Wall clock time and date at job start Fri Apr 10 2020 17:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.91200 * 2 1 4 4 C 1.55123 * 111.16172 * 236.07160 * 2 1 3 5 5 N 1.47425 * 104.94155 * 205.12813 * 4 2 1 6 6 C 1.36936 * 125.65147 * 204.03823 * 5 4 2 7 7 H 1.07994 * 120.00459 * 179.97438 * 6 5 4 8 8 C 1.38816 * 119.99709 * 359.96460 * 6 5 4 9 9 N 1.31622 * 120.00078 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99983 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47213 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47319 * 119.99543 * 10 8 6 13 13 H 1.48504 * 109.46819 * 239.99960 * 10 8 6 14 14 C 1.47019 * 108.70229 * 24.00756 * 5 4 2 15 15 C 1.54329 * 107.27042 * 358.93746 * 14 5 4 16 16 H 1.09002 * 110.71904 * 96.35069 * 15 14 5 17 17 C 1.53007 * 110.71896 * 219.44359 * 15 14 5 18 18 N 1.46494 * 109.47194 * 291.15918 * 17 15 14 19 19 C 1.34780 * 120.00098 * 180.02562 * 18 17 15 20 20 O 1.21273 * 119.99743 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00004 * 179.97438 * 19 18 17 22 22 N 1.46505 * 109.46931 * 179.97438 * 21 19 18 23 23 C 1.34428 * 126.82137 * 125.02213 * 22 21 19 24 24 N 1.30829 * 108.07758 * 179.97438 * 23 22 21 25 25 C 1.33239 * 109.82920 * 0.02562 * 24 23 22 26 26 N 1.30714 * 108.94945 * 359.97438 * 25 24 23 27 27 H 1.08995 * 109.47255 * 296.09658 * 1 2 3 28 28 H 1.08997 * 109.46969 * 56.10147 * 1 2 3 29 29 H 1.09002 * 109.46731 * 176.09604 * 1 2 3 30 30 H 1.08999 * 110.41940 * 86.20446 * 4 2 1 31 31 H 1.08996 * 110.30633 * 323.99886 * 4 2 1 32 32 H 0.97000 * 119.99891 * 179.97438 * 9 8 6 33 33 H 1.08997 * 109.88334 * 239.52024 * 14 5 4 34 34 H 1.09005 * 109.88770 * 118.35540 * 14 5 4 35 35 H 1.08998 * 109.46739 * 171.15565 * 17 15 14 36 36 H 1.08995 * 109.47159 * 51.15571 * 17 15 14 37 37 H 0.97002 * 120.00345 * 359.97438 * 18 17 15 38 38 H 1.09005 * 109.46920 * 60.00018 * 21 19 18 39 39 H 1.08994 * 109.47333 * 299.99855 * 21 19 18 40 40 H 1.08003 * 125.95916 * 0.03061 * 23 22 21 41 41 H 1.07995 * 125.52955 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4680 -1.5728 -1.6022 7 1 5.4150 -1.8847 -1.1872 8 6 4.3030 -1.5019 -2.9787 9 7 3.1486 -1.1224 -3.4844 10 14 5.7188 -1.9464 -4.1132 11 1 6.8990 -2.3386 -3.3017 12 1 5.3178 -3.0802 -4.9844 13 1 6.0654 -0.7734 -4.9553 14 6 3.4672 -1.2781 0.6988 15 6 2.0861 -0.8079 1.2022 16 1 1.4451 -1.6614 1.4229 17 6 2.2350 0.0876 2.4338 18 7 2.7029 -0.7143 3.5670 19 6 2.9063 -0.1328 4.7657 20 8 2.7023 1.0544 4.9062 21 6 3.3872 -0.9578 5.9315 22 7 3.5298 -0.1003 7.1108 23 6 2.9608 -0.2848 8.3147 24 7 3.3347 0.6964 9.0951 25 6 4.1385 1.5234 8.4279 26 7 4.2882 1.0777 7.2082 27 1 -0.3633 0.4520 0.9228 28 1 -0.3633 0.5731 -0.8530 29 1 -0.3633 -1.0253 -0.0700 30 1 2.1643 -0.1733 -2.0837 31 1 1.4554 -1.6695 -1.4053 32 1 3.0335 -1.0725 -4.4463 33 1 4.2434 -0.6057 1.0641 34 1 3.6613 -2.2937 1.0437 35 1 1.2706 0.5332 2.6776 36 1 2.9572 0.8766 2.2242 37 1 2.8658 -1.6639 3.4548 38 1 4.3517 -1.4034 5.6880 39 1 2.6649 -1.7468 6.1408 40 1 2.3094 -1.1012 8.5899 41 1 4.5932 2.4168 8.8297 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102558953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:20 Heat of formation + Delta-G solvation = 58.239416 kcal Electronic energy + Delta-G solvation = -23079.515131 eV Core-core repulsion = 19610.325551 eV Total energy + Delta-G solvation = -3469.189581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.97345 -40.83281 -39.53498 -36.12100 -34.98369 -34.66307 -32.56470 -32.14585 -31.12170 -28.99306 -27.75748 -26.48466 -24.55178 -23.23205 -22.86396 -21.86942 -21.45303 -20.72907 -18.92853 -18.44624 -18.24828 -17.27711 -16.73408 -16.64107 -16.18092 -15.99360 -15.57588 -15.54605 -15.00237 -14.74990 -14.57552 -14.42311 -14.05621 -13.65605 -13.51507 -13.40191 -13.02020 -12.77925 -12.75445 -12.66719 -12.47290 -11.94779 -11.85443 -11.62821 -11.44179 -11.38945 -11.13217 -10.98415 -10.76287 -10.74787 -10.49380 -10.13293 -8.87785 -7.78042 -5.22068 0.71635 1.33850 1.45660 1.46610 1.52452 1.56547 2.04245 2.17614 2.48527 3.31581 3.51443 3.56239 3.64529 3.74784 3.80942 3.90808 3.97205 4.11178 4.19100 4.37809 4.43885 4.49957 4.61605 4.74594 4.80091 4.84891 4.97827 5.09533 5.16273 5.26679 5.34102 5.39020 5.41953 5.49524 5.50915 5.72016 5.84744 5.90886 6.31883 6.49965 7.11057 7.13926 7.19381 7.79212 8.42242 9.23639 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.026009 B = 0.002906 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.299599 B = 9632.307120 C =10345.707303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.060 0.940 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.236 4.236 7 H 0.080 0.920 8 C -0.069 4.069 9 N -0.948 5.948 10 Si 0.978 3.022 11 H -0.267 1.267 12 H -0.291 1.291 13 H -0.294 1.294 14 C 0.137 3.863 15 C -0.087 4.087 16 H 0.102 0.898 17 C 0.148 3.852 18 N -0.709 5.709 19 C 0.495 3.505 20 O -0.572 6.572 21 C 0.112 3.888 22 N -0.377 5.377 23 C 0.265 3.735 24 N -0.578 5.578 25 C 0.184 3.816 26 N -0.341 5.341 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.065 0.935 31 H -0.007 1.007 32 H 0.246 0.754 33 H 0.017 0.983 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.419 0.581 38 H 0.141 0.859 39 H 0.189 0.811 40 H 0.271 0.729 41 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -4.013 21.206 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.037 3.963 5 N -0.356 5.356 6 C -0.365 4.365 7 H 0.098 0.902 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.191 1.191 12 H -0.218 1.218 13 H -0.221 1.221 14 C 0.012 3.988 15 C -0.106 4.106 16 H 0.121 0.879 17 C 0.023 3.977 18 N -0.362 5.362 19 C 0.280 3.720 20 O -0.451 6.451 21 C -0.013 4.013 22 N -0.169 5.169 23 C -0.031 4.031 24 N -0.306 5.306 25 C -0.119 4.119 26 N -0.168 5.168 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.011 0.989 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.257 0.743 38 H 0.159 0.841 39 H 0.206 0.794 40 H 0.286 0.714 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.028 -2.851 20.822 21.399 hybrid contribution 0.801 -0.466 -1.395 1.675 sum -3.228 -3.316 19.427 19.970 Atomic orbital electron populations 1.21593 0.92692 1.02083 1.02055 1.22471 0.96768 0.98203 0.94872 0.92157 1.21782 0.83822 0.94935 0.95771 1.44816 1.10573 1.78884 1.01300 1.19476 0.92023 1.37000 0.88044 0.90194 1.25619 0.99685 1.02619 0.98173 1.70069 1.24179 1.54965 1.10632 0.85014 0.78769 0.76877 0.78708 1.19093 1.21810 1.22125 1.21531 0.95529 0.97855 0.83878 1.22329 0.96490 0.98595 0.93177 0.87949 1.21117 0.99315 0.93091 0.84148 1.45813 1.67684 1.13788 1.08962 1.21158 0.77523 0.88326 0.84985 1.90791 1.52164 1.17705 1.84390 1.21994 1.07863 0.90976 0.80463 1.50151 1.36045 1.19064 1.11594 1.27068 0.96088 0.99099 0.80797 1.70524 1.18738 1.06388 1.34902 1.26463 0.96769 1.00817 0.87874 1.78138 1.18345 0.99214 1.21098 0.90857 0.92982 0.92359 0.91683 0.98906 0.94410 0.96524 0.94663 0.90858 0.93855 0.74312 0.84107 0.79350 0.71409 0.75107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.32 71.98 0.67 -2.82 16 2 C -0.10 -3.58 3.10 -9.33 -0.03 -3.61 16 3 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 4 C 0.16 7.72 5.37 86.93 0.47 8.18 16 5 N -0.63 -31.47 3.40 -691.56 -2.35 -33.82 16 6 C -0.24 -13.06 10.27 84.03 0.86 -12.19 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 8 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 9 N -0.95 -56.21 10.09 21.65 0.22 -55.99 16 10 Si 0.98 45.38 29.55 68.60 2.03 47.40 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 C 0.14 5.11 6.64 86.73 0.58 5.68 16 15 C -0.09 -2.50 2.45 -9.60 -0.02 -2.52 16 16 H 0.10 2.51 8.04 -2.39 -0.02 2.49 16 17 C 0.15 3.76 5.00 86.38 0.43 4.19 16 18 N -0.71 -13.12 5.43 -463.07 -2.51 -15.63 16 19 C 0.49 10.38 7.87 87.66 0.69 11.07 16 20 O -0.57 -18.90 15.74 -3.01 -0.05 -18.95 16 21 C 0.11 1.17 7.03 85.63 0.60 1.77 16 22 N -0.38 -6.87 3.41 -355.80 -1.21 -8.08 16 23 C 0.27 3.76 12.63 180.36 2.28 6.03 16 24 N -0.58 -12.20 11.19 -204.01 -2.28 -14.48 16 25 C 0.18 4.18 13.03 180.77 2.36 6.54 16 26 N -0.34 -9.05 11.82 -61.25 -0.72 -9.77 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.07 3.64 5.87 -2.39 -0.01 3.63 16 31 H -0.01 -0.36 7.99 -2.39 -0.02 -0.37 16 32 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.02 0.65 7.73 -2.39 -0.02 0.63 16 34 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.36 8.00 -2.39 -0.02 1.34 16 37 H 0.42 4.94 8.40 -92.71 -0.78 4.17 16 38 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.19 -0.28 8.09 -2.39 -0.02 -0.29 16 40 H 0.27 0.40 8.06 -2.91 -0.02 0.38 16 41 H 0.23 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -85.72 343.34 2.72 -83.00 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.26 Total: 7.40 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 9.35 Total: 18.93 kcal Atomic # 7 Polarization: -128.92 SS G_CDS: -8.86 Total: -137.78 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -85.72 2.72 -83.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102558953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.236 kcal (2) G-P(sol) polarization free energy of solvation -85.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds