Wall clock time and date at job start Fri Apr 10 2020 17:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.91676 * 2 1 4 4 C 1.54908 * 111.00014 * 236.09867 * 2 1 3 5 5 N 1.47431 * 104.82945 * 204.91982 * 4 2 1 6 6 C 1.34784 * 125.64677 * 204.16876 * 5 4 2 7 7 O 1.21617 * 119.99720 * 355.16167 * 6 5 4 8 8 C 1.47228 * 119.99853 * 175.16425 * 6 5 4 9 9 C 1.36998 * 127.18971 * 185.22493 * 8 6 5 10 10 N 1.33326 * 106.37602 * 179.90527 * 9 8 6 11 11 N 1.28510 * 109.43565 * 0.37094 * 10 9 8 12 12 N 1.28715 * 110.64037 * 359.76243 * 11 10 9 13 13 H 0.96999 * 126.03783 * 179.97438 * 12 11 10 14 14 C 1.47015 * 108.70416 * 24.12682 * 5 4 2 15 15 C 1.54327 * 107.27058 * 358.94400 * 14 5 4 16 16 H 1.09000 * 110.72123 * 96.34662 * 15 14 5 17 17 C 1.53005 * 110.71986 * 219.43799 * 15 14 5 18 18 C 1.52999 * 109.47472 * 293.54780 * 17 15 14 19 19 N 1.46494 * 109.46954 * 179.97438 * 18 17 15 20 20 C 1.36937 * 119.99705 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00102 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99937 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00044 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00096 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46923 * 270.00256 * 24 22 20 26 26 H 1.48496 * 109.46966 * 149.99606 * 24 22 20 27 27 H 1.48499 * 109.46621 * 29.99778 * 24 22 20 28 28 H 1.09000 * 109.47254 * 296.09653 * 1 2 3 29 29 H 1.09000 * 109.47115 * 56.09292 * 1 2 3 30 30 H 1.08994 * 109.47647 * 176.09623 * 1 2 3 31 31 H 1.09001 * 110.36760 * 86.08762 * 4 2 1 32 32 H 1.09000 * 110.46527 * 323.80398 * 4 2 1 33 33 H 1.08003 * 126.81536 * 0.02562 * 9 8 6 34 34 H 1.08999 * 109.88884 * 239.52656 * 14 5 4 35 35 H 1.09000 * 109.88499 * 118.35838 * 14 5 4 36 36 H 1.09000 * 109.47141 * 173.54519 * 17 15 14 37 37 H 1.09007 * 109.46705 * 53.54732 * 17 15 14 38 38 H 1.09006 * 109.46846 * 59.99989 * 18 17 15 39 39 H 1.08998 * 109.47099 * 299.99984 * 18 17 15 40 40 H 0.96998 * 120.00239 * 0.02562 * 19 18 17 41 41 H 0.96993 * 119.99939 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4481 -1.5604 -1.5941 7 8 4.2761 -1.5828 -2.7978 8 6 5.7714 -1.8798 -1.0333 9 6 6.9278 -2.1228 -1.7265 10 7 7.8695 -2.3636 -0.8139 11 7 7.3551 -2.2888 0.3613 12 7 6.1023 -2.0021 0.2909 13 1 5.4989 -1.8924 1.0424 14 6 3.4674 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2022 16 1 1.4477 -1.6633 1.4238 17 6 2.2349 0.0875 2.4339 18 6 2.7848 -0.7364 3.6000 19 7 2.9278 0.1212 4.7790 20 6 3.4053 -0.4009 5.9515 21 1 3.6768 -1.4448 6.0068 22 6 3.5403 0.4115 7.0689 23 7 3.2099 1.6838 7.0013 24 14 4.1924 -0.3005 8.6681 25 1 3.0591 -0.8087 9.4820 26 1 4.9101 0.7569 9.4244 27 1 5.1262 -1.4156 8.3690 28 1 -0.3634 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3634 -1.0252 -0.0700 31 1 2.1560 -0.1719 -2.0837 32 1 1.4524 -1.6704 -1.4044 33 1 7.0524 -2.1180 -2.7993 34 1 4.2425 -0.5999 1.0600 35 1 3.6649 -2.2895 1.0400 36 1 1.2618 0.4968 2.7052 37 1 2.9224 0.9030 2.2091 38 1 3.7579 -1.1457 3.3286 39 1 2.0974 -1.5519 3.8246 40 1 2.6836 1.0586 4.7294 41 1 2.8717 2.0536 6.1709 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104379891.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:22 Heat of formation + Delta-G solvation = 46.871220 kcal Electronic energy + Delta-G solvation = -23515.842962 eV Core-core repulsion = 20046.160419 eV Total energy + Delta-G solvation = -3469.682543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.57809 -41.38808 -39.36307 -37.15664 -35.30535 -34.54537 -33.63615 -32.48410 -31.69019 -28.62306 -27.88922 -26.09155 -25.17158 -24.06076 -23.96708 -22.27069 -21.75855 -21.26504 -19.40281 -19.31672 -18.04056 -17.78414 -17.48730 -16.76290 -16.66518 -15.96134 -15.86810 -15.54867 -15.46039 -15.07964 -14.75766 -14.50795 -14.02839 -13.74017 -13.53235 -13.36236 -12.92392 -12.82767 -12.76515 -12.57526 -12.46849 -12.30039 -11.98473 -11.90992 -11.79866 -11.77029 -11.53690 -11.51381 -11.14058 -10.92788 -10.79130 -9.98962 -9.11553 -8.40347 -5.34865 -0.33371 1.06792 1.22334 1.58818 1.60591 1.68514 1.78821 1.82504 2.70158 2.89634 3.24210 3.26727 3.39593 3.48025 3.56771 3.77834 3.95132 3.95717 3.99487 4.15282 4.17993 4.28787 4.40691 4.53689 4.60678 4.67130 4.69824 4.77639 4.80931 4.86892 4.98829 5.06375 5.19207 5.24007 5.33043 5.42382 5.45135 5.58640 6.02017 6.49840 6.61903 7.04894 7.09502 8.00166 8.09243 9.12014 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004084 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.350733 B = 6854.108146 C = 8686.220596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.086 0.914 4 C 0.111 3.889 5 N -0.609 5.609 6 C 0.614 3.386 7 O -0.543 6.543 8 C -0.067 4.067 9 C 0.034 3.966 10 N -0.292 5.292 11 N -0.065 5.065 12 N -0.362 5.362 13 H 0.459 0.541 14 C 0.077 3.923 15 C -0.074 4.074 16 H 0.107 0.893 17 C -0.105 4.105 18 C 0.151 3.849 19 N -0.761 5.761 20 C -0.335 4.335 21 H 0.067 0.933 22 C -0.103 4.103 23 N -0.976 5.976 24 Si 1.126 2.874 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.273 1.273 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.228 0.772 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.361 0.639 41 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 -6.771 -18.998 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.104 0.896 4 C -0.010 4.010 5 N -0.341 5.341 6 C 0.401 3.599 7 O -0.419 6.419 8 C -0.202 4.202 9 C -0.126 4.126 10 N -0.156 5.156 11 N -0.047 5.047 12 N -0.095 5.095 13 H 0.312 0.688 14 C -0.046 4.046 15 C -0.094 4.094 16 H 0.125 0.875 17 C -0.143 4.143 18 C 0.025 3.975 19 N -0.405 5.405 20 C -0.466 4.466 21 H 0.085 0.915 22 C -0.294 4.294 23 N -0.625 5.625 24 Si 0.951 3.049 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.198 1.198 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.192 0.808 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.048 -7.044 -17.295 18.786 hybrid contribution -1.529 0.452 -1.492 2.184 sum -3.577 -6.593 -18.787 20.229 Atomic orbital electron populations 1.21686 0.91919 1.03154 1.02837 1.22407 0.97643 0.98997 0.92054 0.89609 1.22567 0.80884 0.99295 0.98236 1.48399 1.12937 1.65660 1.07124 1.16307 0.81113 0.77271 0.85239 1.90856 1.82767 1.54113 1.14165 1.22330 0.98342 1.14996 0.84556 1.24359 0.86561 0.99063 1.02658 1.75005 1.27441 1.18190 0.94997 1.78251 0.91615 1.15715 1.19070 1.46292 1.09638 1.44871 1.08745 0.68774 1.22611 1.00678 1.02209 0.79063 1.22140 0.94111 0.99252 0.93879 0.87513 1.21630 1.01778 0.97832 0.93056 1.20868 0.97379 0.93228 0.86005 1.42630 1.79505 1.09233 1.09174 1.20408 1.38676 0.96142 0.91409 0.91458 1.27119 1.01777 0.95346 1.05156 1.70969 1.49089 1.13934 1.28463 0.82640 0.76060 0.74273 0.71929 1.21097 1.22131 1.19836 0.92078 0.91098 0.91278 0.89892 0.89322 0.75601 0.90972 0.89388 0.90964 0.92066 0.95850 0.95926 0.80765 0.94412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.31 71.98 0.67 -0.86 16 2 C -0.09 -1.24 3.09 -9.40 -0.03 -1.27 16 3 H 0.09 1.27 8.05 -2.39 -0.02 1.25 16 4 C 0.11 1.62 6.36 86.85 0.55 2.17 16 5 N -0.61 -10.76 3.33 -815.88 -2.71 -13.48 16 6 C 0.61 13.36 7.83 86.60 0.68 14.04 16 7 O -0.54 -14.47 17.22 -4.09 -0.07 -14.54 16 8 C -0.07 -1.44 6.97 40.40 0.28 -1.15 16 9 C 0.03 0.72 11.87 84.17 1.00 1.72 16 10 N -0.29 -7.63 12.35 -57.50 -0.71 -8.34 16 11 N -0.06 -1.69 13.35 37.02 0.49 -1.20 16 12 N -0.36 -7.67 6.59 -48.53 -0.32 -7.99 16 13 H 0.46 8.00 5.19 -219.90 -1.14 6.86 16 14 C 0.08 1.24 3.89 86.73 0.34 1.58 16 15 C -0.07 -1.20 2.45 -9.60 -0.02 -1.22 16 16 H 0.11 1.53 8.04 -2.39 -0.02 1.51 16 17 C -0.10 -2.49 4.71 30.60 0.14 -2.34 16 18 C 0.15 5.06 6.11 86.38 0.53 5.59 16 19 N -0.76 -35.83 5.60 -343.46 -1.92 -37.75 16 20 C -0.33 -18.11 9.99 84.03 0.84 -17.27 16 21 H 0.07 3.54 7.83 -2.91 -0.02 3.51 16 22 C -0.10 -5.80 5.50 84.86 0.47 -5.33 16 23 N -0.98 -59.71 13.70 21.65 0.30 -59.42 16 24 Si 1.13 50.76 29.92 68.60 2.05 52.82 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.07 -2.39 -0.02 0.64 16 31 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 32 H 0.09 1.11 7.99 -2.39 -0.02 1.09 16 33 H 0.23 3.51 8.06 -2.91 -0.02 3.49 16 34 H 0.07 1.25 6.65 -2.39 -0.02 1.23 16 35 H 0.09 1.20 7.38 -2.39 -0.02 1.18 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.53 8.06 -2.38 -0.02 1.51 16 38 H 0.02 0.75 7.49 -2.38 -0.02 0.73 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.36 17.68 6.50 -92.71 -0.60 17.08 16 41 H 0.25 14.83 6.77 -92.71 -0.63 14.20 16 Total: -1.00 -71.73 338.19 2.01 -69.73 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.54 Total: 24.52 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.44 Total: -4.35 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -4.88 Total: -128.17 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.07 Total: -14.54 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.05 Total: 52.82 kcal Total: -71.73 2.01 -69.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104379891.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.597 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds