Wall clock time and date at job start Fri Apr 10 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47043 * 2 1 4 4 C 1.50712 * 109.46711 * 240.00328 * 2 1 3 5 5 H 1.08002 * 119.99762 * 245.61424 * 4 2 1 6 6 C 1.37875 * 119.99888 * 65.61977 * 4 2 1 7 7 N 1.31512 * 119.99587 * 196.66887 * 6 4 2 8 8 Si 1.86802 * 120.00353 * 16.66608 * 6 4 2 9 9 H 1.48492 * 109.47318 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46945 * 60.00075 * 8 6 4 11 11 H 1.48495 * 109.47111 * 300.00610 * 8 6 4 12 12 N 1.46894 * 109.47193 * 120.00892 * 2 1 3 13 13 C 1.46898 * 111.00114 * 176.04709 * 12 2 1 14 14 C 1.38586 * 110.99572 * 299.99468 * 12 2 1 15 15 N 1.31211 * 126.47298 * 0.02805 * 14 12 2 16 16 N 1.28534 * 109.86013 * 179.97438 * 15 14 12 17 17 C 1.30296 * 110.05279 * 0.02562 * 16 15 14 18 18 C 1.50696 * 126.34559 * 179.97438 * 17 16 15 19 19 H 1.09004 * 110.21438 * 196.95542 * 18 17 16 20 20 C 1.54480 * 110.24736 * 75.02354 * 18 17 16 21 21 C 1.54625 * 101.76664 * 215.58388 * 20 18 17 22 22 C 1.51287 * 104.19311 * 24.79446 * 21 20 18 23 23 O 1.21281 * 124.93596 * 163.71216 * 22 21 20 24 24 N 1.34414 * 110.12048 * 343.74860 * 22 21 20 25 25 N 1.36459 * 126.47289 * 179.71494 * 14 12 2 26 26 C 1.46503 * 127.13285 * 0.03966 * 25 14 12 27 27 H 1.08998 * 109.46923 * 307.75692 * 1 2 3 28 28 H 1.09002 * 109.47077 * 67.75246 * 1 2 3 29 29 H 1.09006 * 109.46887 * 187.75455 * 1 2 3 30 30 H 0.96994 * 120.00186 * 356.04069 * 7 6 4 31 31 H 1.09003 * 109.47431 * 59.99657 * 13 12 2 32 32 H 1.09000 * 109.47578 * 179.97438 * 13 12 2 33 33 H 1.09002 * 109.47199 * 299.99670 * 13 12 2 34 34 H 1.08998 * 110.96754 * 333.70263 * 20 18 17 35 35 H 1.08999 * 110.96466 * 97.42350 * 20 18 17 36 36 H 1.08997 * 110.48837 * 143.47636 * 21 20 18 37 37 H 1.09001 * 110.48300 * 266.12124 * 21 20 18 38 38 H 0.96998 * 124.35233 * 179.59230 * 24 22 21 39 39 H 1.08994 * 109.47095 * 90.02633 * 26 25 14 40 40 H 1.09001 * 109.46407 * 210.02943 * 26 25 14 41 41 H 1.09002 * 109.47152 * 330.01787 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5763 -1.6384 -1.1342 6 6 1.7973 -0.1756 -2.4795 7 7 1.9319 -0.9251 -3.5517 8 14 1.2877 1.6136 -2.6487 9 1 1.0971 1.9404 -4.0846 10 1 2.3457 2.4857 -2.0782 11 1 0.0147 1.8369 -1.9174 12 7 2.0197 -0.6926 1.1993 13 6 3.4851 -0.7947 1.1869 14 6 1.5754 -0.0643 2.3518 15 7 0.8183 1.0056 2.4146 16 7 0.5996 1.3143 3.6429 17 6 1.1996 0.4670 4.4302 18 6 1.1874 0.4850 5.9370 19 1 1.9931 -0.1367 6.3277 20 6 -0.1761 -0.0118 6.4666 21 6 -0.3700 0.8745 7.7187 22 6 0.4621 2.1055 7.4342 23 8 0.3673 3.1598 8.0261 24 7 1.3210 1.8611 6.4296 25 7 1.8377 -0.4448 3.6358 26 6 2.6399 -1.5902 4.0723 27 1 -0.3633 0.6292 0.8125 28 1 -0.3633 0.3891 -0.9512 29 1 -0.3633 -1.0183 0.1387 30 1 2.2517 -1.8371 -3.4689 31 1 3.9187 0.2050 1.1591 32 1 3.8210 -1.3111 2.0860 33 1 3.8030 -1.3532 0.3065 34 1 -0.9661 0.1657 5.7369 35 1 -0.1283 -1.0664 6.7379 36 1 -1.4198 1.1426 7.8375 37 1 -0.0028 0.3631 8.6085 38 1 1.9484 2.5106 6.0757 39 1 3.6799 -1.2839 4.1842 40 1 2.2634 -1.9541 5.0284 41 1 2.5730 -2.3850 3.3294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121263883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:52 Heat of formation + Delta-G solvation = 43.913467 kcal Electronic energy + Delta-G solvation = -24189.993798 eV Core-core repulsion = 20720.182998 eV Total energy + Delta-G solvation = -3469.810801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.07275 -41.21810 -39.09589 -37.64955 -36.10840 -34.87219 -32.26735 -32.05971 -31.44491 -29.04466 -28.08866 -26.78937 -26.05211 -23.91808 -23.21343 -21.74370 -21.56883 -21.07033 -19.63469 -18.52150 -18.01897 -17.62222 -17.38124 -16.87308 -16.29168 -16.12399 -15.48740 -15.39827 -14.95046 -14.75053 -14.57536 -14.26626 -14.21781 -14.08935 -13.74107 -13.60339 -13.51412 -13.09387 -12.92096 -12.63955 -12.37026 -12.21258 -12.09541 -12.02057 -11.68769 -11.39589 -11.08257 -11.04844 -11.00040 -10.80754 -10.42141 -10.26464 -9.15517 -8.79695 -6.39790 0.69817 1.19885 1.46120 1.47169 1.57734 1.68029 1.75615 2.38915 2.41732 2.78944 3.03152 3.10162 3.38652 3.62918 3.72013 3.89732 4.00467 4.05868 4.19600 4.34108 4.37353 4.46325 4.54588 4.60233 4.69238 4.77785 4.85565 4.88605 4.92175 5.00783 5.04395 5.10926 5.14977 5.37253 5.58017 5.69953 5.76507 5.84033 5.96270 6.04071 6.42638 6.60293 7.15665 7.33438 7.78494 8.62814 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.003971 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.226995 B = 7049.220943 C = 7561.516797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.215 3.785 3 H -0.003 1.003 4 C -0.592 4.592 5 H 0.046 0.954 6 C -0.004 4.004 7 N -0.930 5.930 8 Si 1.068 2.932 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.254 1.254 12 N -0.450 5.450 13 C 0.037 3.963 14 C 0.368 3.632 15 N -0.365 5.365 16 N -0.310 5.310 17 C 0.155 3.845 18 C 0.233 3.767 19 H 0.146 0.854 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.515 3.485 23 O -0.587 6.587 24 N -0.714 5.714 25 N -0.474 5.474 26 C 0.058 3.942 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.258 0.742 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.409 0.591 39 H 0.100 0.900 40 H 0.134 0.866 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -4.786 24.294 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.108 3.892 3 H 0.015 0.985 4 C -0.630 4.630 5 H 0.064 0.936 6 C -0.204 4.204 7 N -0.566 5.566 8 Si 0.891 3.109 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.179 1.179 12 N -0.173 5.173 13 C -0.109 4.109 14 C 0.010 3.990 15 N -0.210 5.210 16 N -0.149 5.149 17 C -0.115 4.115 18 C 0.125 3.875 19 H 0.164 0.836 20 C -0.155 4.155 21 C -0.181 4.181 22 C 0.304 3.696 23 O -0.467 6.467 24 N -0.367 5.367 25 N -0.170 5.170 26 C -0.082 4.082 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.161 0.839 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.152 0.848 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.380 -2.543 23.053 23.196 hybrid contribution 1.876 -1.321 0.215 2.304 sum 2.256 -3.864 23.268 23.694 Atomic orbital electron populations 1.22233 0.96757 1.00289 1.01025 1.19343 0.93119 0.91411 0.85357 0.98528 1.22044 1.40071 1.09343 0.91575 0.93629 1.26672 0.94395 1.07467 0.91880 1.70976 1.43829 1.09732 1.32043 0.83729 0.78626 0.72085 0.76414 1.20857 1.19776 1.17880 1.58789 1.12495 1.47508 0.98546 1.22481 0.83185 1.00869 1.04411 1.23103 0.98942 0.91533 0.85394 1.74663 1.21394 1.12350 1.12600 1.73865 1.20943 1.23803 0.96313 1.25212 0.98539 0.90689 0.97057 1.20186 1.02589 0.84322 0.80422 0.83627 1.22802 0.93653 1.02834 0.96169 1.22411 1.01955 0.92917 1.00802 1.21578 0.79957 0.89692 0.78393 1.90739 1.70212 1.30917 1.54818 1.46258 1.39800 1.14593 1.36088 1.46177 1.41388 1.25574 1.03843 1.22637 0.95917 0.85446 1.04235 0.91854 0.93363 0.94417 0.93247 0.95873 0.88259 0.90204 0.91361 0.84216 0.87235 0.83944 0.75316 0.88158 0.84789 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 8.52 71.98 0.61 -6.28 16 2 C 0.21 10.32 1.31 44.17 0.06 10.38 16 3 H 0.00 -0.15 6.78 -2.39 -0.02 -0.16 16 4 C -0.59 -32.21 8.06 25.60 0.21 -32.00 16 5 H 0.05 2.62 6.87 -2.91 -0.02 2.60 16 6 C 0.00 -0.20 5.29 84.65 0.45 0.25 16 7 N -0.93 -56.48 13.70 21.45 0.29 -56.19 16 8 Si 1.07 51.36 26.26 68.60 1.80 53.16 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.25 -11.55 5.74 99.48 0.57 -10.98 16 12 N -0.45 -17.87 4.69 -710.99 -3.33 -21.21 16 13 C 0.04 1.24 9.05 127.69 1.16 2.39 16 14 C 0.37 13.24 6.77 260.11 1.76 15.00 16 15 N -0.36 -14.99 9.04 -58.00 -0.52 -15.51 16 16 N -0.31 -10.89 12.16 -49.54 -0.60 -11.49 16 17 C 0.16 3.71 6.87 137.64 0.95 4.65 16 18 C 0.23 3.01 3.80 44.70 0.17 3.18 16 19 H 0.15 0.58 7.43 -2.38 -0.02 0.57 16 20 C -0.12 -1.08 6.67 31.65 0.21 -0.87 16 21 C -0.14 -1.44 6.86 30.59 0.21 -1.23 16 22 C 0.52 10.67 8.43 87.90 0.74 11.41 16 23 O -0.59 -18.10 18.03 -3.03 -0.05 -18.16 16 24 N -0.71 -12.97 5.85 -442.96 -2.59 -15.56 16 25 N -0.47 -11.35 3.21 -538.18 -1.73 -13.08 16 26 C 0.06 0.67 9.12 127.77 1.17 1.83 16 27 H 0.06 2.95 5.65 -2.39 -0.01 2.94 16 28 H 0.05 2.35 4.83 -2.39 -0.01 2.34 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.26 15.66 8.73 -92.71 -0.81 14.86 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 2.29 5.31 -2.39 -0.01 2.28 16 33 H 0.08 2.97 6.34 -2.39 -0.02 2.95 16 34 H 0.07 1.06 7.90 -2.39 -0.02 1.04 16 35 H 0.14 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.14 0.51 8.14 -2.39 -0.02 0.50 16 38 H 0.41 8.11 8.96 -92.71 -0.83 7.28 16 39 H 0.10 0.77 7.78 -2.39 -0.02 0.75 16 40 H 0.13 0.33 7.59 -2.39 -0.02 0.31 16 41 H 0.09 1.26 7.65 -2.39 -0.02 1.25 16 Total: -1.00 -82.61 326.18 1.02 -81.59 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.07 Total: 7.73 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.69 Total: 8.71 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -8.48 Total: -133.03 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 1.80 Total: 53.16 kcal Total: -82.61 1.02 -81.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121263883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.501 kcal (2) G-P(sol) polarization free energy of solvation -82.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds