 -2.1940 41 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947277086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:20 Heat of formation + Delta-G solvation = 51.236810 kcal Electronic energy + Delta-G solvation = -23738.513001 eV Core-core repulsion = 20269.019764 eV Total energy + Delta-G solvation = -3469.493237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.46258 -41.09124 -39.45776 -36.29872 -35.56724 -34.44187 -32.81953 -32.63674 -31.25327 -29.02383 -28.31329 -26.20824 -25.19715 -23.71419 -23.55255 -22.77354 -21.63164 -20.35422 -19.57763 -18.78162 -17.79650 -17.56696 -17.37664 -16.38524 -16.13057 -15.94202 -15.67802 -15.42423 -15.15734 -15.10972 -14.60024 -14.28860 -13.98504 -13.95737 -13.80586 -13.45053 -12.87565 -12.79667 -12.65035 -12.51498 -12.33640 -11.97974 -11.93946 -11.78828 -11.58791 -11.50576 -11.47945 -11.46984 -11.05526 -10.63936 -10.44639 -10.14331 -8.91134 -8.20993 -5.37491 0.26136 1.10276 1.27140 1.59979 1.68054 1.86258 2.01691 2.20903 2.68155 3.05778 3.25343 3.44406 3.51753 3.71477 3.88476 3.93592 4.18013 4.28624 4.33939 4.39275 4.40334 4.55451 4.61204 4.68592 4.71336 4.74299 4.81498 4.96721 4.98005 5.05883 5.15798 5.21259 5.26485 5.29561 5.37659 5.54821 5.65058 5.90722 6.32674 6.42759 6.91771 7.07561 7.09786 7.80968 8.27459 9.04604 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.003284 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.008866 B = 8523.357447 C = 8717.038233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.071 0.929 7 N -0.687 5.687 8 C 0.608 3.392 9 O -0.565 6.565 10 C 0.118 3.882 11 N -0.508 5.508 12 C 0.208 3.792 13 N -0.300 5.300 14 C 0.074 3.926 15 N -0.286 5.286 16 C -0.130 4.130 17 C 0.166 3.834 18 N -0.606 5.606 19 C -0.351 4.351 20 H 0.056 0.944 21 C -0.078 4.078 22 N -0.946 5.946 23 Si 1.115 2.885 24 H -0.296 1.296 25 H -0.274 1.274 26 H -0.280 1.280 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.001 0.999 40 H 0.044 0.956 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.980 -8.863 26.768 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.057 3.943 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.089 0.911 7 N -0.339 5.339 8 C 0.391 3.609 9 O -0.441 6.441 10 C -0.160 4.160 11 N -0.234 5.234 12 C -0.086 4.086 13 N -0.096 5.096 14 C -0.065 4.065 15 N -0.128 5.128 16 C -0.170 4.170 17 C 0.040 3.960 18 N -0.330 5.330 19 C -0.480 4.480 20 H 0.074 0.926 21 C -0.274 4.274 22 N -0.588 5.588 23 Si 0.939 3.061 24 H -0.223 1.223 25 H -0.199 1.199 26 H -0.206 1.206 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.256 0.744 33 H 0.299 0.701 34 H 0.124 0.876 35 H 0.165 0.835 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.540 -9.426 24.443 26.588 hybrid contribution -0.585 0.035 1.412 1.529 sum 3.955 -9.391 25.855 27.791 Atomic orbital electron populations 1.22224 0.97923 1.00520 1.00874 1.20597 0.92308 0.95427 0.85965 0.91268 1.22068 1.02086 0.92442 0.99112 1.20838 0.98661 0.92189 0.82433 0.91086 1.45734 1.34892 1.25469 1.27759 1.16684 0.81914 0.80565 0.81691 1.90802 1.29501 1.66548 1.57250 1.23363 0.96892 0.95555 1.00233 1.71207 1.17933 1.28561 1.05747 1.27555 0.95024 0.85813 1.00225 1.47840 1.21460 1.22905 1.17361 1.22783 1.05703 0.83899 0.94072 1.74272 1.21479 1.15764 1.01273 1.22265 1.00575 0.98398 0.95773 1.20610 0.95689 0.84438 0.95305 1.44394 1.65005 1.02780 1.20812 1.20227 1.24827 1.13819 0.89156 0.92599 1.27211 1.02692 0.99678 0.97823 1.70887 1.06252 1.43618 1.38008 0.82861 0.73109 0.76399 0.73683 1.22251 1.19921 1.20614 0.94393 0.90366 0.95174 0.88764 0.90845 0.74429 0.70061 0.87565 0.83510 0.88649 0.93394 0.91877 0.98129 0.93751 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.02 9.02 71.98 0.65 -5.38 16 2 C 0.16 6.65 3.27 44.83 0.15 6.80 16 3 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 4 C -0.12 -3.86 4.99 30.53 0.15 -3.70 16 5 C 0.16 5.89 2.21 45.02 0.10 5.99 16 6 H 0.07 2.87 5.93 -2.39 -0.01 2.85 16 7 N -0.69 -21.70 5.07 -445.25 -2.26 -23.96 16 8 C 0.61 21.72 7.80 86.79 0.68 22.40 16 9 O -0.56 -24.73 16.75 -3.87 -0.06 -24.79 16 10 C 0.12 3.55 7.96 137.13 1.09 4.64 16 11 N -0.51 -11.58 11.09 -193.03 -2.14 -13.72 16 12 C 0.21 2.58 12.62 180.30 2.27 4.86 16 13 N -0.30 -4.49 3.72 -373.46 -1.39 -5.88 16 14 C 0.07 0.19 11.38 127.77 1.45 1.64 16 15 N -0.29 -7.85 12.08 -52.43 -0.63 -8.48 16 16 C -0.13 -5.47 5.65 30.67 0.17 -5.30 16 17 C 0.17 8.41 4.29 86.36 0.37 8.78 16 18 N -0.61 -30.64 2.54 -676.04 -1.72 -32.36 16 19 C -0.35 -19.69 9.48 84.04 0.80 -18.89 16 20 H 0.06 3.09 7.94 -2.91 -0.02 3.06 16 21 C -0.08 -4.51 4.69 84.87 0.40 -4.11 16 22 N -0.95 -59.51 12.45 21.65 0.27 -59.24 16 23 Si 1.11 51.91 29.98 68.60 2.06 53.96 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H 0.04 1.53 5.74 -2.39 -0.01 1.52 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.42 11.10 8.31 -92.71 -0.77 10.33 16 33 H 0.28 -0.34 8.06 -2.91 -0.02 -0.37 16 34 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.15 -0.92 8.14 -2.38 -0.02 -0.94 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.00 0.04 7.23 -2.39 -0.02 0.02 16 40 H 0.04 2.53 6.38 -2.38 -0.02 2.52 16 41 H 0.25 16.36 6.71 -92.71 -0.62 15.74 16 Total: -1.00 -84.74 335.88 2.83 -81.91 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.43 Total: 14.84 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 8.28 Total: 17.72 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -7.87 Total: -143.64 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.06 Total: -24.79 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.96 kcal Total: -84.74 2.83 -81.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947277086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.146 kcal (2) G-P(sol) polarization free energy of solvation -84.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds