Wall clock time and date at job start Fri Apr 10 2020 17:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48561 * 111.00444 * 2 1 4 4 C 1.54373 * 104.59694 * 200.96213 * 3 2 1 5 5 C 1.54258 * 105.06193 * 23.85238 * 4 3 2 6 6 C 1.48559 * 110.99651 * 244.58243 * 2 1 3 7 7 H 1.09001 * 110.51528 * 40.21377 * 6 2 1 8 8 C 1.50704 * 110.41406 * 277.81654 * 6 2 1 9 9 O 1.21288 * 119.99825 * 344.83532 * 8 6 2 10 10 N 1.34773 * 120.00289 * 164.82305 * 8 6 2 11 11 C 1.46494 * 120.00266 * 180.02562 * 10 8 6 12 12 H 1.09004 * 110.68450 * 37.04658 * 11 10 8 13 13 C 1.55480 * 110.61214 * 160.18523 * 11 10 8 14 14 C 1.55842 * 103.32716 * 118.41660 * 13 11 10 15 15 H 1.08999 * 116.12656 * 159.23678 * 14 13 11 16 16 C 1.56854 * 105.78149 * 288.56892 * 14 13 11 17 17 C 1.54856 * 103.35595 * 71.45217 * 16 14 13 18 18 C 1.55845 * 103.44398 * 0.28024 * 17 16 14 19 19 H 1.09001 * 115.56048 * 158.81501 * 18 17 16 20 20 N 1.50237 * 101.05187 * 33.02757 * 14 13 11 21 21 C 1.36939 * 130.83957 * 126.06288 * 20 14 13 22 22 H 1.08004 * 119.99888 * 189.84082 * 21 20 14 23 23 C 1.38812 * 119.99737 * 9.84292 * 21 20 14 24 24 N 1.31617 * 120.00158 * 9.16116 * 23 21 20 25 25 Si 1.86805 * 119.99640 * 189.16143 * 23 21 20 26 26 H 1.48496 * 109.46884 * 265.02078 * 25 23 21 27 27 H 1.48497 * 109.47049 * 145.01918 * 25 23 21 28 28 H 1.48501 * 109.46965 * 25.01952 * 25 23 21 29 29 H 1.08997 * 109.47111 * 175.42093 * 1 2 3 30 30 H 1.09001 * 109.46906 * 295.41849 * 1 2 3 31 31 H 1.08995 * 109.46938 * 55.41510 * 1 2 3 32 32 H 1.09001 * 110.40931 * 82.17742 * 3 2 1 33 33 H 1.08997 * 110.50943 * 319.79334 * 3 2 1 34 34 H 1.09001 * 110.32282 * 264.95559 * 4 3 2 35 35 H 1.09001 * 110.40852 * 142.79461 * 4 3 2 36 36 H 1.09001 * 110.32737 * 241.10446 * 5 4 3 37 37 H 1.08996 * 110.32854 * 118.89458 * 5 4 3 38 38 H 0.97003 * 119.99675 * 0.02562 * 10 8 6 39 39 H 1.09001 * 110.60866 * 0.02562 * 13 11 10 40 40 H 1.09002 * 110.89564 * 236.97240 * 13 11 10 41 41 H 1.09010 * 110.43432 * 313.10835 * 16 14 13 42 42 H 1.08994 * 110.91222 * 190.03040 * 16 14 13 43 43 H 1.09001 * 110.62385 * 241.78833 * 17 16 14 44 44 H 1.09003 * 110.62149 * 118.77100 * 17 16 14 45 45 H 0.97001 * 119.99711 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 6 2.0013 -0.5953 -1.2527 7 1 1.4104 -0.2729 -2.1100 8 6 2.0103 -2.0993 -1.1575 9 8 1.8828 -2.6395 -0.0791 10 7 2.1599 -2.8441 -2.2708 11 6 2.1681 -4.3061 -2.1783 12 1 1.4590 -4.6482 -1.4244 13 6 1.8528 -4.9438 -3.5608 14 6 3.1407 -5.7604 -3.8820 15 1 3.0315 -6.5609 -4.6137 16 6 4.2484 -4.6990 -4.2087 17 6 4.5541 -4.0648 -2.8295 18 6 3.6017 -4.8282 -1.8605 19 1 3.8868 -4.8089 -0.8086 20 7 3.5633 -6.1852 -2.5043 21 6 3.8355 -7.4264 -1.9940 22 1 3.9739 -7.5546 -0.9305 23 6 3.9337 -8.5198 -2.8435 24 7 3.9457 -8.3411 -4.1474 25 14 4.0489 -10.2448 -2.1360 26 1 5.4756 -10.6437 -2.0340 27 1 3.3320 -11.1935 -3.0255 28 1 3.4305 -10.2684 -0.7860 29 1 -0.3633 -1.0244 -0.0820 30 1 -0.3633 0.4411 0.9282 31 1 -0.3633 0.5833 -0.8460 32 1 2.0080 1.7916 1.0121 33 1 1.4105 2.0229 -0.6590 34 1 4.1484 1.1747 0.2934 35 1 3.6955 2.0993 -1.1695 36 1 4.1483 -0.7694 -0.9353 37 1 3.6936 0.1554 -2.3985 38 1 2.2621 -2.4121 -3.1332 39 1 1.6914 -4.1707 -4.3121 40 1 0.9865 -5.6023 -3.4968 41 1 3.8643 -3.9485 -4.8998 42 1 5.1382 -5.1783 -4.6167 43 1 4.3216 -2.9998 -2.8366 44 1 5.5956 -4.2297 -2.5535 45 1 4.0147 -9.1052 -4.7410 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095240831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:08 Heat of formation + Delta-G solvation = 0.939469 kcal Electronic energy + Delta-G solvation = -24880.433151 eV Core-core repulsion = 21512.299201 eV Total energy + Delta-G solvation = -3368.133950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56044 -40.35792 -38.59880 -35.40834 -34.19957 -33.10325 -31.16221 -30.94898 -30.29872 -28.79039 -26.61930 -26.10504 -23.73174 -22.67964 -21.84228 -21.58260 -20.86310 -20.11117 -18.91330 -18.30598 -17.09022 -16.86886 -16.70301 -16.34320 -15.86453 -15.70332 -15.20627 -15.18877 -14.69028 -14.42421 -14.11918 -13.86493 -13.46685 -13.30836 -13.24112 -12.93343 -12.84753 -12.77983 -12.60885 -12.53855 -12.36507 -12.29515 -12.00569 -11.97628 -11.90417 -11.59770 -11.49992 -11.26893 -10.90837 -10.81631 -10.61999 -9.94619 -9.40957 -8.82850 -7.84790 -5.19950 1.44982 1.45685 1.55342 1.73404 2.12767 2.49723 3.14337 3.30940 3.50916 3.65563 3.67028 3.91696 4.02285 4.09056 4.12930 4.18461 4.30072 4.42903 4.44098 4.47786 4.49467 4.60455 4.62365 4.70949 4.76099 4.80993 4.92967 4.97761 4.99400 5.04920 5.08247 5.13953 5.17272 5.24619 5.28589 5.34676 5.47540 5.58369 5.75663 5.82453 5.88002 6.03853 6.21677 6.74180 7.02771 7.43407 7.67179 8.56048 9.25563 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030282 B = 0.003808 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.406957 B = 7350.453093 C = 7590.908431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.525 5.525 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.112 4.112 6 C 0.049 3.951 7 H 0.101 0.899 8 C 0.514 3.486 9 O -0.573 6.573 10 N -0.699 5.699 11 C 0.151 3.849 12 H 0.050 0.950 13 C -0.124 4.124 14 C 0.144 3.856 15 H 0.107 0.893 16 C -0.119 4.119 17 C -0.114 4.114 18 C 0.117 3.883 19 H 0.057 0.943 20 N -0.618 5.618 21 C -0.230 4.230 22 H 0.065 0.935 23 C -0.058 4.058 24 N -0.939 5.939 25 Si 0.971 3.029 26 H -0.288 1.288 27 H -0.289 1.289 28 H -0.278 1.278 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.031 0.969 43 H 0.089 0.911 44 H 0.035 0.965 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 23.036 -0.688 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.094 4.094 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.063 4.063 7 H 0.118 0.882 8 C 0.301 3.699 9 O -0.451 6.451 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.068 0.932 13 C -0.164 4.164 14 C 0.038 3.962 15 H 0.125 0.875 16 C -0.159 4.159 17 C -0.154 4.154 18 C 0.009 3.991 19 H 0.076 0.924 20 N -0.341 5.341 21 C -0.359 4.359 22 H 0.083 0.917 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.800 3.200 26 H -0.215 1.215 27 H -0.215 1.215 28 H -0.203 1.203 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.251 0.749 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.054 0.946 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.485 22.036 0.556 22.495 hybrid contribution -0.067 -1.127 -0.324 1.175 sum -4.553 20.909 0.232 21.400 Atomic orbital electron populations 1.22473 0.87081 1.01235 1.02195 1.65007 1.09219 1.16629 1.34129 1.23218 0.95686 0.88269 1.02227 1.22306 0.96190 0.97324 0.99871 1.22303 0.92534 0.97451 1.02800 1.22684 0.99592 0.89873 0.94157 0.88186 1.20995 0.75232 0.90091 0.83579 1.90691 1.50055 1.74654 1.29684 1.45954 1.73374 1.05719 1.10190 1.22091 0.96721 0.79133 0.97650 0.93180 1.23200 0.98704 0.99313 0.95149 1.23580 0.90968 0.93770 0.87886 0.87521 1.23039 0.98814 0.97905 0.96104 1.22773 0.97693 0.99175 0.95723 1.23302 0.94984 0.85769 0.95016 0.92434 1.46727 1.77942 1.00333 1.09069 1.19241 1.40565 0.84375 0.91718 0.91672 1.25411 1.02926 1.01003 0.95802 1.69844 1.57548 1.29421 1.01937 0.85169 0.77289 0.80178 0.77324 1.21534 1.21483 1.20323 0.93593 0.90336 0.93245 0.89690 0.91672 0.91494 0.88234 0.92685 0.87375 0.74895 0.88131 0.92984 0.89365 0.95015 0.89287 0.94588 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.45 127.69 1.21 1.57 16 2 N -0.53 -11.68 4.92 -887.02 -4.36 -16.04 16 3 C 0.03 0.49 6.49 86.45 0.56 1.05 16 4 C -0.12 -1.57 7.00 31.49 0.22 -1.35 16 5 C -0.11 -1.83 6.54 31.49 0.21 -1.63 16 6 C 0.05 0.99 2.68 44.32 0.12 1.11 16 7 H 0.10 1.45 7.97 -2.39 -0.02 1.43 16 8 C 0.51 15.22 6.71 87.66 0.59 15.81 16 9 O -0.57 -23.46 16.30 -3.05 -0.05 -23.51 16 10 N -0.70 -18.76 3.67 -433.88 -1.59 -20.35 16 11 C 0.15 5.55 3.10 46.83 0.15 5.70 16 12 H 0.05 2.17 7.71 -2.38 -0.02 2.15 16 13 C -0.12 -4.40 6.25 32.43 0.20 -4.20 16 14 C 0.14 6.43 4.64 46.59 0.22 6.65 16 15 H 0.11 5.57 5.88 -2.39 -0.01 5.55 16 16 C -0.12 -4.44 6.50 32.58 0.21 -4.23 16 17 C -0.11 -4.11 6.34 32.21 0.20 -3.91 16 18 C 0.12 5.07 5.29 46.23 0.24 5.32 16 19 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 20 N -0.62 -31.96 2.96 -613.33 -1.81 -33.77 16 21 C -0.23 -13.34 10.55 84.03 0.89 -12.46 16 22 H 0.07 3.79 7.85 -2.91 -0.02 3.77 16 23 C -0.06 -3.31 5.47 84.86 0.46 -2.85 16 24 N -0.94 -55.04 10.74 21.65 0.23 -54.80 16 25 Si 0.97 46.77 29.56 68.60 2.03 48.80 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 29 H 0.05 1.12 7.96 -2.39 -0.02 1.11 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 0.72 7.98 -2.39 -0.02 0.70 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 0.70 7.91 -2.39 -0.02 0.68 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.19 7.85 -2.39 -0.02 1.17 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 38 H 0.41 7.81 8.06 -92.71 -0.75 7.07 16 39 H 0.10 2.64 7.41 -2.39 -0.02 2.62 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.09 2.47 7.88 -2.38 -0.02 2.45 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 2.48 6.56 -2.39 -0.02 2.47 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -74.29 349.08 0.15 -74.15 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.23 Total: 18.94 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.48 Total: 6.58 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -7.54 Total: -124.96 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -74.29 0.15 -74.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095240831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.088 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds