Wall clock time and date at job start Fri Apr 10 2020 17:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36739 * 127.13536 * 2 1 4 4 C 1.50696 * 126.34799 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47347 * 269.71384 * 4 3 2 6 6 C 1.52997 * 109.47228 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.47201 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99736 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00027 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99789 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47074 * 90.00384 * 11 9 7 13 13 H 1.48506 * 109.46948 * 210.00188 * 11 9 7 14 14 H 1.48497 * 109.47456 * 330.00119 * 11 9 7 15 15 N 1.30291 * 107.30423 * 179.73453 * 3 2 1 16 16 N 1.28527 * 110.05589 * 0.26507 * 15 3 2 17 17 C 1.31217 * 109.85914 * 359.97438 * 16 15 3 18 18 N 1.38587 * 126.47688 * 180.02562 * 17 16 15 19 19 C 1.47188 * 111.00101 * 250.00906 * 18 17 16 20 20 C 1.52985 * 108.72706 * 54.36790 * 19 18 17 21 21 N 1.46005 * 110.04718 * 50.28894 * 20 19 18 22 22 C 1.33711 * 122.92760 * 341.84223 * 21 20 19 23 23 O 1.21283 * 118.62587 * 181.68155 * 22 21 20 24 24 C 1.46903 * 110.99498 * 12.89757 * 18 17 16 25 25 H 1.08998 * 109.47060 * 84.88150 * 1 2 3 26 26 H 1.08996 * 109.47120 * 204.88408 * 1 2 3 27 27 H 1.08997 * 109.47229 * 324.88357 * 1 2 3 28 28 H 1.09004 * 109.47182 * 149.71121 * 4 3 2 29 29 H 1.09004 * 109.47373 * 29.71668 * 4 3 2 30 30 H 1.08994 * 109.47209 * 59.99660 * 5 4 3 31 31 H 1.09000 * 109.46606 * 299.99909 * 5 4 3 32 32 H 1.09009 * 109.47028 * 299.99687 * 6 5 4 33 33 H 1.08994 * 109.47498 * 59.99598 * 6 5 4 34 34 H 0.96995 * 119.99842 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.59281 * 174.13544 * 19 18 17 36 36 H 1.08996 * 109.59274 * 294.59285 * 19 18 17 37 37 H 1.09001 * 109.37472 * 170.46923 * 20 19 18 38 38 H 1.09000 * 109.37615 * 290.22816 * 20 19 18 39 39 H 0.96996 * 118.53565 * 161.85581 * 21 20 19 40 40 H 1.09000 * 109.38842 * 47.09393 * 24 18 17 41 41 H 1.09002 * 109.38639 * 166.77166 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8621 2.5349 -0.0005 5 6 1.7245 3.0255 -1.4432 6 6 1.2901 4.4926 -1.4437 7 6 1.1540 4.9757 -2.8647 8 1 1.3574 4.3037 -3.6853 9 6 0.7698 6.2756 -3.1171 10 7 0.6506 6.6970 -4.3571 11 14 0.4174 7.4376 -1.6977 12 1 1.6662 8.1438 -1.3143 13 1 -0.6053 8.4310 -2.1135 14 1 -0.0891 6.6621 -0.5370 15 7 3.5161 0.6481 0.0058 16 7 3.5212 -0.6372 0.0038 17 6 2.2888 -1.0878 -0.0028 18 7 1.8977 -2.4173 -0.0063 19 6 1.3046 -2.7893 -1.3010 20 6 2.2949 -2.4398 -2.4135 21 7 3.6127 -2.9846 -2.0998 22 6 3.9678 -3.3642 -0.8679 23 8 5.0939 -3.7777 -0.6892 24 6 3.0302 -3.2999 0.3045 25 1 -0.3633 0.0917 -1.0235 26 1 -0.3633 -0.9322 0.4324 27 1 -0.3633 0.8406 0.5911 28 1 2.6094 3.1357 0.5179 29 1 0.9029 2.6297 0.5085 30 1 0.9773 2.4248 -1.9616 31 1 2.6837 2.9308 -1.9521 32 1 0.3310 4.5877 -0.9345 33 1 2.0377 5.0930 -0.9254 34 1 0.3799 7.6113 -4.5347 35 1 1.1013 -3.8601 -1.3157 36 1 0.3771 -2.2367 -1.4504 37 1 1.9441 -2.8614 -3.3554 38 1 2.3663 -1.3562 -2.5068 39 1 4.2594 -3.0750 -2.8170 40 1 3.5629 -2.9128 1.1731 41 1 2.6589 -4.3004 0.5262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121303753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:57 Heat of formation + Delta-G solvation = 53.874540 kcal Electronic energy + Delta-G solvation = -23892.685420 eV Core-core repulsion = 20423.306564 eV Total energy + Delta-G solvation = -3469.378856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.15804 -40.68353 -37.71727 -35.47504 -34.92002 -34.39141 -32.44634 -30.43002 -30.16417 -28.10706 -27.35793 -26.37846 -24.15272 -23.55707 -21.79797 -20.81745 -20.19429 -19.78631 -17.91811 -17.22020 -16.94713 -16.72223 -16.39673 -15.99527 -15.53852 -15.06910 -14.61741 -14.35181 -14.14672 -13.86430 -13.72544 -13.42909 -13.11093 -12.94919 -12.75129 -12.32406 -12.24464 -11.99909 -11.87241 -11.52391 -11.29145 -11.06971 -10.87563 -10.33829 -10.20718 -10.08262 -9.96659 -9.81272 -9.52071 -9.37509 -9.26689 -8.59348 -8.45297 -6.09585 -4.08428 1.63853 2.03648 2.42073 2.77095 2.93962 3.27139 3.34722 3.35408 3.36016 4.01431 4.23127 4.30572 4.39949 4.46865 4.52648 4.63549 4.81904 4.89169 4.97942 5.02710 5.06676 5.15172 5.24208 5.25410 5.33292 5.61746 5.65363 5.83168 5.87795 6.03104 6.36262 6.40021 6.47124 6.50555 6.74875 6.95673 6.99733 7.18916 7.31830 7.72256 7.94384 8.47399 8.76598 8.94725 9.52284 11.03862 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.003348 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.101440 B = 8362.043061 C = 8515.951159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.474 5.474 3 C 0.205 3.795 4 C -0.039 4.039 5 C -0.094 4.094 6 C -0.012 4.012 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.903 5.903 11 Si 0.881 3.119 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.265 1.265 15 N -0.284 5.284 16 N -0.308 5.308 17 C 0.324 3.676 18 N -0.444 5.444 19 C 0.036 3.964 20 C 0.077 3.923 21 N -0.717 5.717 22 C 0.508 3.492 23 O -0.545 6.545 24 C 0.058 3.942 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.403 0.597 40 H 0.124 0.876 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 -20.955 8.621 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.168 5.168 3 C -0.062 4.062 4 C -0.078 4.078 5 C -0.133 4.133 6 C -0.050 4.050 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.542 5.542 11 Si 0.708 3.292 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.190 1.190 15 N -0.124 5.124 16 N -0.152 5.152 17 C -0.032 4.032 18 N -0.167 5.167 19 C -0.092 4.092 20 C -0.049 4.049 21 N -0.371 5.371 22 C 0.293 3.707 23 O -0.421 6.421 24 C -0.072 4.072 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.239 0.761 40 H 0.142 0.858 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.169 -21.078 9.190 23.212 hybrid contribution -1.065 0.854 -0.356 1.411 sum -4.235 -20.224 8.835 22.472 Atomic orbital electron populations 1.22135 0.75213 1.05256 1.04338 1.46062 1.08739 1.05589 1.56405 1.25262 0.86368 0.92020 1.02562 1.20394 1.02089 0.83909 1.01434 1.21458 1.01617 0.98721 0.91462 1.19575 0.95979 0.91246 0.98182 1.21095 1.46290 0.97346 0.91275 0.91141 1.25038 0.94845 0.98121 0.95491 1.69912 1.48075 1.17384 1.18806 0.86767 0.78440 0.80879 0.83110 1.20183 1.21425 1.18999 1.74074 1.17385 1.02072 1.18824 1.74656 1.15464 1.04097 1.20997 1.22350 0.87164 0.87206 1.06509 1.59209 1.29765 0.97072 1.30700 1.22813 0.97726 1.03767 0.84870 1.22026 0.83377 0.99776 0.99708 1.45400 1.16041 1.65122 1.10506 1.20637 0.88882 0.76520 0.84618 1.90767 1.20557 1.46894 1.83888 1.22357 0.88650 0.98522 0.97691 0.89891 0.88791 0.88795 0.88370 0.90290 0.92997 0.91900 0.96535 0.96607 0.92686 0.87604 0.87914 0.89137 0.91519 0.76076 0.85814 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.05 59.85 0.60 1.16 16 2 N -0.47 -5.70 3.21 -121.46 -0.39 -6.09 16 3 C 0.21 3.10 7.32 -154.02 -1.13 1.98 16 4 C -0.04 -0.57 5.59 -27.89 -0.16 -0.72 16 5 C -0.09 -1.72 5.14 -26.73 -0.14 -1.85 16 6 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 7 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 10 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 11 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 15 N -0.28 -5.10 12.18 32.99 0.40 -4.70 16 16 N -0.31 -5.11 10.52 30.32 0.32 -4.79 16 17 C 0.32 4.13 5.26 -318.87 -1.68 2.45 16 18 N -0.44 -4.04 5.04 -175.91 -0.89 -4.93 16 19 C 0.04 0.22 5.94 -3.67 -0.02 0.20 16 20 C 0.08 0.61 6.66 -4.32 -0.03 0.59 16 21 N -0.72 -7.40 5.51 -61.07 -0.34 -7.74 16 22 C 0.51 6.31 6.64 -11.68 -0.08 6.23 16 23 O -0.54 -9.00 17.82 5.56 0.10 -8.90 16 24 C 0.06 0.56 5.58 -5.19 -0.03 0.53 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.09 0.64 7.41 -51.93 -0.38 0.26 16 28 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.08 0.97 7.38 -51.93 -0.38 0.59 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.02 0.35 7.20 -51.92 -0.37 -0.02 16 33 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.11 0.41 8.08 -51.93 -0.42 -0.01 16 36 H 0.10 0.49 7.25 -51.93 -0.38 0.11 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.73 7.43 -51.93 -0.39 0.34 16 39 H 0.40 3.98 8.84 -40.82 -0.36 3.62 16 40 H 0.12 1.38 7.84 -51.93 -0.41 0.97 16 41 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -36.77 336.07 -8.85 -45.62 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.03 Total: -0.53 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -3.20 Total: -2.77 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.12 Total: -54.82 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.10 Total: -8.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.77 -8.85 -45.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121303753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.496 kcal (2) G-P(sol) polarization free energy of solvation -36.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds