Wall clock time and date at job start Fri Apr 10 2020 17:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.91676 * 2 1 4 4 C 1.54908 * 111.00014 * 236.09867 * 2 1 3 5 5 N 1.47431 * 104.82945 * 204.91982 * 4 2 1 6 6 C 1.34784 * 125.64677 * 204.16876 * 5 4 2 7 7 O 1.21617 * 119.99720 * 355.16167 * 6 5 4 8 8 C 1.47228 * 119.99853 * 175.16425 * 6 5 4 9 9 C 1.36998 * 127.18971 * 185.22493 * 8 6 5 10 10 N 1.33326 * 106.37602 * 179.90527 * 9 8 6 11 11 N 1.28510 * 109.43565 * 0.37094 * 10 9 8 12 12 N 1.28715 * 110.64037 * 359.76243 * 11 10 9 13 13 H 0.96999 * 126.03783 * 179.97438 * 12 11 10 14 14 C 1.47015 * 108.70416 * 24.12682 * 5 4 2 15 15 C 1.54327 * 107.27058 * 358.94400 * 14 5 4 16 16 H 1.09000 * 110.72123 * 96.34662 * 15 14 5 17 17 C 1.53005 * 110.71986 * 219.43799 * 15 14 5 18 18 C 1.52999 * 109.47472 * 293.54780 * 17 15 14 19 19 N 1.46494 * 109.46954 * 179.97438 * 18 17 15 20 20 C 1.36937 * 119.99705 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99937 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00096 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46923 * 270.00256 * 24 22 20 26 26 H 1.48496 * 109.46966 * 149.99606 * 24 22 20 27 27 H 1.48499 * 109.46621 * 29.99778 * 24 22 20 28 28 H 1.09000 * 109.47254 * 296.09653 * 1 2 3 29 29 H 1.09000 * 109.47115 * 56.09292 * 1 2 3 30 30 H 1.08994 * 109.47647 * 176.09623 * 1 2 3 31 31 H 1.09001 * 110.36760 * 86.08762 * 4 2 1 32 32 H 1.09000 * 110.46527 * 323.80398 * 4 2 1 33 33 H 1.08003 * 126.81536 * 0.02562 * 9 8 6 34 34 H 1.08999 * 109.88884 * 239.52656 * 14 5 4 35 35 H 1.09000 * 109.88499 * 118.35838 * 14 5 4 36 36 H 1.09000 * 109.47141 * 173.54519 * 17 15 14 37 37 H 1.09007 * 109.46705 * 53.54732 * 17 15 14 38 38 H 1.09006 * 109.46846 * 59.99989 * 18 17 15 39 39 H 1.08998 * 109.47099 * 299.99984 * 18 17 15 40 40 H 0.96998 * 120.00239 * 0.02562 * 19 18 17 41 41 H 0.96993 * 119.99939 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4481 -1.5604 -1.5941 7 8 4.2761 -1.5828 -2.7978 8 6 5.7714 -1.8798 -1.0333 9 6 6.9278 -2.1228 -1.7265 10 7 7.8695 -2.3636 -0.8139 11 7 7.3551 -2.2888 0.3613 12 7 6.1023 -2.0021 0.2909 13 1 5.4989 -1.8924 1.0424 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4477 -1.6633 1.4238 17 6 2.2349 0.0875 2.4339 18 6 2.7848 -0.7364 3.6000 19 7 2.9278 0.1212 4.7790 20 6 3.4053 -0.4009 5.9515 21 1 3.6768 -1.4448 6.0068 22 6 3.5403 0.4115 7.0689 23 7 3.2099 1.6838 7.0013 24 14 4.1924 -0.3005 8.6681 25 1 3.0591 -0.8087 9.4820 26 1 4.9101 0.7569 9.4244 27 1 5.1262 -1.4156 8.3690 28 1 -0.3634 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3634 -1.0252 -0.0700 31 1 2.1560 -0.1719 -2.0837 32 1 1.4524 -1.6704 -1.4044 33 1 7.0524 -2.1180 -2.7993 34 1 4.2425 -0.5999 1.0600 35 1 3.6649 -2.2895 1.0400 36 1 1.2618 0.4968 2.7052 37 1 2.9224 0.9030 2.2091 38 1 3.7579 -1.1457 3.3286 39 1 2.0974 -1.5519 3.8246 40 1 2.6836 1.0586 4.7294 41 1 2.8717 2.0536 6.1709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104379891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:23 Heat of formation + Delta-G solvation = 70.804750 kcal Electronic energy + Delta-G solvation = -23514.805126 eV Core-core repulsion = 20046.160419 eV Total energy + Delta-G solvation = -3468.644707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.64772 -40.54753 -38.44363 -35.54253 -34.33690 -33.35231 -32.48428 -31.55274 -30.25356 -27.44968 -27.11368 -24.87654 -23.74338 -23.09587 -22.65005 -21.31093 -20.76078 -20.49062 -18.48101 -17.46702 -17.05823 -16.92659 -16.58403 -15.83352 -15.03597 -14.87359 -14.79250 -14.56575 -13.92483 -13.79615 -13.70562 -13.44577 -13.07338 -12.92741 -12.66223 -12.41553 -12.02349 -11.82770 -11.58052 -11.44689 -11.08320 -10.99406 -10.93816 -10.71140 -10.63931 -10.56514 -10.53333 -10.06594 -9.85367 -9.25987 -9.18325 -8.98464 -7.12509 -6.19879 -3.21083 0.58034 2.01353 2.09013 2.43556 2.68434 3.46802 3.51172 3.65316 3.74192 4.02819 4.08046 4.30917 4.37346 4.61591 4.64310 4.67555 4.85466 4.91233 4.92318 5.09441 5.21412 5.25817 5.28899 5.39249 5.49546 5.54534 5.60760 5.69700 5.72301 5.78151 5.81308 5.96096 6.00462 6.06712 6.28241 6.49545 6.56753 6.86792 7.50409 7.70764 7.99337 8.66430 9.12029 9.98417 10.11984 11.28579 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004084 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.350733 B = 6854.108146 C = 8686.220596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.090 0.910 4 C 0.113 3.887 5 N -0.614 5.614 6 C 0.612 3.388 7 O -0.517 6.517 8 C -0.068 4.068 9 C 0.033 3.967 10 N -0.272 5.272 11 N -0.041 5.041 12 N -0.374 5.374 13 H 0.453 0.547 14 C 0.082 3.918 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.120 4.120 18 C 0.157 3.843 19 N -0.744 5.744 20 C -0.337 4.337 21 H 0.065 0.935 22 C -0.042 4.042 23 N -0.942 5.942 24 Si 1.082 2.918 25 H -0.294 1.294 26 H -0.287 1.287 27 H -0.294 1.294 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.205 0.795 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.013 0.987 39 H 0.021 0.979 40 H 0.367 0.633 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.063 -5.699 -18.218 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.009 4.009 5 N -0.348 5.348 6 C 0.398 3.602 7 O -0.391 6.391 8 C -0.203 4.203 9 C -0.127 4.127 10 N -0.137 5.137 11 N -0.023 5.023 12 N -0.106 5.106 13 H 0.305 0.695 14 C -0.041 4.041 15 C -0.103 4.103 16 H 0.112 0.888 17 C -0.158 4.158 18 C 0.030 3.970 19 N -0.390 5.390 20 C -0.468 4.468 21 H 0.083 0.917 22 C -0.240 4.240 23 N -0.587 5.587 24 Si 0.912 3.088 25 H -0.222 1.222 26 H -0.213 1.213 27 H -0.221 1.221 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.221 0.779 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.200 0.800 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.375 -5.939 -16.498 17.589 hybrid contribution -1.683 0.141 -1.664 2.371 sum -3.058 -5.798 -18.163 19.309 Atomic orbital electron populations 1.21692 0.93066 1.02391 1.02674 1.22476 0.96829 0.99566 0.93203 0.89213 1.22428 0.81555 0.98728 0.98156 1.48384 1.12766 1.66658 1.06972 1.16345 0.80910 0.77387 0.85507 1.90866 1.82388 1.52661 1.13180 1.22277 0.98264 1.15137 0.84589 1.23913 0.87043 0.99985 1.01744 1.75028 1.26578 1.17430 0.94628 1.78286 0.90768 1.14525 1.18727 1.46316 1.10082 1.45689 1.08479 0.69512 1.22532 1.00792 1.01363 0.79459 1.22239 0.93693 0.99326 0.95012 0.88768 1.21818 1.02422 0.98114 0.93493 1.20606 0.96651 0.93297 0.86476 1.42361 1.79680 1.08783 1.08185 1.20042 1.40440 0.96093 0.90209 0.91710 1.25799 1.00996 0.95474 1.01750 1.70865 1.46564 1.12633 1.28669 0.83211 0.75988 0.74497 0.75075 1.22213 1.21270 1.22061 0.91444 0.92151 0.92183 0.89848 0.90625 0.77859 0.90647 0.90822 0.90784 0.91606 0.96932 0.96102 0.79982 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.31 37.16 0.35 -0.62 16 2 C -0.10 -0.81 3.09 -88.47 -0.27 -1.08 16 3 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 4 C 0.11 0.96 6.36 -2.53 -0.02 0.95 16 5 N -0.61 -6.08 3.33 -171.86 -0.57 -6.65 16 6 C 0.61 7.16 7.83 -12.60 -0.10 7.06 16 7 O -0.52 -7.26 17.22 5.26 0.09 -7.17 16 8 C -0.07 -0.77 6.97 -82.34 -0.57 -1.35 16 9 C 0.03 0.37 11.87 -17.35 -0.21 0.17 16 10 N -0.27 -3.64 12.35 30.47 0.38 -3.27 16 11 N -0.04 -0.55 13.35 60.35 0.81 0.26 16 12 N -0.37 -4.17 6.59 33.31 0.22 -3.95 16 13 H 0.45 4.26 5.19 -190.33 -0.99 3.28 16 14 C 0.08 0.75 3.89 -3.07 -0.01 0.74 16 15 C -0.08 -0.77 2.45 -88.78 -0.22 -0.99 16 16 H 0.09 0.83 8.04 -51.93 -0.42 0.41 16 17 C -0.12 -1.52 4.71 -26.73 -0.13 -1.65 16 18 C 0.16 2.74 6.11 -4.05 -0.02 2.72 16 19 N -0.74 -17.65 5.60 -59.91 -0.34 -17.99 16 20 C -0.34 -9.20 9.99 -15.06 -0.15 -9.35 16 21 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 23 N -0.94 -28.47 13.70 55.49 0.76 -27.71 16 24 Si 1.08 25.39 29.92 -169.99 -5.09 20.31 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 31 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.08 0.59 7.99 -51.93 -0.41 0.18 16 33 H 0.20 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.08 0.72 6.65 -51.93 -0.35 0.38 16 35 H 0.07 0.60 7.38 -51.93 -0.38 0.22 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 38 H 0.01 0.22 7.49 -51.93 -0.39 -0.17 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.37 8.91 6.50 -40.82 -0.27 8.64 16 41 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -33.67 338.19 -6.57 -40.24 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.48 Total: 5.55 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.45 Total: -4.71 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 1.25 Total: -59.31 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: 0.09 Total: -7.17 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.09 Total: 20.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.67 -6.57 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104379891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.044 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds