Wall clock time and date at job start Fri Apr 10 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.28799 * 2 1 4 4 C 1.54008 * 110.32967 * 237.86992 * 2 1 3 5 5 N 1.47484 * 107.08193 * 242.41189 * 4 2 1 6 6 C 1.34775 * 127.03259 * 154.51899 * 5 4 2 7 7 O 1.21618 * 120.00301 * 185.56433 * 6 5 4 8 8 C 1.47237 * 119.99948 * 5.83691 * 6 5 4 9 9 C 1.37003 * 127.18694 * 5.99619 * 8 6 5 10 10 N 1.33325 * 106.36967 * 179.97438 * 9 8 6 11 11 N 1.28510 * 109.43876 * 0.02562 * 10 9 8 12 12 N 1.28711 * 110.63966 * 359.70844 * 11 10 9 13 13 C 1.46497 * 126.03867 * 180.31349 * 12 11 10 14 14 C 1.48118 * 105.93351 * 334.77317 * 5 4 2 15 15 C 1.54598 * 103.42046 * 39.02934 * 14 5 4 16 16 H 1.08997 * 110.57998 * 81.16785 * 15 14 5 17 17 C 1.53001 * 110.98838 * 204.37460 * 15 14 5 18 18 N 1.46506 * 109.46744 * 288.64869 * 17 15 14 19 19 C 1.36935 * 119.99742 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00426 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99700 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00063 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99636 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46836 * 90.00490 * 23 21 19 25 25 H 1.48504 * 109.46730 * 209.99846 * 23 21 19 26 26 H 1.48493 * 109.47317 * 330.00310 * 23 21 19 27 27 H 1.09003 * 109.47056 * 180.67994 * 1 2 3 28 28 H 1.08998 * 109.47365 * 300.67687 * 1 2 3 29 29 H 1.08997 * 109.47892 * 60.68423 * 1 2 3 30 30 H 1.08996 * 109.90918 * 123.04636 * 4 2 1 31 31 H 1.09001 * 110.06842 * 1.86394 * 4 2 1 32 32 H 1.07995 * 126.82007 * 0.02562 * 9 8 6 33 33 H 1.09008 * 109.47302 * 264.61875 * 13 12 11 34 34 H 1.09001 * 109.46896 * 24.61936 * 13 12 11 35 35 H 1.08997 * 109.47130 * 144.62183 * 13 12 11 36 36 H 1.08997 * 110.65874 * 157.50761 * 14 5 4 37 37 H 1.08993 * 110.66507 * 280.62981 * 14 5 4 38 38 H 1.08993 * 109.47571 * 48.64507 * 17 15 14 39 39 H 1.09004 * 109.47420 * 168.65352 * 17 15 14 40 40 H 0.97001 * 119.99989 * 0.02562 * 18 17 15 41 41 H 0.97009 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8277 -1.9216 -0.7104 6 6 3.0615 -3.0871 -1.3455 7 8 3.6233 -3.9950 -0.7632 8 6 2.6421 -3.2591 -2.7464 9 6 2.1113 -2.3057 -3.5749 10 7 1.8849 -2.9070 -4.7431 11 7 2.2405 -4.1395 -4.6658 12 7 2.7063 -4.4047 -3.4956 13 6 3.2131 -5.7028 -3.0435 14 6 3.2790 -1.5396 0.6477 15 6 2.0671 -0.7736 1.2262 16 1 1.3175 -1.4700 1.6020 17 6 2.5053 0.1938 2.3276 18 7 2.8962 -0.5660 3.5177 19 6 3.3278 0.0917 4.6386 20 1 3.3796 1.1704 4.6455 21 6 3.6976 -0.6282 5.7665 22 7 3.6340 -1.9428 5.7582 23 14 4.2871 0.2689 7.2953 24 1 3.1263 0.5684 8.1718 25 1 5.2538 -0.5866 8.0293 26 1 4.9494 1.5378 6.9002 27 1 -0.3633 -1.0276 0.0122 28 1 -0.3634 0.5243 0.8838 29 1 -0.3635 0.5031 -0.8960 30 1 2.7180 -0.1224 -1.8102 31 1 1.2354 -1.1155 -1.8388 32 1 1.9160 -1.2721 -3.3306 33 1 2.4188 -6.2438 -2.5290 34 1 3.5486 -6.2816 -3.9041 35 1 4.0488 -5.5489 -2.3609 36 1 3.4936 -2.4257 1.2450 37 1 4.1523 -0.8897 0.5942 38 1 3.3532 0.7827 1.9779 39 1 1.6788 0.8593 2.5768 40 1 2.8500 -1.5349 3.5114 41 1 3.8921 -2.4459 6.5465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106073497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:27 Heat of formation + Delta-G solvation = 86.212153 kcal Electronic energy + Delta-G solvation = -23629.531106 eV Core-core repulsion = 20161.554514 eV Total energy + Delta-G solvation = -3467.976592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.54942 -40.16455 -38.06904 -35.08735 -34.62503 -33.12206 -31.84816 -31.32321 -29.11312 -28.33948 -26.78274 -25.79532 -24.01178 -23.03150 -22.38080 -21.27808 -20.05445 -19.94407 -17.71573 -17.14645 -17.12776 -16.89507 -16.07935 -15.69163 -14.83851 -14.68268 -14.37910 -14.15736 -13.67787 -13.59580 -13.36697 -13.24039 -13.11772 -13.00505 -12.47030 -12.36898 -12.09586 -11.98010 -11.41213 -11.31089 -11.16068 -10.89692 -10.64609 -10.55937 -10.48060 -10.44891 -10.22545 -10.04441 -9.74549 -9.70476 -8.92472 -8.82980 -6.96660 -5.79021 -3.08648 0.69519 1.80295 2.05458 2.76492 2.87160 3.41972 3.47078 3.48989 3.95433 4.14181 4.40608 4.47936 4.52761 4.62936 4.74615 4.76638 4.79193 5.10703 5.15893 5.26186 5.33982 5.41983 5.44977 5.54316 5.62700 5.67912 5.69854 5.87843 5.93349 6.00790 6.07625 6.09872 6.13144 6.31544 6.36102 6.65004 6.76643 7.27853 7.67071 7.78992 8.08553 8.39016 9.50512 10.06917 10.41014 11.43510 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003409 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.643428 B = 8212.546018 C = 9078.892162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.089 3.911 5 N -0.603 5.603 6 C 0.609 3.391 7 O -0.533 6.533 8 C -0.061 4.061 9 C -0.010 4.010 10 N -0.275 5.275 11 N -0.062 5.062 12 N -0.256 5.256 13 C 0.076 3.924 14 C 0.118 3.882 15 C -0.102 4.102 16 H 0.085 0.915 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.205 0.795 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.163 -0.794 -18.899 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.034 4.034 5 N -0.335 5.335 6 C 0.395 3.605 7 O -0.410 6.410 8 C -0.196 4.196 9 C -0.170 4.170 10 N -0.138 5.138 11 N -0.043 5.043 12 N -0.052 5.052 13 C -0.064 4.064 14 C -0.003 4.003 15 C -0.122 4.122 16 H 0.104 0.896 17 C 0.037 3.963 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.221 0.779 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.218 0.782 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.072 -1.860 -19.914 20.411 hybrid contribution 0.556 0.446 1.963 2.089 sum -3.516 -1.414 -17.950 18.346 Atomic orbital electron populations 1.21851 0.93937 1.02087 1.02176 1.22105 0.96551 0.99841 0.93377 0.88991 1.22684 0.95700 0.87407 0.97565 1.48436 1.52792 1.13830 1.18479 1.16173 0.79537 0.81819 0.82938 1.90837 1.43582 1.39639 1.66963 1.21938 1.12357 0.88618 0.96669 1.24394 1.01373 1.01602 0.89626 1.74904 1.18281 0.98952 1.21656 1.78260 1.12755 1.11701 1.01628 1.47645 1.38586 1.10764 1.08215 1.22571 1.02324 0.78971 1.02561 1.22638 0.97209 1.00485 0.79987 1.22539 0.96952 0.97934 0.94773 0.89623 1.20628 0.96712 0.92676 0.86275 1.42373 1.79353 1.05927 1.10115 1.19199 1.36149 0.91270 0.90738 0.91147 1.24750 1.02295 0.95481 0.98315 1.69657 1.54321 1.04526 1.29458 0.86199 0.78178 0.78484 0.83365 1.21725 1.21771 1.20741 0.92625 0.91649 0.92526 0.90617 0.89955 0.77859 0.88542 0.87802 0.86584 0.88821 0.90026 0.95974 0.95730 0.78217 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.90 37.15 0.33 -0.99 16 2 C -0.10 -1.01 3.17 -89.25 -0.28 -1.29 16 3 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 4 C 0.09 0.82 4.91 -2.98 -0.01 0.80 16 5 N -0.60 -7.59 3.29 -171.32 -0.56 -8.16 16 6 C 0.61 8.45 7.87 -12.60 -0.10 8.35 16 7 O -0.53 -8.87 15.16 5.26 0.08 -8.79 16 8 C -0.06 -0.75 6.93 -82.33 -0.57 -1.32 16 9 C -0.01 -0.11 10.42 -17.35 -0.18 -0.29 16 10 N -0.28 -3.57 12.35 30.47 0.38 -3.20 16 11 N -0.06 -0.81 13.14 60.35 0.79 -0.01 16 12 N -0.26 -2.99 3.79 -64.12 -0.24 -3.24 16 13 C 0.08 0.63 10.83 59.85 0.65 1.28 16 14 C 0.12 1.73 6.47 -2.31 -0.01 1.71 16 15 C -0.10 -1.46 2.60 -88.93 -0.23 -1.69 16 16 H 0.09 1.34 7.86 -51.93 -0.41 0.93 16 17 C 0.17 2.98 5.59 -4.04 -0.02 2.96 16 18 N -0.73 -17.66 5.52 -59.91 -0.33 -17.99 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.08 0.64 5.40 -51.93 -0.28 0.36 16 32 H 0.20 1.57 5.04 -52.49 -0.26 1.30 16 33 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.12 1.05 6.65 -51.93 -0.35 0.71 16 36 H 0.09 1.64 7.81 -51.93 -0.41 1.23 16 37 H 0.08 1.19 7.94 -51.93 -0.41 0.77 16 38 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.38 9.85 7.67 -40.82 -0.31 9.54 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -33.40 337.47 -5.53 -38.93 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.75 Total: 5.08 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.68 Total: 2.36 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.76 Total: -59.69 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.40 -5.53 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106073497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.141 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds