Wall clock time and date at job start Fri Apr 10 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47043 * 2 1 4 4 C 1.50712 * 109.46711 * 240.00328 * 2 1 3 5 5 H 1.08002 * 119.99762 * 245.61424 * 4 2 1 6 6 C 1.37875 * 119.99888 * 65.61977 * 4 2 1 7 7 N 1.31512 * 119.99587 * 196.66887 * 6 4 2 8 8 Si 1.86802 * 120.00353 * 16.66608 * 6 4 2 9 9 H 1.48492 * 109.47318 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46945 * 60.00075 * 8 6 4 11 11 H 1.48495 * 109.47111 * 300.00610 * 8 6 4 12 12 N 1.46894 * 109.47193 * 120.00892 * 2 1 3 13 13 C 1.46898 * 111.00114 * 176.04709 * 12 2 1 14 14 C 1.38586 * 110.99572 * 299.99468 * 12 2 1 15 15 N 1.31211 * 126.47298 * 0.02805 * 14 12 2 16 16 N 1.28534 * 109.86013 * 179.97438 * 15 14 12 17 17 C 1.30296 * 110.05279 * 0.02562 * 16 15 14 18 18 C 1.50696 * 126.34559 * 179.97438 * 17 16 15 19 19 H 1.09004 * 110.21438 * 196.95542 * 18 17 16 20 20 C 1.54480 * 110.24736 * 75.02354 * 18 17 16 21 21 C 1.54625 * 101.76664 * 215.58388 * 20 18 17 22 22 C 1.51287 * 104.19311 * 24.79446 * 21 20 18 23 23 O 1.21281 * 124.93596 * 163.71216 * 22 21 20 24 24 N 1.34414 * 110.12048 * 343.74860 * 22 21 20 25 25 N 1.36459 * 126.47289 * 179.71494 * 14 12 2 26 26 C 1.46503 * 127.13285 * 0.03966 * 25 14 12 27 27 H 1.08998 * 109.46923 * 307.75692 * 1 2 3 28 28 H 1.09002 * 109.47077 * 67.75246 * 1 2 3 29 29 H 1.09006 * 109.46887 * 187.75455 * 1 2 3 30 30 H 0.96994 * 120.00186 * 356.04069 * 7 6 4 31 31 H 1.09003 * 109.47431 * 59.99657 * 13 12 2 32 32 H 1.09000 * 109.47578 * 179.97438 * 13 12 2 33 33 H 1.09002 * 109.47199 * 299.99670 * 13 12 2 34 34 H 1.08998 * 110.96754 * 333.70263 * 20 18 17 35 35 H 1.08999 * 110.96466 * 97.42350 * 20 18 17 36 36 H 1.08997 * 110.48837 * 143.47636 * 21 20 18 37 37 H 1.09001 * 110.48300 * 266.12124 * 21 20 18 38 38 H 0.96998 * 124.35233 * 179.59230 * 24 22 21 39 39 H 1.08994 * 109.47095 * 90.02633 * 26 25 14 40 40 H 1.09001 * 109.46407 * 210.02943 * 26 25 14 41 41 H 1.09002 * 109.47152 * 330.01787 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5763 -1.6384 -1.1342 6 6 1.7973 -0.1756 -2.4795 7 7 1.9319 -0.9251 -3.5517 8 14 1.2877 1.6136 -2.6487 9 1 1.0971 1.9404 -4.0846 10 1 2.3457 2.4857 -2.0782 11 1 0.0147 1.8369 -1.9174 12 7 2.0197 -0.6926 1.1993 13 6 3.4851 -0.7947 1.1869 14 6 1.5754 -0.0643 2.3518 15 7 0.8183 1.0056 2.4146 16 7 0.5996 1.3143 3.6429 17 6 1.1996 0.4670 4.4302 18 6 1.1874 0.4850 5.9370 19 1 1.9931 -0.1367 6.3277 20 6 -0.1761 -0.0118 6.4666 21 6 -0.3700 0.8745 7.7187 22 6 0.4621 2.1055 7.4342 23 8 0.3673 3.1598 8.0261 24 7 1.3210 1.8611 6.4296 25 7 1.8377 -0.4448 3.6358 26 6 2.6399 -1.5902 4.0723 27 1 -0.3633 0.6292 0.8125 28 1 -0.3633 0.3891 -0.9512 29 1 -0.3633 -1.0183 0.1387 30 1 2.2517 -1.8371 -3.4689 31 1 3.9187 0.2050 1.1591 32 1 3.8210 -1.3111 2.0860 33 1 3.8030 -1.3532 0.3065 34 1 -0.9661 0.1657 5.7369 35 1 -0.1283 -1.0664 6.7379 36 1 -1.4198 1.1426 7.8375 37 1 -0.0028 0.3631 8.6085 38 1 1.9484 2.5106 6.0757 39 1 3.6799 -1.2839 4.1842 40 1 2.2634 -1.9541 5.0284 41 1 2.5730 -2.3850 3.3294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121263883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:53 Heat of formation + Delta-G solvation = 70.239437 kcal Electronic energy + Delta-G solvation = -24188.852219 eV Core-core repulsion = 20720.182998 eV Total energy + Delta-G solvation = -3468.669221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.85489 -40.39209 -37.54751 -36.68301 -34.97112 -32.88541 -31.61038 -30.51021 -29.99103 -28.02026 -27.17472 -25.12760 -24.37101 -22.98396 -21.81927 -20.81374 -20.66694 -19.53546 -17.62573 -17.52363 -17.16184 -16.37423 -16.30167 -15.55192 -15.22341 -14.70356 -14.37891 -13.94052 -13.80271 -13.61138 -13.43721 -13.38760 -13.01065 -12.99906 -12.62422 -12.21867 -12.06019 -11.84785 -11.44435 -11.26429 -11.21291 -10.82371 -10.56291 -10.29275 -10.11943 -10.08269 -9.96426 -9.68049 -9.50242 -9.34251 -8.86909 -8.32245 -7.69023 -6.58273 -4.19380 1.84181 2.23806 2.45739 2.99179 3.22294 3.40630 3.44918 3.60568 3.87743 4.06949 4.21082 4.27512 4.43245 4.47790 4.52665 4.66793 4.90539 4.95556 5.16762 5.19483 5.31003 5.35596 5.41901 5.50295 5.68075 5.78272 5.85041 6.04153 6.28329 6.48443 6.49409 6.54915 6.69588 6.78049 6.88161 6.98875 7.25058 7.51999 7.55354 8.00621 8.08255 8.28084 8.78577 9.05431 9.48116 10.84084 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.003971 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.226995 B = 7049.220943 C = 7561.516797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.207 3.793 3 H 0.013 0.987 4 C -0.603 4.603 5 H 0.066 0.934 6 C 0.039 3.961 7 N -0.899 5.899 8 Si 1.038 2.962 9 H -0.284 1.284 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.444 5.444 13 C 0.035 3.965 14 C 0.391 3.609 15 N -0.321 5.321 16 N -0.261 5.261 17 C 0.121 3.879 18 C 0.235 3.765 19 H 0.096 0.904 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.525 3.475 23 O -0.533 6.533 24 N -0.712 5.712 25 N -0.487 5.487 26 C 0.075 3.925 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.269 0.731 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.414 0.586 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -3.445 20.850 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.102 3.898 3 H 0.031 0.969 4 C -0.641 4.641 5 H 0.084 0.916 6 C -0.167 4.167 7 N -0.532 5.532 8 Si 0.866 3.134 9 H -0.209 1.209 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.167 5.167 13 C -0.112 4.112 14 C 0.036 3.964 15 N -0.167 5.167 16 N -0.101 5.101 17 C -0.147 4.147 18 C 0.126 3.874 19 H 0.113 0.887 20 C -0.162 4.162 21 C -0.194 4.194 22 C 0.312 3.688 23 O -0.410 6.410 24 N -0.367 5.367 25 N -0.184 5.184 26 C -0.068 4.068 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.253 0.747 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.036 -1.154 19.583 19.618 hybrid contribution 1.933 -1.677 1.111 2.790 sum 1.897 -2.831 20.694 20.973 Atomic orbital electron populations 1.22375 0.96896 1.00629 1.01505 1.19701 0.93172 0.92461 0.84500 0.96922 1.21911 1.41561 1.10345 0.90274 0.91626 1.25645 0.94355 1.04963 0.91738 1.70882 1.41338 1.09897 1.31115 0.84128 0.77832 0.75223 0.76230 1.20943 1.20959 1.19385 1.58952 1.11116 1.47594 0.99008 1.22438 0.84559 1.01195 1.03011 1.23394 0.97835 0.90945 0.84256 1.74843 1.20290 1.10858 1.10668 1.73951 1.18149 1.21396 0.96587 1.24307 1.02032 0.92953 0.95403 1.19575 0.99556 0.84474 0.83795 0.88654 1.22736 0.95872 1.00419 0.97209 1.22370 1.02546 0.95072 0.99429 1.20784 0.79962 0.89137 0.78938 1.90768 1.68747 1.28536 1.52915 1.46103 1.40316 1.13834 1.36489 1.45978 1.41856 1.24736 1.05863 1.22098 0.95022 0.87400 1.02262 0.92400 0.92215 0.93944 0.92129 0.94907 0.92927 0.88159 0.88804 0.88632 0.87513 0.87523 0.74677 0.90517 0.89504 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.52 37.16 0.32 -3.36 16 2 C 0.21 4.92 1.31 -68.86 -0.09 4.83 16 3 H 0.01 0.33 6.78 -51.93 -0.35 -0.02 16 4 C -0.60 -16.03 8.06 -34.44 -0.28 -16.31 16 5 H 0.07 1.83 6.87 -52.49 -0.36 1.47 16 6 C 0.04 1.10 5.29 -17.82 -0.09 1.00 16 7 N -0.90 -26.59 13.70 55.43 0.76 -25.83 16 8 Si 1.04 25.13 26.26 -169.99 -4.46 20.66 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.20 5.74 56.52 0.32 -5.87 16 12 N -0.44 -8.91 4.69 -176.08 -0.83 -9.74 16 13 C 0.04 0.60 9.05 60.06 0.54 1.14 16 14 C 0.39 7.28 6.77 -318.86 -2.16 5.12 16 15 N -0.32 -6.63 9.04 30.32 0.27 -6.36 16 16 N -0.26 -4.69 12.16 32.99 0.40 -4.29 16 17 C 0.12 1.63 6.87 -154.02 -1.06 0.57 16 18 C 0.23 2.07 3.80 -68.16 -0.26 1.81 16 19 H 0.10 0.55 7.43 -51.93 -0.39 0.16 16 20 C -0.12 -0.88 6.67 -25.10 -0.17 -1.05 16 21 C -0.15 -1.10 6.86 -26.74 -0.18 -1.28 16 22 C 0.53 5.98 8.43 -10.86 -0.09 5.89 16 23 O -0.53 -8.34 18.03 5.56 0.10 -8.24 16 24 N -0.71 -7.37 5.85 -53.88 -0.32 -7.68 16 25 N -0.49 -6.65 3.21 -121.46 -0.39 -7.04 16 26 C 0.08 0.63 9.12 59.85 0.55 1.18 16 27 H 0.06 1.33 5.65 -51.93 -0.29 1.04 16 28 H 0.06 1.45 4.83 -51.93 -0.25 1.19 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.27 7.85 8.73 -40.82 -0.36 7.50 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.68 5.31 -51.93 -0.28 0.40 16 33 H 0.10 1.85 6.34 -51.93 -0.33 1.52 16 34 H 0.09 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.41 4.40 8.96 -40.82 -0.37 4.04 16 39 H 0.08 0.52 7.78 -51.93 -0.40 0.12 16 40 H 0.09 0.43 7.59 -51.93 -0.39 0.04 16 41 H 0.10 0.89 7.65 -51.93 -0.40 0.49 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -35.05 326.18 -8.08 -43.13 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.56 Total: 0.92 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.97 Total: -0.45 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.10 Total: -60.94 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.10 Total: -8.24 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.46 Total: 20.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.05 -8.08 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121263883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.369 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds