Wall clock time and date at job start Fri Apr 10 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.28799 * 2 1 4 4 C 1.54008 * 110.32967 * 237.86992 * 2 1 3 5 5 N 1.47484 * 107.08193 * 242.41189 * 4 2 1 6 6 C 1.34775 * 127.03259 * 154.51899 * 5 4 2 7 7 O 1.21618 * 120.00301 * 185.56433 * 6 5 4 8 8 C 1.47237 * 119.99948 * 5.83691 * 6 5 4 9 9 C 1.37003 * 127.18694 * 5.99619 * 8 6 5 10 10 N 1.33325 * 106.36967 * 179.97438 * 9 8 6 11 11 N 1.28510 * 109.43876 * 0.02562 * 10 9 8 12 12 N 1.28711 * 110.63966 * 359.70844 * 11 10 9 13 13 C 1.46497 * 126.03867 * 180.31349 * 12 11 10 14 14 C 1.48118 * 105.93351 * 334.77317 * 5 4 2 15 15 C 1.54598 * 103.42046 * 39.02934 * 14 5 4 16 16 H 1.08997 * 110.57998 * 81.16785 * 15 14 5 17 17 C 1.53001 * 110.98838 * 204.37460 * 15 14 5 18 18 N 1.46506 * 109.46744 * 288.64869 * 17 15 14 19 19 C 1.36935 * 119.99742 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00426 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99700 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00063 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99636 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46836 * 90.00490 * 23 21 19 25 25 H 1.48504 * 109.46730 * 209.99846 * 23 21 19 26 26 H 1.48493 * 109.47317 * 330.00310 * 23 21 19 27 27 H 1.09003 * 109.47056 * 180.67994 * 1 2 3 28 28 H 1.08998 * 109.47365 * 300.67687 * 1 2 3 29 29 H 1.08997 * 109.47892 * 60.68423 * 1 2 3 30 30 H 1.08996 * 109.90918 * 123.04636 * 4 2 1 31 31 H 1.09001 * 110.06842 * 1.86394 * 4 2 1 32 32 H 1.07995 * 126.82007 * 0.02562 * 9 8 6 33 33 H 1.09008 * 109.47302 * 264.61875 * 13 12 11 34 34 H 1.09001 * 109.46896 * 24.61936 * 13 12 11 35 35 H 1.08997 * 109.47130 * 144.62183 * 13 12 11 36 36 H 1.08997 * 110.65874 * 157.50761 * 14 5 4 37 37 H 1.08993 * 110.66507 * 280.62981 * 14 5 4 38 38 H 1.08993 * 109.47571 * 48.64507 * 17 15 14 39 39 H 1.09004 * 109.47420 * 168.65352 * 17 15 14 40 40 H 0.97001 * 119.99989 * 0.02562 * 18 17 15 41 41 H 0.97009 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8277 -1.9216 -0.7104 6 6 3.0615 -3.0871 -1.3455 7 8 3.6233 -3.9950 -0.7632 8 6 2.6421 -3.2591 -2.7464 9 6 2.1113 -2.3057 -3.5749 10 7 1.8849 -2.9070 -4.7431 11 7 2.2405 -4.1395 -4.6658 12 7 2.7063 -4.4047 -3.4956 13 6 3.2131 -5.7028 -3.0435 14 6 3.2790 -1.5396 0.6477 15 6 2.0671 -0.7736 1.2262 16 1 1.3175 -1.4700 1.6020 17 6 2.5053 0.1938 2.3276 18 7 2.8962 -0.5660 3.5177 19 6 3.3278 0.0917 4.6386 20 1 3.3796 1.1704 4.6455 21 6 3.6976 -0.6282 5.7665 22 7 3.6340 -1.9428 5.7582 23 14 4.2871 0.2689 7.2953 24 1 3.1263 0.5684 8.1718 25 1 5.2538 -0.5866 8.0293 26 1 4.9494 1.5378 6.9002 27 1 -0.3633 -1.0276 0.0122 28 1 -0.3634 0.5243 0.8838 29 1 -0.3635 0.5031 -0.8960 30 1 2.7180 -0.1224 -1.8102 31 1 1.2354 -1.1155 -1.8388 32 1 1.9160 -1.2721 -3.3306 33 1 2.4188 -6.2438 -2.5290 34 1 3.5486 -6.2816 -3.9041 35 1 4.0488 -5.5489 -2.3609 36 1 3.4936 -2.4257 1.2450 37 1 4.1523 -0.8897 0.5942 38 1 3.3532 0.7827 1.9779 39 1 1.6788 0.8593 2.5768 40 1 2.8500 -1.5349 3.5114 41 1 3.8921 -2.4459 6.5465 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106073497.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:27 Heat of formation + Delta-G solvation = 61.958107 kcal Electronic energy + Delta-G solvation = -23630.582840 eV Core-core repulsion = 20161.554514 eV Total energy + Delta-G solvation = -3469.028326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.45416 -41.21508 -39.18302 -36.54110 -35.71225 -34.38892 -33.05001 -32.69187 -30.53068 -29.13499 -27.65824 -27.20461 -25.40166 -24.34060 -23.37472 -22.48197 -21.15660 -20.89187 -19.19850 -18.47345 -18.03118 -17.93618 -17.22431 -16.80460 -16.42608 -15.74671 -15.61477 -15.31577 -15.07029 -14.84171 -14.45638 -14.32196 -14.09527 -13.93089 -13.62481 -13.38698 -13.30909 -13.00980 -12.88470 -12.73718 -12.42585 -12.27868 -12.10408 -11.93117 -11.74084 -11.54283 -11.43280 -11.35090 -11.26202 -10.91349 -10.67463 -9.86027 -8.97185 -7.92885 -5.21556 -0.23830 0.94183 1.13915 1.48962 1.50336 1.58753 1.80614 1.86093 2.57705 3.04319 3.30868 3.41254 3.51597 3.62320 3.66893 3.82719 3.85892 4.15993 4.20947 4.23970 4.39796 4.47566 4.52434 4.55129 4.59213 4.64865 4.80245 4.84389 4.86320 4.90191 4.99797 5.10093 5.23119 5.24620 5.29605 5.38510 5.52127 5.56945 6.27402 6.29010 6.73920 7.16963 7.35408 8.12417 8.33159 9.30704 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.003409 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.643428 B = 8212.546018 C = 9078.892162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.112 0.888 4 C 0.085 3.915 5 N -0.599 5.599 6 C 0.607 3.393 7 O -0.572 6.572 8 C -0.077 4.077 9 C 0.008 3.992 10 N -0.296 5.296 11 N -0.073 5.073 12 N -0.254 5.254 13 C 0.070 3.930 14 C 0.122 3.878 15 C -0.094 4.094 16 H 0.066 0.934 17 C 0.164 3.836 18 N -0.748 5.748 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.267 1.267 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.238 0.762 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.033 0.967 39 H 0.031 0.969 40 H 0.371 0.629 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.806 1.324 -20.671 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.036 4.036 5 N -0.331 5.331 6 C 0.394 3.606 7 O -0.452 6.452 8 C -0.211 4.211 9 C -0.152 4.152 10 N -0.158 5.158 11 N -0.054 5.054 12 N -0.051 5.051 13 C -0.070 4.070 14 C 0.000 4.000 15 C -0.114 4.114 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.391 5.391 19 C -0.373 4.373 20 H 0.098 0.902 21 C -0.270 4.270 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.191 1.191 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.254 0.746 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.203 0.797 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.744 0.320 -21.741 22.255 hybrid contribution 0.734 -0.194 2.466 2.580 sum -4.010 0.126 -19.275 19.688 Atomic orbital electron populations 1.21853 0.92977 1.01811 1.03241 1.22103 0.97266 1.00213 0.91170 0.87025 1.23004 0.96673 0.86428 0.97487 1.48421 1.52645 1.14485 1.17552 1.16397 0.79063 0.81581 0.83516 1.90819 1.45419 1.41013 1.67953 1.21801 1.13758 0.89536 0.95989 1.24902 0.99437 1.02531 0.88351 1.74900 1.19154 0.99176 1.22595 1.78231 1.13192 1.12013 1.01988 1.47929 1.37817 1.11510 1.07856 1.22798 1.02300 0.78224 1.03635 1.22402 0.97694 0.98924 0.80969 1.22346 0.96291 0.97318 0.95420 0.91551 1.20813 0.96981 0.93109 0.85312 1.42640 1.79338 1.05712 1.11396 1.19656 1.34267 0.91845 0.91515 0.90202 1.25571 1.03718 0.96200 1.01525 1.69827 1.56408 1.06091 1.29922 0.85161 0.77417 0.77651 0.79670 1.21508 1.22621 1.19129 0.93564 0.92620 0.89499 0.87291 0.87907 0.74637 0.87520 0.85153 0.87651 0.92710 0.89700 0.94935 0.95060 0.79715 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.90 71.98 0.64 -1.52 16 2 C -0.09 -1.51 3.17 -9.90 -0.03 -1.54 16 3 H 0.11 1.56 7.86 -2.38 -0.02 1.54 16 4 C 0.09 1.24 4.91 86.53 0.43 1.67 16 5 N -0.60 -14.34 3.29 -814.18 -2.68 -17.02 16 6 C 0.61 16.57 7.87 86.61 0.68 17.25 16 7 O -0.57 -19.66 15.16 -4.09 -0.06 -19.73 16 8 C -0.08 -1.76 6.93 40.41 0.28 -1.48 16 9 C 0.01 0.16 10.42 84.18 0.88 1.04 16 10 N -0.30 -7.05 12.35 -57.50 -0.71 -7.76 16 11 N -0.07 -1.78 13.14 37.02 0.49 -1.30 16 12 N -0.25 -5.66 3.79 -356.76 -1.35 -7.01 16 13 C 0.07 1.11 10.83 127.77 1.38 2.50 16 14 C 0.12 3.61 6.47 86.61 0.56 4.17 16 15 C -0.09 -2.61 2.60 -9.70 -0.03 -2.63 16 16 H 0.07 2.11 7.86 -2.39 -0.02 2.09 16 17 C 0.16 5.78 5.59 86.38 0.48 6.27 16 18 N -0.75 -36.50 5.52 -343.44 -1.90 -38.40 16 19 C -0.24 -13.08 9.99 84.04 0.84 -12.24 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 22 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 23 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.99 7.90 -2.39 -0.02 0.97 16 31 H 0.10 1.14 5.40 -2.39 -0.01 1.12 16 32 H 0.24 2.53 5.04 -2.91 -0.01 2.51 16 33 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.96 6.65 -2.39 -0.02 1.94 16 36 H 0.05 2.04 7.81 -2.39 -0.02 2.02 16 37 H 0.08 2.43 7.94 -2.39 -0.02 2.42 16 38 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 39 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.37 19.80 7.67 -92.71 -0.71 19.08 16 41 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -74.27 337.47 3.02 -71.25 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.34 Total: 22.18 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 6.58 Total: 9.49 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -5.87 Total: -130.91 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.27 3.02 -71.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106073497.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.211 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds